CONCORDANCE BETWEEN GENETIC AND SPECIES DIVERSITY IN CORAL REEF FISHES ACROSS THE PACIFIC OCEAN BIODIVERSITY GRADIENT

The relationship between genetic diversity and species diversity provides insights into biogeography and historic patterns of evolution and is critical for developing contemporary strategies for biodiversity conservation. Although concordant large‐scale clines in genetic and species diversity have been described for terrestrial organisms, whether these parameters co‐vary in marine species remains largely unknown. We examined patterns of genetic diversity for 11 coral reef fish species sampled at three locations across the Pacific Ocean species diversity gradient (Australia: ～1600 species; New Caledonia: ～1400 species; French Polynesia: ～800 species). Combined genetic diversity for all 11 species paralleled the decline in species diversity from West to East, with French Polynesia exhibiting lowest total haplotype and nucleotide diversities. Haplotype diversity consistently declined toward French Polynesia in all and nucleotide diversity in the majority of species. The French Polynesian population of most species also exhibited significant genetic differentiation from populations in the West Pacific. A number of factors may have contributed to the general positive correlation between genetic and species diversity, including location and time of species origin, vicariance events, reduced gene flow with increasing isolation, and decreasing habitat area from West to East. However, isolation and habitat area, resulting in reduced population size, are likely to be the most influential.     

THE CYANOBACTERIAL GENUS BRASILONEMA,GEN. NOV., A MOLECULAR AND PHENOTYPIC EVALUATION1

Twelve populations of filamentous, heterocytous scytonematoid cyanobacteria from subaerophytic (mainly epiphytic) habitats in subtropical and tropical Brazil (São Paulo) were studied. The populations form a uniform cluster, which differs from the traditional scytonematoid genera genetically and by several indistinct, but typical morphological characters (fasciculation of filaments, rare false branching). Two strains were isolated in monospecific cultures. Molecular analyses were performed on these strains from natural populations taken from bromeliad leaves and iron water pipes. Because the results from 16S rRNA gene sequencing indicated the separate position of this cyanobacterium at the generic level, a new genus, Brasilonema, is proposed with the type species Brasilonema bromeliae. The new genus is described using combined molecular and cytomorphological criteria, in accordance with the nomenclatorial recommendations of both the Bacteriological Code and the Botanical Code of Nomenclature (cf. Oren 2004 ). The ultrastructure of the type species was studied, and vacuole‐like structures in the cells were explained. The genus Brasilonema is commonly distributed, particularly in subaerophytic habitats from southeastern Brazil. The type species (B. bromeliae) has a rather curious ecology, living epiphytically (in phytothelmes) inside the vase‐shaped leaf rosettes of bromeliads.     

库姆塔格沙漠南缘荒漠植物群落多样性分析

 根据20个样地的调查资料,应用重要值计算多样性指数、均匀度指数、丰富度指数 、优势度指数,对库姆塔格沙漠南缘荒漠植物群落物种多样性进行分析。结果表明: 1）荒漠植物群落分布随其生境地貌不同而不同,山前戈壁上分布有合头草(Sympegma regelii)群落,冲积河道低地分布有荒漠林胡杨(Populus euphratica)、多枝柽柳(Tamarix ramosissima)、胀果甘草（Glycyrrhiza inflata）群落,戈壁沙漠过渡带为梭梭(Haloxylon ammodendron)群落,低海拔的沙山上分布有沙拐枣(Calligonum mongolicum)群落、膜果麻黄(Ephedra rzewalskii)群落和梭梭群落。2）荒漠植物群落物种多样性水平较低,群落结构简单,物种组成单一。群落Shannon_Wiener物种多样性水平表现为合头草群落最高（1.706）,具有草原化荒漠植被类型的成分;梭梭群落、膜果麻黄群落居中（0.875～0.890）,荒漠植被类型特征明显;沙拐枣群落、胡杨群落、多枝 柽柳群落、胀果甘草群落较低（0.079～0.495）,荒漠林、盐地沙生灌丛及盐化草甸植被均有零星分布。3）荒漠植物群落结构层次中,灌木层占居主导地位,群落灌木层物种多样性水平（0.769～1.451）远远大于草本层（0.193～0.254）,且草本层物种多样性受灌木层影响较大。4）荒漠植物群落物种多样性分布格局表现为经向、纬向和海拔梯度的变化,经向、纬向变化为物种多样性水平较高的草原化植物合头草群落（1.706）向物种多样性水平较低的荒漠植物梭梭群落（1.379）和盐化植物多枝柽柳群落（0.376）的过渡,海拔梯度则 呈现低水平的沙拐枣群落（0.819）到高水平的膜果麻黄群落（0.890）向低水平的梭梭群落 （0.645）变化。荒漠植物群落过渡地带一般具有较高的物种多样性和较低的生态优势度。     

