Corals as light collectors: an integrating sphere approach

An integrating sphere was used to estimate the fraction of the incident quantum flux absorbed by a coral colony placed within it. This method allows one to examine the in vivo light absorption of intact coral colonies. We used this method to study effects of colony morphology, size, and photoacclimation status on the light harvesting efficiency by the zooxanthellae. Light absorption per unit of coral surface area decreased with increase in colony size, with a clear effect of different coral morphologies. In branched colonies, shading among branches reduced the absorbed light per unit area and per zooxanthellae. Photoacclimation to low light resulted in increased cellular chlorophyll concentrations in the zooxanthellae. In shade acclimated colonies, areal chlorophyll concentrations increased significantly, leading to more overlap among the optical cross-sections of pigments within cells and mutual shading among cells. These package effects showed up as a decrease in the in vivo, chlorophyll-a specific, spectral average, effective optical cross-section, a*. An integrating sphere is a useful tool for collecting optical information on corals.     

Location and volume of the active site of chymotrypsin

The active site of chymotrypsin molecule (approximated by a sphere with radius of 20 A) was taken as the largest cavity on the enzyme surface. The volume inside the approximating sphere is sufficient for placement of 95% of non-hydrogen atoms of the enzyme. The active site cavity is localized in a spherical sector with solid angle of 80 degrees whose axis passes through the CB-atom of the Ser195 residue. The volume of the active site cavity is about 2700 A(3) (8% of the volume of the approximating sphere) as computed by the Monte-Carlo method from known X-ray data. The size and shape of the active site cavity is sufficient for entrance of significantly large fragments (more than 60 non-hydrogen atoms) of the substrate molecule. At the active site cavity bottom, there is a narrow compartment adjacent to an oxy-anion hollow and accessible to water but not to substrate molecules. The water molecules inside this narrow compartment can take part in heat exchange with the external medium during different steps of the enzymatic process.     

A computer model of temperature distribution inside a lossy sphere after microwave radiation

The temperature distribution inside a lossy sphere resulting from the absorption of microwave energy was approximated by successive numerical iterations, of the thermal energy equation. Heat transfer within the sphere by conduction was considered. In the model energy was not dissipated by convection but was contained in the sphere for over 200 seconds. Exposure of a 5-cm sphere to 3,000 MHz at 30 mW/cm² for 200 seconds was calculated to produce a temperature rise of 0.56°C near the front surface.     

鸡蛋胚下表层卵黄DNA的提取方法

利用Ficoll-400不连续密度梯度离心将受精和未受精鸡蛋的胚下表层卵黄进行纯化, 显微镜观察表明卵黄球形态良好, 没有胚细胞的存在.然后利用较高浓度的蛋白酶K消化,较长时间的酚抽提,最后提取了DNA. 电泳显示DNA条带清晰.该方法简便快速,从每个鸡蛋的胚下表层卵黄可回收10 ng DNA.     

The health sphere beyond borders: Coverage portability and justice in a global space

Medical coverage often stops at borders, for both travellers and long‐term migrants. Such patchiness imposes a de facto limit on free movement. This article considers this phenomenon not as a mere policy choice or technical matter, but as a form of territorial discrimination that is incoherent and even unjust. This legacy of nationally bounded social citizenship rests on a mistaken version of solidarity. Moreover, with growing mobility and rising expectations of medical coverage around the world, the fragmenting of safety nets by the political honeycomb of statehood will become a vexing problem in coming decades. A proper understanding of the health sphere not only can justify incremental reforms that lessen territorial discrimination, without impairing either solidarity or sustainability. It also foreshadows a radically different vision of how social provision might work in a future global space beyond the nation‐state.     

On Stereological Estimation of Second-order Characteristics and of the Hard-core Distance of Systems of Sphere Centres

For planar and thin sections of sphere systems integral equations are given which connect second-order quantities of the point process of sphere centres with second-order quantities of the point process of intersection circle centres. For special point process models, which serve as sphere centres, the planar second-order quantities are calculated and discussed. Some simple stereo-logical formulae for the estimation of the hard-core distance are given when the sphere centres form a hard-core process.     

Inequality from the top down and bottom up: towards a revised Wacquant

In this response I focus on two major themes in Wacquant's trilogy: (1) punishment and the state; and (2) territorial stigmatization. I discuss evidence that supports elements of Wacquant's argument, while at the same time demonstrating the need for an account that brings mediating institutional processes of the state, violence, the civil sphere and neighbourhood mechanisms more fully into the larger theoretical picture. I conclude that ‘bottom-up’ processes of inequality must be integrated with ‘top-down’ forces of the state to advance our theoretical understanding of penality and spatial marginality in federated and unitary governments alike.     

