Genetic admixture and population substructure in Guanacaste Costa Rica

The population of Costa Rica (CR) represents an admixture of major continental populations. An investigation of the CR population structure would provide an important foundation for mapping genetic variants underlying common diseases and traits. We conducted an analysis of 1,301 women from the Guanacaste region of CR using 27,904 single nucleotide polymorphisms (SNPs) genotyped on a custom Illumina InfiniumII iSelect chip. The program STRUCTURE was used to compare the CR Guanacaste sample with four continental reference samples, including HapMap Europeans (CEU), East Asians (JPT+CHB), West African Yoruba (YRI), as well as Native Americans (NA) from the Illumina iControl database. Our results show that the CR Guanacaste sample comprises a three-way admixture estimated to be 43% European, 38% Native American and 15% West African. An estimated 4% residual Asian ancestry may be within the error range. Results from principal components analysis reveal a correlation between genetic and geographic distance. The magnitude of linkage disequilibrium (LD) measured by the number of tagging SNPs required to cover the same region in the genome in the CR Guanacaste sample appeared to be weaker than that observed in CEU, JPT+CHB and NA reference samples but stronger than that of the HapMap YRI sample. Based on the clustering pattern observed in both STRUCTURE and principal components analysis, two subpopulations were identified that differ by approximately 20% in LD block size averaged over all LD blocks identified by Haploview. We also show in a simulated association study conducted within the two subpopulations, that the failure to account for population stratification (PS) could lead to a noticeable inflation in the false positive rate. However, we further demonstrate that existing PS adjustment approaches can reduce the inflation to an acceptable level for gene discovery.     

Arthropod collection for biodiversity prospection in the Guanacaste Conservation Area, Costa Rica

This study describes the results and collection practices for obtaining arthropod samples to be studied as potential sources of new medicines in a bioprospecting effort. From 1994 to 1998, 1800 arthropod samples of 6-10 g were collected in 21 sites of the Area de Conservaci6n Guancaste (A.C.G) in Northwestern Costa Rica. The samples corresponded to 642 species distributed in 21 orders and 95 families. Most of the collections were obtained in the rainy season and in the tropical rainforest and dry forest of the ACG. Samples were obtained from a diversity of arthropod orders: 49.72% of the samples collected corresponded to Lepidoptera, 15.75% to Coleoptera, 13.33% to Hymenoptera, 11.43% to Orthoptera, 6.75% to Hemiptera, 3.20% to Homoptera and 7.89% to other groups. Different life stages per arthropod species were obtained in most samples, 54.26% of them were adults, 19.90% corresponded to larvae, 6.46% to pupae, 6.12% to pre-pupae, 2.07% to nymphs and 3.74% to other stages. Other materials associated to insects like frass represented 11.20% of the samples collected. Several collecting methods were explored, based on the possibility of accessing the necessary amount of material causing the less impact. Most of the samples were obtained by manual collection (44.38%),. followed by insects breeding (25.73%), light traps (18.80%), different types of nets (10.52%) and other methods (0.16%). In general, collecting methods and practices excluded the use of solvents, mixing different species or life stages in the same bag, which might have introduced undesirable effects in the screening systems for new compounds. Based on the possibility of finding new chemicals in similar samples associated to one arthropod species, the collecting strategy included the generation of several samples from same species, separated according to differences in life stages, collecting sites, ecosystems. seasons, feeding materials or behavioral aspects. This strategy allowed the generation a larger number of samples submitted to bioassays in different areas of pharmaceutical research.     

Phytogeography of dry ecosystems in the ignimbrite meseta of Guanacaste, Costa Rica]

The dry ecosystems in the ignimbrite meseta of Guanacaste, northwest Costa Rica is mapped. Plant community distribution is intimately related to the type of relief, soils and humidity. In the upper parts of the meseta, characterised by soils which are stony, sandy, and acidic, herbacious vegetation such as savanna and edaphic steppe is dominant. By contrast, woodland is found on the deep and organically rich soils of the valley floors. Within the herbaceous formations dwarf varieties of Byrsonima crassifolia (nance), Curatella americana (raspa guacal) and Quercus oleoides (encino) are found because of the acid and infertile soils.     

