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1.
Poleward shifts in breeding bird distributions in New York State   总被引:1,自引:0,他引:1  
Like other regions of the northern hemisphere, the northeastern United States has experienced a general increase in regional temperatures over the past 20 years. Quantifying the ecological implications of these changing temperatures has been severely constrained by a lack of multispecies distributional data by which to compare long-term changes. We used the New York State Breeding Bird Atlas, a statewide survey of 5332 25 km2 blocks surveyed in 1980–1985 and 2000–2005, to test several predictions that the birds of New York State are responding to climate change. Our objective was to use an information-theoretic approach to analyze changes in three geographic range characteristics, the center of occurrence, range boundaries, and states of occurrence to address several predictions that the birds of New York State are moving polewards and up in elevation. As expected, we found all bird species ( n =129) included in this analysis showed an average northward range shift in their mean latitude of 3.58 km [ Prob ( H a|data)=0.87)]. Past studies have found that northern range boundaries are more likely to be influenced by climatic factors than southern range boundaries. Consequently, we predicted that northward shifts would be more evident in northern as opposed to southern range boundaries. We found, however, that the southern range boundaries of northerly birds moved northward by 11.4 km [ n =43, Prob ( H a|data)=0.92], but this pattern was less evident in northern range boundaries of southerly birds. In addition, we found that bird species demonstrated a general shift downhill in their mean elevation, but demonstrated little change in their elevational boundaries. The repeated pattern of a predicted northward shift in bird ranges in various geographic regions of the world provides compelling evidence that climate change is driving range shifts.  相似文献   

2.
  总被引:5,自引:0,他引:5  
Because hereditary symbiont transmission is normally absent in the mutualism of legume plants and root‐nodule bacteria (rhizobia), dispersing plants may often arrive at new habitats where mutualist partners are too rare to provide full benefits. Factors governing invasion success were explored by analysing a system of two coupled pairwise competition models: a legume invader competing with a resident non‐mutualistic plant, and a rhizobial population competing with a resident population of nonsymbiotic bacteria. The non‐linear dependence of benefits on partner abundance in this mutualism creates the possibility of two alternative population size equilibria, so that a threshold density can exist for invasion. If legumes and rhizobia exceed a critical population size, both species achieve rapid population growth, while if initial densities of both species are below their respective thresholds, they remain rare and are thus vulnerable to extinction in the presence of competitors. Overall, the results indicate that legumes may often fail at colonization attempts within habitats where mutualist partners are scarce. Data on legume prevalence in island floras and rates of geographical spread by legume weeds are consistent with this inference. Predictive insights about invasiveness may emerge from comparative research on key traits identified by the model, especially the shape of the function determining the number of nodules formed at low rhizobial density.  相似文献   

3.
    
If we adopt a statistical approach to systematics and recognize that phylogenies are estimated with error, then we can begin to explore statistically justified methods for testing a variety of comparative hypotheses, including those concerning the evolution of life-history characters and biogeography. In this paper I examine two biogeographic hypotheses concerning the rodent genus Microtus. Like many comparative hypotheses, these can be phrased so that each predicts the existence of a particular monophyletic group. Neither of the predicted groups appear on the single best phylogeny as determined by both Dollo parsimony and maximum likelihood analysis of restriction site maps of mitochondrial DNA. Simulation studies, however, suggest that often the best phylogeny from a single data set has only a low probability of being exactly correct. We must also examine those trees that, while not the single best-supported tree, are not rejected by the data. If we find the best phylogeny for which a hypothesis is satisfied, then likelihood methods can be used to test whether that phylogeny is significantly worse then the best tree overall. If that tree can be rejected, then so can the hypothesis. Computational constraints limit the use of likelihood methods for searching among topologies, so parsimony is used as a data exploratory tool. One of the predicted groups cannot be rejected, even though the most parsimonious tree which includes that group requires 11 more steps than does the most parsimonious tree.  相似文献   

4.
    
