Radio‐tracking three Sugar Gliders using forested highway median strips at Bongil Bongil National Park,north‐east New South Wales

Major roads and highways disrupt ecological flows and create barriers or filters to the movement of many species of wildlife, including gliding mammals. Mitigating these impacts presents major challenges for road authorities. One approach has been the retention of forest vegetation in median strips to serve as ‘stepping stones’ for gliding mammals to cross road gaps otherwise beyond their glide capacity. A recently upgraded section of the Pacific Highway through tall open forest near Bonville in north‐east New South Wales retained forest within two 10‐ to 45‐m‐wide median strips separating each carriageway and a service road. We investigated whether Sugar Gliders (Petaurus breviceps) used these median strips to cross an 85 to 135 m‐wide road corridor. Three radio‐collared Sugar Gliders (one male and two females) moved between both highway medians and forest on either side of the road corridor during 32 days of radio‐tracking. Although the sample size is small, these results suggest that highway median strips, featuring mature vegetation with a major den tree, can provide ‘stepping stones’ for gliding mammals to cross a highway that would otherwise function as a movement barrier or filter. Longer‐term research with greater numbers of animals at this and other sites is required to determine whether such strips would be commonly used when den trees are absent and whether gliding via median strips may also increase road mortality of the species.     

Gap‐crossing decisions of forest birds in a fragmented landscape

Habitat loss and fragmentation are recognized as primary drivers of biodiversity loss worldwide. To understand the functional effects of habitat fragmentation on bird populations, data on movement across gaps in habitat cover are necessary, although rarely available. In this study, we used call playback to simulate a conspecific territorial intruder to entice birds to move through the landscape in a predictable and directional manner. We then quantified the probability of movement in continuous forest and across cleared gaps for two forest‐dependent species, the grey shrike‐thrush (Colluricincla harmonica) and the white‐throated treecreeper (Cormobates leucophaeus). Fifty‐four playback trials were conducted for each species across distances ranging from 25 to 480 m in continuous forest and 15–260 m across gaps in a forest‐agricultural landscape in southern Victoria, Australia. The probability of movement was significantly reduced by gaps in forest cover for both species. Shrike‐thrushes were six times more likely to move 170 m in continuous forest than to cross 170‐m gaps. The mean probability that treecreepers would cross any gap at all was less than 0.5, and they were three times less likely to move 50 m across a gap than through continuous forest. Both species displayed non‐linear responses to increasing gap distance: we identified a gap‐tolerance threshold of 85 m for the shrike‐thrush and 65 m for the treecreeper beyond which individuals were most unlikely to cross. The presence of scattered paddock trees increased functional connectivity for the shrike‐thrush, with individuals crossing up to 260 m when scattered trees were present. We conclude that gaps in habitat cover are barriers to movement, and that characteristics of the intervening matrix influence landscape permeability.     

Permeability of the urban matrix to arboreal gliding mammals: Sugar gliders in Melbourne,Australia

Habitat corridors that facilitate functional connectivity are a fundamental component of wildlife conservation in fragmented landscapes. However, the landscape matrix separating suitable habitat is not uniformly impermeable to movement and management to increase matrix permeability could be an alternative means to maintain connectivity. Gliding mammals are particularly sensitive to fragmentation because their movements are constrained by glide distance thresholds. Populations of gliders in cities are at risk of being isolated by increasing habitat loss and urban development, yet little is known about how the urban matrix affects glider movement. Here we investigate how the level of urbanization and tree cover in the matrix influence matrix permeability to sugar gliders (Petaurus breviceps) within suburban forest reserves. Twenty‐two sugar gliders were radio‐tracked over winter and summer at four reserves. Boundary crossing behaviour was measured as the number of times each glider crossed into the matrix, and matrix permeability was determined as the maximum distance travelled by gliders into the matrix. The majority of gliders (81%) were located in the matrix at least once, and rates of boundary crossing were consistent across urbanization and tree cover levels. Matrix permeability was negatively affected by matrix urbanization, but not by matrix tree cover, and no interaction effects were found. Although distances travelled by gliders into the matrix did not exceed 180 m, they were comparable with typical movement distances by gliders in reserves. Our results demonstrate that the urban matrix can provide suitable habitat for gliding mammals to move and forage, but that increased urbanization may inhibit glider use of the matrix irrespective of tree cover. This finding has implications for conservation planning and suggests that structurally connected areas may not be used if movement behaviour is inhibited. Conversely, management of matrix permeability could be used to maintain connectivity without needing to construct physical corridors.     