TEMPORAL PATTERNS IN POPULATION GENETIC DIVERSITY OF PROROCENTRUM MICANS (DINOPHYCEAE)1

We describe temporal changes in the genetic structure of populations of the dinoflagellate Prorocentrum micans Ehrenberg over a period of 2 years at Scripps Pier (La Jolla, CA, USA). We collected 12 water samples over the course of two blooms and analyzed 166 single‐cell isolates using randomly amplified polymorphic DNA analysis. Six PCR primers uncovered 27 polymorphic markers, allowing the identification of 40 unique haplotypes. Analysis of molecular variance demonstrated that >92% of the genetic variance was partitioned within water samples, providing evidence of high levels of genetic diversity and possibly sexual reproduction. Although the level of genetic diversity remained fairly stable over the sampled time interval, several populations (sampled in June 1998 and March 1999) exhibited significantly different genetic composition, demonstrating differences among bloom and nonbloom periods. About 40% of the isolates in each sample were identified as one haplotype, suggesting that a genetically distinct subgroup was a common member of the populations during the sampled periods. The composition of the remaining isolates was genetically diverse and changed over time, indicating rapid responses (days) to changing environmental conditions or extensive genetic spatial patchiness (kilometers). Within the limitations of our sampling, these two genetically distinct groups appear to exhibit different population dynamics (one stable and the other variable), suggesting that genetic diversity may be closely linked to the change in abundance of phytoplankton on ecological time scales.     

CARBON AVAILABILITY AND THE PATTERN OF CYANOBACTERIAL DOMINANCE IN ENRICHED LOW-CARBON LAKES1

We hypothesize that the pattern of cyanobacterial dominance in experimentally enriched, low-carbon lakes is related not only to the resultant N:P ratio but also to the availability of carbon for gas-vesicle synthesis. We tested this hypothesis by determining the buoyancy responses of a highly gas-vacuolate, N₂-fixing cyanobacterium to P enrichment with and without induced C limitation. Enrichment of samples of Aphanizomenon schindleri (Kling et al. 1994) from blooms in Lake 227 with combinations of C, N, and P produced rapid buoyancy reductions in P treatments, reductions that were reversed within a generation time in treatments that included C or C and N as well as P. These responses are the first of their kind to be observed in experiments with lake populations of cyano-bacteria. The rapid buoyancy reductions were associated with polyphosphate accumulations in P-treated A. schindleri. Differences in buoyancy status after one generation time were linked to differences in relative gas vacuolation between samples treated with P only and samples treated with C and N as well as P. These results may explain the relative success of different types of cyanobacteria in newly enriched, low-carbon lakes. The availability of C for gasvesicle synthesis may determine whether a low N:P ratio induces N₂ fixation by benthic or by planktonic cyanobacteria and whether a high NP ratio leads to dominance by non-gas-vacuolate or by highly gas-vacuolate, non-N₂-fixers.     