Global climate warming is predicted to lead to global and regional changes in the distribution of organisms. One influential approach to test this prediction using temporally repeated mapping surveys of organisms was suggested in a seminal paper by Thomas & Lennon (1999, Nature). The Thomas & Lennon approach corrects observed changes in the range margin for changes in the range size, and thus potentially controls for other broad‐scale environmental changes between surveys, however the approach does not necessarily account for potential biases in sampling effort. To verify whether the issue of variation in sampling effort affects empirical estimates of shifts in range margin, we reanalyzed all three published studies exploring range margin changes of breeding birds in Great Britain (GB), Finland, and New York State (NY). Accounting for changes in survey effort on range margins lowered the estimated shift for breeding birds in New York, but the shift remained statistically significant. For Great Britain and Finland, for which no direct estimate of survey effort is available, we used species richness (a strong correlate of survey effort in New York) as a proxy and found that in both cases the estimated shift in range margin was significantly reduced and became nonsignificant. To understand how robust the approach is to sampling biases, we use a simulation model to show that the Thomas & Lennon approach is, under certain conditions, sensitive to changes in detection probability (probability to detect true occupancy) which in turn may be affected by changes in surveying effort between surveys. We thus found evidence that temporal changes in the distribution of breeding birds based on repeated mapping surveys may be inflated by changes in survey effort along range boundaries. We discuss possible approaches to deal with this issue in the analysis and design of national or regional surveys.  相似文献   

5.
1. Abundance-occupancy relationships comprise some of the most general and well-explored patterns in macro-ecology. The theory governing these relationships predicts that species will exhibit a positive interspecific and intraspecific relationship between regional occupancy and local abundance. Abundance-occupancy relationships have important implications in using distributional surveys, such as atlases, to understand and document large-scale population dynamics and the consequences of environmental change. A basic need for interpreting such data bases is a better understanding of whether changes in regional occupancy reflect changes in local abundance across species of varying life-history characteristics. 2. Our objective was to test the predictions of the abundance-occupancy rule using two independent data sets, the New York State Breeding Bird Atlas and the North American Breeding Bird Survey. The New York State Breeding Bird Atlas consists of 5332 25-km(2) survey blocks and is one of the first atlases in the USA to be completed for two time periods (1980-85 and 2000-05). The North American Breeding Survey is a large-scale annual survey intended to document the relative abundance and population change of songbirds throughout the USA. 3. We found that regional occupancy was positively correlated with relative abundance across 98 (beta = 0.60 +/- 0.11 SE, P < 0.001, R(2) = 0.60) and 85 species (beta = 0.67 +/- 0.06 SE, P < 0.001, R(2) = 0.57) in two separate time periods. This relationship proved stable over time and was notably consistent between breeding habitat groups and migratory guilds. 4. Between 1980 and 2005, changes in regional occupancy were highly correlated with long-term abundance trend estimates for 75 species (beta = 5.73 +/- 0.24 SE, P < 0.001, R(2) = 0.88). Over a 20-year period, woodland and resident birds showed an increase in occupancy while grassland species showed the greatest decline; these patterns were mirrored by changes in local abundance. 5. Although exceptions existed, we found most changes in occupancy parallel changes in local abundance. These findings support the basic predictions of the abundance-occupancy rule and demonstrate its consistency and stability in species and groups of varying life-history characteristics.  相似文献   

6.
Connecting geographical distributions with population processes   总被引:2,自引:0,他引:2  
The geographical distribution of a species is determined by a large number of complex processes operating over spatial scales spanning 10 orders of magnitude. Patterns in population processes have been described at numerous scales. We show that two patterns, measured at different scales, jointly allow us to infer heretofore unknown patterns in the distribution of demographic patterns across the geographical range of a species. The resulting model describes three fundamentally different modes of geographical variation in vital rates of populations. One mode is characterized by a positive nonlinear relationship between the maximum rate of population growth and the intensity of intraspecific competition across a geographical range. That is, populations that grow rapidly are also those where individuals experience the greatest per capita negative effect of the presence of other individuals. The second mode of behaviour is described by a negative nonlinear relationship between maximum growth rate and density dependence. Under this scenario, populations with low capacity to grow rapidly have highest intensities of intraspecific competitive effects. A third mode of behaviour is characterized by a weak positive relationship between growth rate and intraspecific competition, with very little geographical variation in maximum growth rate. A survey of studies relating temporal means and variances in population abundance for a variety of species indicate that the second mode of geographical variation in population dynamics across species ranges is the most common, though a few species appear to be characterized by the third mode.  相似文献   

7.
    