Using gap‐crossing capacity to evaluate functional connectivity of two Atlantic rainforest birds and their response to fragmentation

Abstract One of the main consequences of habitat loss and fragmentation is the increase in patch isolation and the consequent decrease in landscape connectivity. In this context, species persistence depends on their responses to this new landscape configuration, particularly on their capacity to move through the interhabitat matrix. Here, we aimed first to determine gap‐crossing probabilities related to different gap widths for two forest birds (Thamnophilus caerulescens, Thamnophilidae; and Basileuterus culicivorus, Parulidae) from the Brazilian Atlantic rainforest. These values were defined with a playback technique and then used in analyses based on graph theory to determine functional connections among forest patches. Both species were capable of crossing forest gaps between patches, and these movements were related to gap width. The probability of crossing 40 m gaps was 50% for both species. This probability falls to 10% when the gaps are 60 m (for B. culicivorus) or 80 m (for T. caerulescens). Actually, birds responded to stimulation about two times more distant inside forest trials (control) than in gap‐crossing trials. Models that included gap‐crossing capacity improved the explanatory power of species abundance variation in comparison to strictly structural models based merely on patch area and distance measurements. These results highlighted that even very simple functional connectivity measurements related to gap‐crossing capacity can improve the understanding of the effect of habitat fragmentation on bird occurrence and abundance.     

Comparing motion capture cameras versus human observer monitoring of mammal movement through fence gaps: a case study from Kenya

Monitoring the movement and distribution of wildlife is a critical tool of an adaptive management framework for wildlife conservation. We installed motion‐triggered cameras to capture the movement of mammals through two purpose‐built migration gaps in an otherwise fenced conservancy in northern Kenya. We compared the results to data gathered over the same time period (1 Jan 2011–31 Dec 2012) by the human observers monitoring mammal tracks left at the same fence gaps in a sandy loam detection strip. The camera traps detected more crossing events, more species and more individuals of each species per crossing event than did the human track observers. We tested for volume detection differences between methods for the five most common species crossing each gap and found that all detection rates were heavily weighted towards the camera‐trap method. We review some of the discrepancies between the methods and conclude that although the camera traps record more data, the management of that data can be time‐consuming and ill‐suited to some time‐sensitive decision‐making. We also discuss the importance of daily track monitoring for adaptive management conservation and community security.     

Population genetics reveals high connectivity of giant panda populations across human disturbance features in key nature reserve

The giant panda is an example of a species that has faced extensive historical habitat fragmentation, and anthropogenic disturbance and is assumed to be isolated in numerous subpopulations with limited gene flow between them. To investigate the population size, health, and connectivity of pandas in a key habitat area, we noninvasively collected a total of 539 fresh wild giant panda fecal samples for DNA extraction within Wolong Nature Reserve, Sichuan, China. Seven validated tetra‐microsatellite markers were used to analyze each sample, and a total of 142 unique genotypes were identified. Nonspatial and spatial capture–recapture models estimated the population size of the reserve at 164 and 137 individuals (95% confidence intervals 153–175 and 115–163), respectively. Relatively high levels of genetic variation and low levels of inbreeding were estimated, indicating adequate genetic diversity. Surprisingly, no significant genetic boundaries were found within the population despite the national road G350 that bisects the reserve, which is also bordered with patches of development and agricultural land. We attribute this to high rates of migration, with four giant panda road‐crossing events confirmed within a year based on repeated captures of individuals. This likely means that giant panda populations within mountain ranges are better connected than previously thought. Increased development and tourism traffic in the area and throughout the current panda distribution pose a threat of increasing population isolation, however. Maintaining and restoring adequate habitat corridors for dispersal is thus a vital step for preserving the levels of gene flow seen in our analysis and the continued conservation of the giant panda meta‐population in both Wolong and throughout their current range.     