西双版纳片断热带雨林蝶类群落结构与多样性研究

对西双版纳片断热带雨林蝴蝶群落结构和多样性进行了研究。样地内共收集蝴蝶9 204号,隶属于10科,62属,84种。主要成分是：粉蝶科(粉蝶属、迁粉蝶属)、凤蝶科 (凤蝶属、麝凤蝶属)、蛱蝶科(斐豹蛱蝶属、尾蛱蝶属),眼蝶科(幕眼蝶属、矍眼蝶屑)等属的种类。属、种以风蝶科最丰富;个体数量以粉蝶科最多;喙蝶科的属、种和个体数量最少。各样地的多样性指数、均匀度和种类丰富度是：热带原始雨林自然保护区>城子片断热带雨林>植物园片断热带雨林>曼峨片断热带雨林。     

CETACEANS OF THE WESTERN TROPICAL INDIAN OCEAN: DISTRIBUTION, RELATIVE ABUNDANCE, AND COMPARISONS WITH CETACEAN COMMUNITIES OF TWO OTHER TROPICAL ECOSYSTEMS

We conducted a cetacean survey in the pelagic western tropical Indian Ocean (WTIO) aboard an 85-m research vessel from March to July 1995, covering 9,784 linear km. Using 25 × binoculars and line-transect methods, we recorded 589 sightings of 21 species. Stenella longirostris was the most abundant cetacean, in terms of number of individuals sighted, by an order of magnitude above any other species, while Physeter macrocephalus was the most frequently sighted, in terms of number of schools. Twelve species were widespread, seven were rare, and two were localized; our sightings include new distributional records for 12 species. Significant observations included the following: (1) Delphinus cf. tropicalis was abundant off the coast of Oman (16 sightings) and readily distinguishable in the field from D. delphis and D. capensis, (2) Balaenoptera musculus was fairly common and localized in the area of the Maldives (17 sightings), and (3) three sightings were made of an unidentified bottlenose whale tentatively referred to as Indopacetus (i. e., Mesoplodon) pacificus. We recorded 26 mixed-species cetacean schools, 43 schools with which seabirds associated, and 17 schools associated with tuna. Notable among these were mixed aggregations of Stenella attenuata, S. longirostris, yellowfin tuna, and seabirds. The cetacean community of the WTIO was similar to that of the eastern tropical Pacific (ETP) and the Gulf of Mexico (GM) in several respects. First, differences in abundance rank of individual species were small, with the result that common species were common and rare species were rare, regardless of ocean. Second, these differences in abundance were due primarily to differences in encounter rate, which varied with ocean by as much as 3,000%, and less so to school size, which generally varied less than 100%. Third, regardless of ocean, three species comprised the majority of cetaceans in the community, Stenella attenuata, S. longirostris, and S. coeruleoalba, representing 62%-82% of all individuals for all species. However, the rank order of abundance for these three species differed with ocean. Most notably, S. attenuata was abundant in the ETP and GM (abundance rank = 2 and 1, respectively) but much less common in the WTIO (abundance rank = 6). Although habitat preferences for S. attenuata appear to overlap considerably with those of S. longirostris in the ETP, our results suggest there may actually be significant differences between these two species. Detailed analysis of oceanographic correlates of distribution will be necessary in order to understand fully the habitat requirements of these pelagic dolphins, often the most conspicuous elements of tropical cetacean communities around the world.     

ULTRASTRUCTURE OF UNICELLULAR N2 FIXING CYANOBACTERIA FROM THE TROPICAL NORTH ATLANTIC AND SUBTROPICAL NORTH PACIFIC OCEANS1

Nitrogen fixing unicellular marine cyanobacteria may have a major role in the global biogeochemistry of N; nevertheless, little is known about their phylogeny and morphology. We isolated N₂ fixing unicellular cyanobacteria from the tropical North Atlantic and subtropical North Pacific Oceans and examined ultrastructural dynamics during dark:light cycles when grown in incubators. The isolate from the subtropical North Pacific was larger and showed a size variation from 3 to 7 μm but had similar morphology and cell division‐plane characteristics as the isolate from the North Atlantic (2.5 μm). Nitrogen fixation only occurred during the dark phase, and ultrastructural analysis demonstrated changes in the appearance and quantity of large carbohydrate‐like granules present in the cells. To verify the composition of these carbohydrate‐like granules, staining with periodic acid, thioacetic acid, and silver was carried out, and a positive reaction was obvious in all cells. The cells from the Atlantic seemed to empty their polysaccharide granules during the night, whereas those from the Pacific showed a decrease in the number of their granules. Our work suggests that phylogenetically related strains of unicellular N₂ fixing cyanobacteria from different oceans showed similar carbohydrate‐like granules that could be used to fuel N₂ fixation during darkness.     