Population trends of the mantled howler groups of La Pacifica,Guanacaste, Costa Rica

A complete survey of La Pacifica in Guanacaste Province, Costa Rica was conducted in July 1984 in order to determine whether the howler (Alouatta palliata) population had declined since 1972 as a result of deforestation. During the 6-day survey, 257 howlers were located, representing 16 different social groupings and nine solitary animals. The total number of howlers, the number and location of groups, and the age-sex composition were very similar to a 1972–1976 survey of the same population. Age-sex composition of La Pacifica howler groups was similar to those of another population of mantled howlers in Costa Rica and of populations in Mexico and in Panama, although La Pacifica had a higher mean number of adult females per group. There was no evidence to support the hypothesis that the La Pacifica howler population has declined in recent times.     

Male and mosquito larvae survey at the Arenal-Tempisque irrigation project, Guanacaste, Costa Rica

A monitoring of male and larvae of mosquitoes was conducted during 1991-1994, at the Irrigation Project in Arenal-Tempisque, Guanacaste, Costa Rica. CDC CO2-baited traps were used to collect adults of mosquitoes and dips were used for immatures of culicids. A total of 1,480 larvae and 1,129 males of culicids were identified resulting in, Aedes with 6 species, Anopheles, Mansonia and Psorophora with 2 species, Culex with 21 species and Haemagogus, Limatus, Toxorhynchites and Uranotaenia with only one species each. The results indicate that, as occurred in other countries, irrigation projects must be under strict monitoring programs to prevent and control possible health problems in which mosquitoes act as vectors.     

The soil C pool in different agroecosystems derived from the dry tropical forest of Guanacaste, Costa Rica

Inventories of soil C pools are still lacking from tropical sites. Our objective was to assess total C and N concentrations in the different mineral soil fractions down to 50 cm depth in relation to selected physical and chemical properties of 5 ecosystems at La Flor Sustainable Center in Guanacaste, Costa Rica. The ecosystems studied were a derived savanna with scattered trees, a gallery forest, an abandoned Mango indigofera L. plantation, a Citrus sp. plantation, and a Saccharum officinarum L. (sugarcane) plantation. Significant differences were found for the main fixed factor ecosystem for all variables analyzed (ANOVA). The TSC concentration was significantly higher in the sugarcane plantation compared to the rest of land use systems. The TSC concentration decreased significantly with increase in depth in all ecosystems and ranged from 20.3–38.3 to 4.3–20.9 g kg⁻¹ in the 0–10 and 40–50 cm depth, respectively. In all cases, the clay + silt fraction (<50 μm) contained the highest C concentration. N concentration (0–10 cm depth) at La Flor ranged from 0.32 to 0.19%, and decreased in the order sugarcane > Curatella savanna > Mango and Citrus plantations > gallery forest. A principal component analysis (PCA) performed with all variables studied showed that the ordination of land uses (ecosystems) in the factorial plane defined by the first two axes was significant (Monte Carlo permutation test, P < 0.0001). The highest TSC pool down to 50 cm depth was obtained in the sugarcane plantation (160 Mg C ha⁻¹) while less C was found in the rest of ecosystems, i.e. from 66 (gallery forest) to 80 Mg C ha⁻¹ (Curatella savanna). The TSC concentration obtained in the sugarcane plot is likely the result of the incorporation of surface residues into the soil that would have otherwise been lost through burning, which is the current practice in the region. Further studies on C stabilization in the clay fraction are thus needed to test the hypothesis of soil C enrichment due to residue management. Finally, trade-offs are to be considered for both preservation of the fragile dTf and the productivity of derived land uses that increases soil C at the same time.     

Extensive land use and the logic of the latifundio: A case study in Guanacaste Province,Costa Rica

Traditional explanations of extensive land use on large unproductive estates in Latin American have failed to understand important aspects of the economic and political logic behind such enterprises. This article examines the reasons for the low productivity of cattle ranches over a period which spans the consolidation of haciendas in a frontier zone and their subsequent integration into the international beef market. The persistence of extensive land use in a modern export economy is explained as resulting from characteristics of the world beef market, local ecology, the Costa Rican credit and tax systems, and the social composition and political power of the landowning class.     

Halipegus eschi n. sp. (Digenea: Hemiuridae) in Rana vaillanti from Guanacaste Province, Costa Rica

Halipegus eschi n. sp. is described from the esophagus of Rana vaillanti from Guanacaste Province, Costa Rica. The new species differs from other known species of Halipegus on the basis of relative testis size, lateral extent of the uterus, vitelline follicle arrangement, egg size, and polar filament length.     