Climate change disproportionately threatens alpine species, by reducing available habitat and by isolating their populations. These pressures are particularly relevant for rear-edge populations, which typically occupy more marginal habitat compared to populations at the core of species' ranges. We studied Caucasian grouse Lyrurus mlokosiewiczi in the Caucasus ecoregion, a global biodiversity hotspot where this species is endemic, to understand potential climate change impacts on the species. Specifically, we assessed how climate change impacts rear-edge populations and how important these populations are for understanding range shifts and adaptive capacity under climate change. We used maximum entropy modeling to assess changes in the distribution of climatically suitable habitat under present and 2070 climate conditions for the representative concentration pathways 8.5 (RCP8.5). Our results revealed that ignoring rear-edge populations leads to a significant underestimation of the future range (by about 14,700 km2). Rear-edge populations were better adapted to warmer climates compared to core populations, and ignoring them, therefore, also underestimates adaptive capacity. Preventing the loss of rear-edge populations should, therefore, be a priority for conservation planning in the face of climate change. Because the Caucasian grouse is associated with alpine mountain tops, conservation should focus on establishing connectivity between rear-edge and core populations (e.g., via transboundary corridors or assisted colonizations). Our study reveals how species distribution modeling can highlight the importance of rear-edge populations for mitigating climate change impacts on species of conservation concern.  相似文献   

8.
  总被引:3,自引:0,他引:3  
Abstract.— Pylogenetic analyses and molecular dating estimates based on chloroplast DNA sequences were used to establish the relationships of the southern and Southeast Asian Crypteroniaceae and elucidate their biogeographic history. Maximum parsimony and likelihood analyses of rbc L sequences suggested that Crypteroniaceae should be restricted to Crypteronia , Axinandra , and Dactylocladus and that Crypteroniaceae, so defined, are sister to a clade formed by three small African taxa (Oliniaceae, Penaeaceae, and Rhynchocalycaceae) and the monotypic Central and South American Alzateaceae. Three molecular dating approaches (maximum-likelihood under a molecular clock, Langley-Fitch, and penalized-likelihood) were used to infer the age of Crypteroniaceae using both paleobotanic and geologic calibrations. Comparisons among these three methods revealed significant lineage effects in rbc L sequences. Clock-independent dating estimates suggested that divergence of Crypteroniaceae from its African and South American relatives coincided with the breakup of Gondwana, and that India likely served as a \"raft\" transporting Crypteroniaceae to Asia, with later expansion to Southeast Asia. To our knowledge, Crypteroniaceae are the first plant group for which the out-of-India hypothesis is well corroborated by molecular-based estimates of divergence times.  相似文献   

9.
This paper reviews the consequences of forest fragmentation for the dynamics of bird populations. Owing to high mobility and large home ranges, birds usually perceive fragmented forests in a finegrained manner, i.e. embrace several forest fragments in functional home ranges. On a regional scale, however, coarse-grained clusters of fine-grained fragments (hierarchical fragmentation may sub-divide bird populations into isolated demes, which enter a domain of metapopulation dynamics. Distinctions are made between pure distance-area or population-level effects and more indirect community-level effects due to changes in landscape composition. Distance-area effects, such as insularization and decreasing fragment size, directly prevent dispersal and reduce population size. Landscape effects, such as reduced fragment-matrix and interior-edge ratios, increase the pressure from surrounding predators, competitors, parasites and disease. In short, forest fragmentation can be viewed as a two-step process. Initially, fine-grained fragmentation triggers distance-area and landscape effects on a local scale, which in turn, results in a range retraction of a population to non-fragmented or less fragmented parts of a region. At a certain point, non-fragmented areas become so widely spaced out that regional distance-area effects come into operation, giving rise to metapopulation dynamics. Although few bird metapopulations have yet been documented, metapopulation dynamics probably is a common characteristic of bird populations confined to 'hierarchical' fragmented forests.  相似文献   

10.
11.
12.
    