INVOLVEMENT OF MICROCYSTINS AND COLONY SIZE IN THE BENTHIC RECRUITMENT OF THE CYANOBACTERIUM MICROCYSTIS (CYANOPHYCEAE)1

The benthic recruitment of Microcystis was simulated in vitro in order to characterize the colonies of Microcystis recruited and to study the impact of intracellular and extracellular microcystins (MCs), and the influence of colony size on the recruitment process. We observed recruitment dynamics consisting of a lag phase followed by a peak and then a return to low recruitment rates, mainly controlled by passive resuspension throughout the experiment, and by physiological processes during the recruitment peak. Ninety‐seven percent of the Microcystis colonies recruited were <160 μm in maximum length, and their cells contained much greater amounts of MCs (0.26 ± 0.14 pg eq microcystin leucine‐arginine variant [MC‐LR] · cell^?1) than those in benthic colonies (0.021 ± 0.004 pg eq MC‐LR · cell^?1). The MC content of recruited Microcystis varied significantly over time and was not related to changes in the proportion of potentially toxic genotypes, determined using real‐time PCR. On the other hand, the changes in MC content in the potentially toxic Microcystis recruited were closely and negatively correlated with recruitment dynamics; the lowest MC contents corresponded to high recruitment rates, and the highest MC contents corresponded to low recruitment rates. Thus, depending on temperature and light conditions, these variations are thought to result from the selection of various subpopulations from among the smallest and the most toxic of the initial benthic population. Adding purified MC‐LR to experimental treatments led to a decreased recruitment of Microcystis and more specifically of mcyB genotypes.     

THE USE OF TOXICITY TESTING IN EFFLUENT REGULATION AND CONTROL: A NEW DIMENSION TO ASSESSMENT AND MANAGEMENT OF WATER QUALITY IN SOUTH AFRICA

Summary

Efficient management tools are continually required to cope with increasing demands placed on the quality and quantity of aquatic resources. Recent developments in environmental monitoring indicate the importance of incorporating biological indicators in assessment programmes. Aquatic toxicology has consequently become an important monitoring and regulatory science. Applications of aquatic toxicity testing include: deriving water quality criteria; toxicological evaluations of whole effluents and receiving waters; and the estimation of ecological risk. Toxicity testing can potentially play a significant role in improving water quality in years to come, especially through its application in effluent regulation. Currently however, few environmental laboratories in South Africa have the required expertise and facilities to carry out a representative range of toxicity tests. Training and funding are required to build the capacity for the necessary developmental research, before toxicity testing can routinely be implemented.

The significant problems we face cannot be solved at the same level of thinking we were at when we created them. Albert Einstein.     

吕梁山南端白皮松的群落特征及其多样性的研究

选择白皮松群落分布较集中的黑虎沟和柳家山两个地段设计26个样地,用样方法进行调查,共作样方426个。分析了白皮松群落的种类组成,区系特点,群落外貌,垂直结构和水平结构等群落学特征,并对该群落的环境概况进行分析,计测了不同地段上群落的频盖度指标和不同层次上的ShannonWiener指数、Simpson指数、Pielou指数和种间相遇指数。结果表明:白皮松主要分布于海拔900~1400米之间,在吕梁山南端白皮松群落组成种类约70种,北温带分布属占优势。矮高位芽植物种类多,数量大,是白皮松群落的优势层片。柳家山乔木层为白皮松单优组成,H值为0.706;灌木层H值最高为2.351;草本层H值为1.257。黑虎沟乔木层为多优树种组成,H值为1.825;灌木层H值为2.308;草本层H值为2.400。本研究为白皮松可持续利用和保护提供了有益的参考。     

EFFECTS OF SALINITY AND LIGHT INTENSITY ON THE RESUMPTION OF PHOTOSYNTHESIS IN REHYDRATED CYANOBACTERIAL MATS FROM BAJA CALIFORNIA SUR,MEXICO1