Comparison of road surveys and circuit theory to predict hotspot locations for implementing road-effect mitigation

The mitigation of road-effects on wildlife, especially road mortality and habitat fragmentation, has become increasingly common in the last 20 years. However, exclusion fencing and habitat connectivity structures can be very costly and several questions remain regarding how to best determine locations that will optimize mitigation success. Based on data collected across several years and across multiple landscapes and taxa, we present a comparative analysis of two methods: road surveys and circuit theory, and review their benefits and challenges to better inform decision making. Road surveys were completed in two locations over three years for large mammals and herpetofauna to identify road crossing hotspots. Circuit theory was also applied to these systems to identify crossing hotspots using habitat resistance models. The location, number and width of hotspots were compared between methods. Hotspot distributions were similar between methods for some herpetofauna, but different for Mammals, and road surveys produced a significantly greater number of smaller hotspots compared to circuit theory, implying that road surveys provide better hotspot resolution. As circuit model complexity increased, the number and width of hotspots decreased, diffusing across the landscape. Road surveys were better at predicting optimal crossing structure location at a local scale; however, circuit theory is less costly, and can be useful at large scales. As both methods can offer valuable information, we argue that the combination of these two approaches provides a strong basis for managers and biologists to make informed decisions about costly mitigation measures, optimizing both conservation benefits and limited funding.     

Riparian disturbance restricts in‐stream movement of salamanders

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Rapid assessment of linear transport infrastructure in relation to the impact on landscape continuity for large ranging mammals

Many Eastern European countries still host landscapes with high value due to their habitat quality and size. Some of these countries are new member states of the European Union, and EU-accession is accompanied by huge investments in the development of traffic infrastructure. Environmental assessments mandatory for road constructions in the EU do not necessarily require explicit measures for the mitigation of fragmentation, and technical constructions associated with road building are frequently assumed to provide sufficient possibilities for wildlife crossings. We evaluated those technical structures at two motorway sections separating relevant subpopulations of the brown bear (Ursus arctos) in Bulgaria. Our assessment revealed that the permeability of the two motorways has been considerably overestimated. A total of just 13 out of the 77 potential crossing possibilities of the two roads together meet the requirements we defined for suitable wildlife crossings. We found that the potential for improvement of the crossing functionality of already existing technical facilities along the motorways is very limited. Given the dependence on a small number of habitat paths connecting suitable crossings with habitat on both sides of the road, connectivity between subpopulations is vulnerable to fragmentation impacts.     

Quaternary land bridges have not been universal conduits of gene flow

Quaternary climate oscillations are a well‐known driver of animal diversification, but their effects are most well studied in areas where glaciations lead to habitat fragmentation. In large areas of the planet, however, glaciations have had the opposite effect, but here their impacts are much less well understood. This is especially true in Southeast Asia, where cyclical changes in land distribution have generated enormous land expansions during glacial periods. In this study, we selected a panel of five songbird species complexes covering a range of ecological specificities to investigate the effects Quaternary land bridges have had on the connectivity of Southeast Asian forest biota. Specifically, we combined morphological and bioacoustic analysis with an arsenal of population genomic and modelling approaches applied to thousands of genome‐wide DNA markers across a total of more than 100 individuals. Our analyses show that species dependent on forest understorey exhibit deep differentiation between Borneo and western Sundaland, with no evidence of gene flow during the land bridges accompanying the last 1–2 ice ages. In contrast, dispersive canopy species and habitat generalists have experienced more recent gene flow. Our results argue that there remains much cryptic species‐level diversity to be discovered in Southeast Asia even in well‐known animal groups such as birds, especially in nondispersive forest understorey inhabitants. We also demonstrate that Quaternary land bridges have not been equally suitable conduits of gene flow for all species complexes and that life history is a major factor in predicting relative population divergence time across Quaternary climate fluctuations.     

A comparison of camera trap and permanent recording video camera efficiency in wildlife underpasses

In the current context of biodiversity loss through habitat fragmentation, the effectiveness of wildlife crossings, installed at great expense as compensatory measures, is of vital importance for ecological and socio‐economic actors. The evaluation of these structures is directly impacted by the efficiency of monitoring tools (camera traps…), which are used to assess the effectiveness of these crossings by observing the animals that use them. The aim of this study was to quantify the efficiency of camera traps in a wildlife crossing evaluation. Six permanent recording video systems sharing the same field of view as six Reconyx HC600 camera traps installed in three wildlife underpasses were used to assess the exact proportion of missed events (event being the presence of an animal within the field of view), and the error rate concerning underpass crossing behavior (defined as either Entry or Refusal). A sequence of photographs was triggered by either animals (true trigger) or artefacts (false trigger). We quantified the number of false triggers that had actually been caused by animals that were not visible on the images (“false” false triggers). Camera traps failed to record 43.6% of small mammal events (voles, mice, shrews, etc.) and 17% of medium‐sized mammal events. The type of crossing behavior (Entry or Refusal) was incorrectly assessed in 40.1% of events, with a higher error rate for entries than for refusals. Among the 3.8% of false triggers, 85% of them were “false” false triggers. This study indicates a global underestimation of the effectiveness of wildlife crossings for small mammals. Means to improve the efficiency are discussed.     