The additive hazards model specifies the effect of covariates on the hazard in an additive way, in contrast to the popular Cox model, in which it is multiplicative. As the non-parametric model, additive hazards offer a very flexible way of modeling time-varying covariate effects. It is most commonly estimated by ordinary least squares. In this paper, we consider the case where covariates are bounded, and derive the maximum likelihood estimator under the constraint that the hazard is non-negative for all covariate values in their domain. We show that the maximum likelihood estimator may be obtained by separately maximizing the log-likelihood contribution of each event time point, and we show that the maximizing problem is equivalent to fitting a series of Poisson regression models with an identity link under non-negativity constraints. We derive an analytic solution to the maximum likelihood estimator. We contrast the maximum likelihood estimator with the ordinary least-squares estimator in a simulation study and show that the maximum likelihood estimator has smaller mean squared error than the ordinary least-squares estimator. An illustration with data on patients with carcinoma of the oropharynx is provided.  相似文献   

13.
The evolution of the diverse flora in the Lower Volga Valley (LVV) (southwest Russia) is complex due to the composite geomorphology and tectonic history of the Caspian Sea and adjacent areas. In the absence of phylogenetic studies and temporal information, we implemented a maximum likelihood (ML) approach and stochastic character mapping reconstruction aiming at recovering historical signals from species occurrence data. A taxon-area matrix of 13 floristic areas and 1018 extant species was constructed and analyzed with RAxML and Mesquite. Additionally, we simulated scenarios with numbers of hypothetical extinct taxa from an unknown palaeoflora that occupied the areas before the dramatic transgression and regression events that have occurred from the Pleistocene to the present day. The flora occurring strictly along the river valley and delta appear to be younger than that of adjacent steppes and desert-like regions, regardless of the chronology of transgression and regression events that led to the geomorphological formation of the LVV. This result is also supported when hypothetical extinct taxa are included in the analyses. The history of each species was inferred by using a stochastic character mapping reconstruction method as implemented in Mesquite. Individual histories appear to be independent from one another and have been shaped by repeated dispersal and extinction events. These reconstructions provide testable hypotheses for more in-depth investigations of their population structure and dynamics.  相似文献   

14.
    
Rising temperatures caused by climate change could negatively alter plant ecosystems if temperatures exceed optimal temperatures for carbon gain. Such changes may threaten temperature‐sensitive species, causing local extinctions and range migrations. This study examined the optimal temperature of net photosynthesis (Topt) of two boreal and four temperate deciduous tree species grown in the field in northern Minnesota, United States under two contrasting temperature regimes. We hypothesized that Topt would be higher in temperate than co‐occurring boreal species, with temperate species exhibiting greater plasticity in Topt, resulting in better acclimation to elevated temperatures. The chamberless experiment, located at two sites in both open and understory conditions, continuously warmed plants and soils during three growing seasons. Results show a modest, but significant shift in Topt of 1.1 ± 0.21 °C on average for plants subjected to a mean 2.9 ± 0.01 °C warming during midday hours in summer, and shifts with warming were unrelated to species native ranges. The 1.1 °C shift in Topt with 2.9 °C warming might be interpreted as suggesting limited capacity to shift temperature response functions to better match changes in temperature. However, Topt of warmed plants was as well‐matched with prior midday temperatures as Topt of plants in the ambient treatment, and Topt in both treatments was at a level where realized photosynthesis was within 90–95% of maximum. These results suggest that seedlings of all species were close to optimizing photosynthetic temperature responses, and equally so in both temperature treatments. Our study suggests that temperate and boreal species have considerable capacity to match their photosynthetic temperature response functions to prevailing growing season temperatures that occur today and to those that will likely occur in the coming decades under climate change.  相似文献   