Lyngbya mats in the intertidal of the Laguna Ojo de Liebre are metabolically active for only a few days every 2 weeks during spring tides, with environmental conditions varying greatly during these periods of hydration. Pulse amplitude modulated fluorometry (PAM) and oxygen measurements were used to measure photosynthetic activity during the first few hours after rehydration under various light intensities and salinities. Upon rehydration, a transitory maximum in respiratory activity (10–30 min) occurred before the resumption of photosynthesis, which could recover in about 2 h. Salinities outside the mats' natural range (35–50 psu) were detrimental to photosynthetic recovery. Both high (100 psu) and low (0–10 psu) salinities slowed recovery as well as lowered the overall photosynthetic yield. Photosynthesis was initiated earlier and recovered more rapidly with increasing light intensity. In addition, the positive effect of light on rates of recovery was disproportionately greater at lower salinities (10–25 psu) where high light (500 W·m^?2) counteracted the negative effects of low‐salt stress early in recovery. However, higher light intensities became photoinhibitory later in recovery (>2 h). Photosynthesis did not recover uniformly within the mat. Filaments deeper in the mat most likely recovered later than those near the surface due to high light attenuation. The ability of the mats to tolerate desiccation and take advantage of hydration periods even when conditions are suboptimal enables these mats to predominate in the intertidal environment.     

MOLECULAR AND MORPHOLOGICAL CHARACTERIZATION OF TEN POLAR AND NEAR‐POLAR STRAINS WITHIN THE OSCILLATORIALES (CYANOBACTERIA)1

An approximately 1400‐bp region of the 16S rRNA gene was sequenced for 10 polar or near‐polar strains putatively placed in the Oscillatorialean genera Oscillatoria, Phormidium, and Lyngbya obtained from the University of Toronto Culture Collection to assess phylogenetic relationships. The strains were also examined for thylakoid structure and cell division type with TEM as well as traditional morphology with LM. Phylogenetic trees constructed using parsimony, distance, and maximum likelihood methods were similar in topology. If the original epithets applied to the sequenced strains (both polar and those from GenBank) were used, it was clear that taxa were not monophyletic. However, using the revised taxonomic system of Anagnostidis and Komárek, we were able to reassign these strains to their current correct taxa (species, genus, and family). When these assignments were made, it was determined that the molecular sequence data analyses were congruent with morphology and ultrastructure. Nine of the polar strains were found to be new species, and eight were described as such: Arthronema gygaxiana Casamatta et Johansen sp. nov., Pseudanabaena tremula Johansen et Casamatta sp. nov., Leptolyngbya angustata Casamatta et Johansen sp. nov., Phormidium lumbricale Johansen et Casamatta sp. nov., Microcoleus glaciei Johansen et Casamatta sp. nov., Microcoleus rushforthii Johansen et Casamatta sp. nov., Microcoleus antarcticus Casamatta et Johansen sp. nov., Microcoleus acremannii Casamatta et Johansen sp. nov. Some genera (Leptolyngbya and Microcoleus) were clearly not monophyletic and require future revision.     

鄂尔多斯高原不同生境条件下中间锦鸡儿植物叶片表皮特征及遗传多样性变化分析

该研究在鄂尔多斯高原从东到西按照降雨量逐渐减少的梯度选取了5个地区,对中间锦鸡儿(Caragana davazamcii)叶片的表皮结构进行了比较观察,发现不同生境条件下的中间锦鸡儿由于环境的长期作用表皮表现出一定的差异性,主要表现在随着多年平均降雨量的减少叶片表皮毛密度、气孔密度、气孔指数均有所增加,气孔深陷程度逐渐加深,角质层由光滑变得粗糙,但并不是线性增加,因此本研究对不同生境的中间锦鸡儿植物叶片做了遗传多样性分析,发现随着生境由东向西的变化,中间锦鸡儿种群遗传多样性有增加的趋势,与表皮形态特征变化一致,说明中间锦鸡儿呈现明显的表现型可塑性,可塑性反应比较高。     