Impact of weather conditions,seasonality and moonlight on the use of artificial canopy bridges by nocturnal arboreal mammals

Natural and artificial canopy bridges can be used to mitigate the effects of habitat fragmentation. Understanding the ecological factors that influence bridge use is imperative to the effective design and placement of this potential conservation intervention. Moonlight, seasonality and weather may influence the cost and risk of using bridges, potentially reducing their effectiveness. We installed five artificial waterline bridges and, between 2017 and 2019, monitored via camera trapping their use by Javan palm civets Paradoxurus musanga javanicus and Javan slow lorises Nycticebus javanicus. We used a weather station to record microclimate data (temperature and relative humidity) and calculated the illumination percentage of the moon. We tested the influence of moon luminosity, relative humidity, seasonality (Julian day) and temperature on the frequency of bridge use via Generalised Additive Models. Camera traps captured 938 instances of bridge use by civets, which was significantly lower than the reference value at moon luminosity?>?90%, temperatures?>?20 °C, humidity?>?90%, and during the drier period (May–July). Camera traps captured 1036 instances of bridge use by lorises, which was significantly lower than the reference value during the drier period and higher than the reference value at temperatures?>?20 °C. Lorises showed peaks in bridge use close to sunset and sunrise whereas civets showed peaks around 2 h after sunset and 2 h before sunrise. Our study illustrates the utility of simple-to-construct bridges by two sympatric nocturnal mammals facing severe habitat loss, with bridge use differing between those species according to abiotic factors. In particular, less use by both taxa during the drier season could suggest modifying placement of bridges or providing another intervention during that time. Camera traps were an excellent mechanism to record these differences and to validate the importance of the bridges, including during inclement weather and dark nights, when observations would be more difficult for human observers. By understanding the influence that abiotic factors have on the use of artificial bridges, we can improve bridge placement and construction to encourage use by a variety of species, particularly those threatened by habitat fragmentation.

     

Soaring across continents: decision‐making of a soaring migrant under changing atmospheric conditions along an entire flyway

Thermal soaring birds reduce flight‐energy costs by alternatingly gaining altitude in thermals and gliding across the earth's surface. To find out how soaring migrants adjust their flight behaviour to dynamic atmospheric conditions across entire migration routes, we combined optimal soaring migration theory with high‐resolution GPS tracking data of migrating honey buzzards Pernis apivorus and wind data from a global numerical atmospheric model. We compared measurements of gliding air speeds to predictions based on two distinct behavioural benchmarks for thermal soaring flight. The first being a time‐optimal strategy whereby birds alter their gliding air speeds as a function of climb rates to maximize cross‐country air speed over a full climb– glide cycle (V_opt). The second a risk‐averse energy‐efficient strategy at which birds alter their gliding air speed in response to tailwinds/headwinds to maximize the distance travelled in the intended direction during each glide phase (V_bgw). Honey buzzards were gliding on average 2.05 ms^{– 1} slower than V_opt and 3.42 ms^{– 1} faster than V_bgw while they increased air speeds with climb rates and reduced air speeds in tailwinds. They adopted flexible flight strategies gliding mostly near V_bgw under poor soaring conditions and closer to V_opt in good soaring conditions. Honey buzzards most adopted a time‐optimal strategy when crossing the Sahara, and at the onset of spring migration, where and when they met with the best soaring conditions. The buzzards nevertheless glided slower than V_opt during most of their journeys, probably taking time to navigate, orientate and locate suitable thermals, especially in areas with poor thermal convection. Linking novel tracking techniques with optimal migration models clarifies the way birds balance different tradeoffs during migration.     