15.
16.
Kluth C  Bruelheide H 《Oecologia》2005,145(3):382-393
The central-marginal model assumes unfavourable and more variable environmental conditions at the periphery of a species’ distribution range to negatively affect demographic transition rates, finally resulting in reduced population sizes and densities. Previous studies on density-dependence as a crucial factor regulating plant population growth have mainly focussed on fecundity and survival. Our objective is to analyse density-dependence in combination with the effect of inter-annual variation and range position on all life stages of an annual plant species, Hornungia petraea, including germination and seed incorporation into the seed bank. As previous studies on H. petraea had revealed a pattern opposite to existing theory with lower population densities at the distribution centre in Italy than at the periphery in Germany, we hypothesised that (1) demographic transition rates are lower, (2) the inter-annual variation in demographic transition rates is higher and (3) the intensity of density-dependence is weaker in Italy than in Germany. To analyse demographic transition rates, we used an autoregressive covariance strategy for repeated measures including density and inter-annual variation. All the three hypotheses were confirmed, but the impact of range position, density-dependence and inter-annual variation differed among the transition steps. All transition rates except fecundity were higher in the German populations than in the Italian populations. Germination rate and incorporation rate into the seed bank were strongly density-dependent. Central populations showed a larger inter-annual variation in fecundity and winter survival rate. Winter survival rate was the only transition step with a stronger density-dependence in peripheral populations. In most cases, these differences between distribution centre and periphery would not have emerged without taking density-dependence and inter-annual variation into account. We conclude that including range position, inter-annual variation and density-dependence in one single statistical model is an important tool for the interpretation of demographic patterns regarding the central-marginal model. Electronic Supplementary Material Supplementary material is available for this article at  相似文献   

17.
    
Species distributions are often simplified to binary representations of the ranges where they are present and absent. It is then common to look for changes in these ranges as indicators of the effects of climate change, the expansion or control of invasive species or the impact of human land‐use changes. We argue that there are inherent problems with this approach, and more emphasis should be placed on species relative abundance rather than just presence. The sampling effort required to be confident of absence is often impractical to achieve, and estimates of species range changes based on survey data are therefore inherently sensitive to sampling intensity. Species niches estimated using presence‐absence or presence‐only models are broader than those for abundance and may exaggerate the viability of small marginal sink populations. We demonstrate that it is possible to transform models of predicted probability of presence to expected abundance if the sampling intensity is known. Using case studies of Antarctic mosses and temperate rain forest trees, we demonstrate additional insights into biotic change that can be gained using this method. While species becoming locally extinct or colonising new areas are extreme and obviously important impacts of global environmental change, changes in abundance could still signal important changes in biological systems and be an early warning indicator of larger future changes.  相似文献   

18.
19.
Hierarchical likelihood approach for frailty models   总被引:5,自引:0,他引:5  
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20.
    
Manier MK  Arnold SJ 《Molecular ecology》2005,14(13):3965-3976
Population genetic structure can be shaped by multiple ecological and evolutionary factors, but the genetic consequences of these factors for multiple species inhabiting the same environment remain unexplored. We used microsatellite markers to examine the population structures of two coexisting species of garter snake, Thamnophis elegans and Thamnophis sirtalis, to determine if shared landscape and biology imposed similar population genetic structures. These snakes inhabit a series of ponds, lakes and flooded meadows in northern California and tend to converge on prey type wherever they coexist. Both garter snakes had comparable effective population sizes and bidirectional migration rates (estimated using a maximum-likelihood method based on the coalescent) with low but significant levels of genetic differentiation (F(ST) = 0.024 for T. elegans and 0.035 for T. sirtalis). Asymmetrical gene flow revealed large source populations for both species as well as potential sinks, suggesting frequent extinction-recolonization and metapopulation dynamics. In addition, we found a significant correlation between their genetic structures based on both pairwise F(ST)s for shared populations (P = 0.009) and for bidirectional migration rates (P = 0.024). Possible ecological and evolutionary factors influencing similarities and differences in genetic structure for the two species are discussed. Genetic measures of effective population size and migration rates obtained in this study are also compared with estimates obtained from mark-recapture data.  相似文献   

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