西双版纳片断热带雨林的结构、物种组成及其变化的研究

通过对西双版纳地区的６个“龙山”片断热带雨林与同样类型的原始热带雨林的比较研究,探讨了片断热带雨林的群落结构、种类组成、生活型构成、种群结构、植物丰富度及多样性等的变化及其规律。随着热带雨林的片断化,森林边缘效应和人为干扰加剧,热带雨林群落的结构变得不完整,植物丰富度降低。在生活型构成上,附生植物,大、中高位芽植物以及地上芽植物比例减少,藤本植物和小高位芽植物比例明显增高。在种群结构上,受轻、中度干扰的片断雨林,仅含１～２个个体的种类在群落中的相对数量有所增加,乔木种类组成变得不稳定,随着人为干扰的加剧,那些仅有１～２个个体为代表的种类将首先消失。在单位面积种数和物种多样性指数上,情况比较复杂,热带雨林片断化和受到一定干扰可能会增加藤本植物多样性指数,但干扰过度又会减低其多样性指数,附生植物多样性指数则随干扰和隔离时间呈明显下降趋势,但总的说来,片断热带雨林单位面积上的种数远比原始林少得多,随着人为干扰和隔离的加剧,物种多样性指数显著降低。     

GENETIC DIVERSITY IN THE MATRILINEAL WHALES: MODELS OF CULTURAL HITCHHIKING AND GROUP-SPECIFIC NON-HERITABLE DEMOGRAPHIC VARIATION

Cultural hitchhiking is the process by which cultural selection reduces the diversity of genes that are being transmitted in parallel to selective cultural traits. I use simulation models to investigate cultural hitchhiking in geographically unstructured populations of culturally homogeneous tribes. Substantial reduction of genetic diversity required: a reasonably low mutation rate; that tribes split fairly frequently when they constitute a substantial part of the population; a fairly low migration rate (<∼10 migrants per tribe per generation); only a low rate of cultural evolution (mean culturally determined fitness change >∼0.005%/ generation); and that cultural assimilation from other tribes change the fitness of a tribe less than cultural innovation within it. Cultural hitchhiking tends to increase mean tribe size. Measures of genetic and cultural variation among tribes poorly indicate past cultural hitchhiking. Demographic effects, in which tribal fitness varies but is not heritable, can also reduce a population's genetic diversity if the fitness varies very considerably, or tribal extirpation is added. In such cases populations frequently become extinct. Four species of matrilineal whales have remarkably low mitochondrial DNA diversity. Knowledge of the population and social structure of these species is consistent with the conditions for cultural hitchhiking. However, there remain important information gaps.     

赤水河两种荷马条鳅属鱼类的遗传多样性及谱系生物地理学过程分析

研究以线粒体Cyt b基因为分子标记,对赤水河两种荷马条鳅属（Homatula）鱼类（红尾荷马条鳅和短体荷马条鳅）的遗传多样性及种群结构进行了分析;同时,结合了对在长江上游其他几个水系分布的同种鱼类进行比较,分析其生物地理学过程。遗传多样性分析结果表明,5个水系135尾红尾荷马条鳅Cyt b基因序列共检测出42个单倍型,单倍型多样性和核苷酸多样性分别为0.936和0.00493;其中,赤水河种群的分别为0.891和0.00208。3个水系52尾短体荷马条鳅Cyt b基因序列共检测出12个单倍型,单倍型多样性和核苷酸多样性分别0.821和0.01105;赤水河种群的分别为0.646和0.00390。基于ML和BI法构建的单倍型分子系统发育树结果表明,两物种各自构成单系,且得到较强支持。红尾荷马条鳅各种群地理格局分布明显,赤水河种群为并系类群位于分支基部。在短体荷马条鳅支系中,岷江与沱江两个水系的个体相互聚类在一起,而赤水河群体聚成一个分支。赤水河与其他水系不存在共享单倍型,表现了明显的隔离和差异性的地理分布格局。由于这些水系之间地理位置相距较远,推测这种格局的形成不是地质运动造成的水系隔离,而是历史时期水位的高低变化造成鱼类种群的扩散和隔离。错配分析支持赤水河两物种种群扩张的推断,但中性检验却并非全部支持,显示种群历史相对复杂。