Influences on mammals frequency of use of small bridges and culverts along the Qinghai–Tibet railway,China

Understanding the use of small bridges and culverts by wildlife to cross the Qinghai–Tibet railway will aid in the design of wildlife crossing structures for similar transportation infrastructure. From 2014 to 2016, 36 infrared cameras were placed inside 14 small bridges and 11 culverts along the Qinghai–Tibet railway to determine the structures’ effectiveness as wildlife passages. Thirteen species of mammals were found to use the small bridges and culverts to cross the railway. The crossing rates for all mammals were significantly higher for small bridges than for culverts. Tibetan antelope (Pantholops hodgsonii), Tibetan gazelle (Procapra picticaudata), kiang (Equus kiang), and wild yak (Bos mutus) preferred small bridges over culverts to cross the railway. In contrast, mountain weasel (Mustela altaica) and Asian badger (Meles leucurus) preferred culverts to cross the railway. The crossing rates of all mammals, particularly Tibetan gazelle and woolly hare, were positively influenced by structure width. Structure height had a positive influence on wild yak, but structure length had a negative influence on kiang. The distance to the highway had a positive influence on the crossing rates of all mammals, particularly wild yak and woolly hare. Human use of the structures had no influence on the crossings of most mammals except for common wolf. We suggest that road design schemes include large and open crossing structures to benefit most species with limitations on human activities near wildlife passages.     

Mitigating the impacts of rainforest roads in Queensland’s Wet Tropics: Effective or are further evaluations and new mitigation strategies required?

Summary Research into mitigation of the ecological impacts of rainforest roads in North Queensland has a long history, commencing during the formative years of Australian road ecology. In Queensland’s Wet Tropics and throughout Australia, installation of engineered structures to ameliorate ecological road impacts is now common during larger construction projects, but unusual in smaller road projects. Retro‐fitting of engineering solutions to roads that are causing obvious impacts is also uncommon. Currently, Australian mitigation measures concentrate on two important impacts: road mortality and terrestrial habitat fragmentation. Unfortunately, other important ecological impacts of roads are seldom addressed. These include edge effects, traffic disturbance, exotic invasions and fragmentation of stream habitats. In North Queensland, faunal underpasses and canopy bridges across rainforest roads have been monitored over long periods. These structures are used frequently by multiple individuals of various species, implying effectiveness for movements and dispersal of many generalist and specialised rainforest animals. However, without addressing population and genetic implications, assessment of effectiveness of these connectivity structures is not holistic. These aspects need sufficient long‐term funding to allow similar systematic monitoring before and after construction. Throughout Australia, more holistic approaches to mitigation of road impacts would routinely examine population and genetic connectivity, consider mitigation against more ecological impacts where appropriate and include landscape‐scale replication.     

Take-off and landing kinetics of a free-ranging gliding mammal, the Malayan colugo (Galeopterus variegatus)

Arboreal animals negotiate a highly three-dimensional world that is discontinuous on many spatial scales. As the scale of substrate discontinuity increases, many arboreal animals rely on leaping or gliding locomotion between distant supports. In order to successfully move through their habitat, gliding animals must actively modulate both propulsive and aerodynamic forces. Here we examined the take-off and landing kinetics of a free-ranging gliding mammal, the Malayan colugo (Galeopterus variegatus) using a custom-designed three-dimensional accelerometry system. We found that colugos increase the propulsive impulse to affect longer glides. However, we also found that landing forces are negatively associated with glide distance. Landing forces decrease rapidly as glide distance increases from the shortest glides, then level off, suggesting that the ability to reorient the aerodynamic forces prior to landing is an important mechanism to reduce velocity and thus landing forces. This ability to substantially alter the aerodynamic forces acting on the patagial wing in order to reorient the body is a key to the transition between leaping and gliding and allows gliding mammals to travel long distances between trees with reduced risk of injury. Longer glides may increase the access to distributed resources and reduce the exposure to predators in the canopy or on the forest floor.     

Genetic costructure in a meta‐community under threat of habitat fragmentation

Habitat fragmentation increasingly threatens the services provided by natural communities and ecosystem worldwide. An understanding of the eco‐evolutionary processes underlying fragmentation‐compromised communities in natural settings is lacking, yet critical to realistic and sustainable conservation. Through integrating the multivariate genetic, biotic and abiotic facets of a natural community module experiencing various degrees of habitat fragmentation, we provide unique insights into the processes underlying community functioning in real, natural conditions. The focal community module comprises a parasitic butterfly of conservation concern and its two obligatory host species, a plant and an ant. We show that both historical dispersal and ongoing habitat fragmentation shape population genetic diversity of the butterfly Phengaris alcon and its most limited host species (the plant Gentiana pneumonanthe). Genetic structure of each species was strongly driven by geographical structure, altitude and landscape connectivity. Strikingly, however, was the strong degree of genetic costructure among the three species that could not be explained by the spatial variables under study. This finding suggests that factors other than spatial configuration, including co‐evolutionary dynamics and shared dispersal pathways, cause parallel genetic structure among interacting species. While the exact contribution of co‐evolution and shared dispersal routes on the genetic variation within and among communities deserves further attention, our findings demonstrate a considerable degree of genetic parallelism in natural meta‐communities. The significant effect of landscape connectivity on the genetic diversity and structure of the butterfly also suggests that habitat fragmentation may threaten the functioning of the community module on the long run.     