正廿面体病毒的轴长,三角形剖分数和壳粒间距之间关系的研究

本文根据正廿面体病毒具有５：３：２旋转对称轴特性,分别计算出各条对称轴的轴长,并相应推导出：这里ａ５,ａ３和ａ２分别是５－,３－和２－重轴的长度,ｌ是任意两相邻壳粒间的距离,Ｔ是三角形剖分数。同时对已报道过的又采用新的方法给予推导和验证,这里,是病毒等效球的平均半径。通过上述公式深入地揭示了病毒的大小、轴长与三角形剖分数和壳粒间距之间的关系。     

Evidence for a Viral Macronuclear Endosymbiont in Paramecium caudatum

ABSTRACT. Some strains of P. caudatum contain macronuclear inclusion bodies that are morphologically distinct from bacteria. They vary in number as well as in size in each macronucleus. The inclusion bodies are basically divided into peripheral and inner areas. The peripheral area consists of fibrillar proteins of 22–24 nm in thickness, which are specifically stained with fast green in 45% acetic acid. On the other hand, chromatin-like granules are within the inner area of large inclusion bodies. The granules within the inner area changed their distribution depending upon the physiological state of their host cells. Transplantation experiments and crossbreeding analyses revealed that genetic factors responsible for the multiplication of the inclusion bodies can 'infect' other macronuclei (or cells) via the cytoplasm. These results suggest that the inclusion bodies are a non-bacterial macronuclear endosymbiont, possibly produced by a virus or a virus-like element.     

Estimation of the free energy of hard-sphere crystals via a free-volume approach

The free energies of the face-centred (FCC) and base-centred cubic (BCC) hard-sphere (HS) crystals have been estimated via the free-volume approach. We present two free-volume equations for the FCC and BCC HS crystals, which are different from those predicted by Velasco et al. [Langmuir 14(19) (1998), 5652–5655], and the equations exhibit more accuracy than Velasco et al.'s equations. The limitation of using the free-volume approach was assessed by comparing with true free energies obtained by other well-known methods, and possible improvement and application are discussed.     

Is it always correct to use the Marcus cross relation for calculations of electron self-exchange rates?

The rate constant of the electron self-exchange reaction, which proceeds via the outer sphere mechanism, k₁₁, of a redox couple, reflects the basic tendency of the reaction to participate in redox processes. Often k₁₁ is derived from the rate constant of a redox reaction, k₁₂, by applying the Marcus cross relation: k₁₂ = (k₁₁k₂₂K₁₂f₁₂)^1/2W₁₂. This derivation is based on the assumption that the products of the cross reaction are formed in their ground states. However, the k₁₁ values obtained by this method for several redox systems, e.g. for [Co(NH₃)₆]^3+/2+, Cu^2+/+(aq) and Eu^3+/2+(aq), depend strongly on the redox reaction studied for its derivation. It is proposed that these discrepancies are due to the formation, in some of these reactions, of products in vibrationally excited states and/or as isomers of the final products. Thus, the lowest value of k₁₁ obtained experimentally is either correct or an upper limit for the correct value if correct k₂₂ are used.     

Effect of circular permutation on the structure and function of type 1 blue copper center in azurin

Type 1 copper (T1Cu) proteins are electron transfer (ET) proteins involved in many important biological processes. While the effects of changing primary and secondary coordination spheres in the T1Cu ET function have been extensively studied, few report has explored the effect of the overall protein structural perturbation on active site configuration or reduction potential of the protein, even though the protein scaffold has been proposed to play a critical role in enforcing the entatic or “rack‐induced” state for ET functions. We herein report circular permutation of azurin by linking the N‐ and C‐termini and creating new termini in the loops between 1^st and 2^nd β strands or between 3^rd and 4^th β strands. Characterization by electronic absorption, electron paramagnetic spectroscopies, as well as crystallography and cyclic voltammetry revealed that, while the overall structure and the primary coordination sphere of the circular permutated azurins remain the same as those of native azurin, their reduction potentials increased by 18 and 124 mV over that of WTAz. Such increases in reduction potentials can be attributed to subtle differences in the hydrogen‐bonding network in secondary coordination sphere around the T1Cu center.     

Rotational diffusion coefficients of a small,spherical subunit flexibly tethered to a larger sphere

The rotational diffusion coefficients of a small spherical particle, which is flexibly anchored to the surface of a much larger sphere, are calculated using the hydrodynamic theory of segmentally flexible particles. The model is intended for representing the rotational mobility of a small residue or chromophore in the surface of a globular macromolecule. The coefficients are found to be essentially independent, or to vary slowly with the relative dispositions of the spheres. They are also insensitive to the size ratio when this ratio is high enough. These findings support the use of an approximative treatment proposed by Wegener in which the small conformation dependence is averaged out. The resulting averages are tentatively used in the Lipari-Szabo model for restricted rotational diffusion in a cone. It is concluded that the rotational relaxation of the small sphere has three components: (i) a torsional rotation with the same diffusion coefficient as the free sphere; (ii) a perpendicular wobbling with a diffusion coefficient several (five in a typical case) times smaller; and (iii) an overall rotation of the whole macromolecule, that will appear in a much longer time scale if the two spheres have quite distinct sizes.