A technique for quantitative estimation of small mammals traversing water obstacles

A new method for quantitative study of small mammals swimming across water obstacles was developed. A line of 25 traps was installed on either poles or boards (“rafts”) with anchors at a distance of 20–25 m from the bank and with 10-m distances between the items. The study was performed upstream along the Ilych River in August 2013. A total of 300 trap/day were accumulated. Twenty-four small mammal individuals of 8 species were captured. Their relative abundance was estimated as the number of individuals per 100 trap/day. It was found experimentally that floating poles neither repel nor attract animals. When an individual accidentally finds a floating pole, it climbs up and explores it for some time. The number of animals per total length of rafts per time unit can be suggested as an index of intensiveness of migration across a water obstacle. In the area studied, the number of small mammals of various species crossing the river was estimated at 26.7 individuals per 1 km/day. A length of 5 m for floating poles/boards and installation of two traps at the ends of an item is suggested to be used.     

A species‐centered approach for uncovering generalities in organism responses to habitat loss and fragmentation

Theoretical models predict strong influences of habitat loss and fragmentation on species distributions and demography, but empirical studies have shown relatively inconsistent support across species and systems. We argue that species’ responses to landscape‐scale habitat loss and fragmentation are likely to appear less idiosyncratic if it is recognized that species perceive the same landscapes in different ways. We present a new quantitative approach that uses species distribution models (SDMs) to measure landscapes (e.g. patch size, isolation, matrix amount) from the perspective of individual species. First, we briefly summarize the few efforts to date demonstrating that once differences in habitat distributions are controlled, consistencies in species’ responses to landscape structure emerge. Second, we present a detailed example providing step‐by‐step methods for application of a species‐centered approach using freely available land‐cover data and recent statistical modeling approaches. Third, we discuss pitfalls in current applications of the approach and recommend avenues for future developments. We conclude that the species‐centered approach offers considerable promise as a means to test whether sensitivity to habitat loss and fragmentation is mediated by phylogenetic, ecological, and life‐history traits. Cross‐species generalities in responses to habitat loss and fragmentation will be challenging to uncover unless landscape mosaics are defined using models that reflect differing species‐specific distributions, functional connectivity, and domains of scale. The emergence of such generalities would not only enhance scientific understanding of biotic processes driving fragmentation effects, but would allow managers to estimate species sensitivities in new regions.     

REVISITING WALLACE'S HAUNT: COALESCENT SIMULATIONS AND COMPARATIVE NICHE MODELING REVEAL HISTORICAL MECHANISMS THAT PROMOTED AVIAN POPULATION DIVERGENCE IN THE MALAY ARCHIPELAGO

Sundaland, a biogeographic region of Southeast Asia, is a major biodiversity hotspot. However, little is known about the relative importance of Pleistocene habitat barriers and rivers in structuring populations and promoting diversification here. We sampled 16 lowland rainforest bird species primarily from peninsular Malaysia and Borneo to test the long‐standing hypothesis that animals on different Sundaic landmasses intermixed extensively when lower sea‐levels during the Last Glacial Maximum (LGM) exposed land‐bridges. This hypothesis was rejected in all but five species through coalescent simulations. Furthermore, we detected a range of phylogeographic patterns; Bornean populations are often genetically distinct from each other, despite their current habitat connectivity. Environmental niche modeling showed that the presence of unsuitable habitats between western and eastern Sundaland during the LGM coincided with deeper interpopulation genetic divergences. The location of this habitat barrier had been hypothesized previously based on other evidence. Paleo‐riverine barriers are unlikely to have produced such a pattern, but we cannot rule out that they acted with habitat changes to impede population exchanges across the Sunda shelf. The distinctiveness of northeastern Borneo populations may be underlied by a combination of factors such as rivers, LGM expansion of montane forests and other aspects of regional physiography.