Serum lipoproteins in the spiny lobster, Panulirus interruptus.

1. Most of the lipids in the hemolymph of the spiny lobster, Panulirus interruptus, were associated with a high density lipoprotein (HDL3). The lipid of this lipoprotein was composed of phospholipid (88%), sterol (4%) and triglyceride (3%). 2. In animals fed 14C-labeled triglyceride radioactivity was not seen in the serum until 12 hr after feeding. Most of this serum radioactivity was associated with phosphatidyl choline. 3. Electron micrographs showed that negatively stained high density lipoproteins of the lobster had a polymorphic appearance.     

Exploitation of the shrimp trawl fishery in the period 1991-1999 at the Gulf of Nicoya, Costa Rica

In Costa Rica, the Gulf of Nicoya shrimp fishery originated in 1952 and represented one of the most important economic activities in the region. Nevertheless, overfishery reduced the captured volumes to levels that prevent this commercial activity. I analyzed official fishery statistics between 1991 and 1999. These species involved are: two species of white shrimp, (Litopenaeus occidentalis and L. stylirostris), the "titi" shrimp (Xiphopenaeus riveti), the brown shrimp (Farfantepenaeus californiensis), the "pinki" shrimp (F. brevirostris) and the "fidel" shrimp (Solenocera agassizi). All the species reached the Maximum Sustainable Yield in the decades of 1970 and 1980 and are now found at over-exploitation levels. I recommend that this shrimp trawl fishery be completely closed down.     

A management plan for the sport fishery of Parachromis dovii (Pisces: Cichlidae) in Hule lake, Costa Rica

A first attempt to regulate the fishing activity while preserving the species and its habitats is presented for Hule lake. We intensively sampled the guapote between March 1996 and April 1997 using monofilament gill nets and a floating line, collecting 421 individuals. P. dovii biomass was relatively low; this species had a long life cycle (8-10 years) and the growth oscillation was low (C = 0.3). Maximum life expectation was estimated at 12 years and the point of minimum growth coincided with the spawning that takes place between November and December. After spawning, P. dovii take around seven months to reach recruitment size (54.6 mm). The length for sexual maturity was 134 mm Lt, which indicates that this species is viable for reproduction soon after leaving the protection zones around the lagoon. Guapote sport fishing in the Hule lake is in equilibrium, the renewal rate is 80%. An increment in the actual fishery effort is not recommended, since it could seriously affect the natural renewal capacity of the stock.     

Past, present and future of cytogenetics in Costa Rica

This is an overview of the past, present and future of human Cytogenetics in Costa Rica. It started in 1965 at the University of Costa Rica where it has been developed slowly but steadily. There is only one overloaded clinical cytogenetic laboratory in the social security system. The tests currently performed are peripheral blood and blood marrow karyotypes, prenatal cytogenetic diagnosis (amniotic fluid and fetal blood) and less frequently skin biopsies. The task now is to standardize molecular cytogenetic techniques, we are actually working with PRINS in order to study submicroscopic subtelomeric rearrangements associated with mental retardation and other microdeletion syndromes as well.     

Pattern generation in the lobster (Panulirus) stomatogastric ganglion

1. Results from the companion paper were incorporated into a physiologically realistic computer model of the three principal cell types (PD/AB, LP, PY) of the pyloric network in the stomatogastric ganglion. Parameters for the model were mostly calculated (sometimes estimated) from experimental data rather than fitting the model to observed output patterns. 2. The initial run was successful in predicting several features of the pyloric pattern: the observed gap between PD and LP bursts, the appropriate sequence of the activity periods (PD, LP, PY), and a substantial PY burst not properly simulated by an earlier model. 3. The major discrepancy between model and observed patterns was the too-early occurrence of the PY burst, which resulted in a much shortened LP burst. Motivated by this discrepancy, additional investigations were made of PY properties. A hyperpolarization-enabled depolorization-activated hyperpolarizing conductance change was discovered which may make an important contribution to the late phase of PY activity in the normal burst cycle. Addition of this effect to the model brought its predictions more in line with observed patterns. 4. Other discrepancies between model and observation were instructive and are discussed. The findings force a substantial revision in previously held ideas on pattern production in the pyloric system. More weight must be given to functional properties of individual neurons and less to properties arising purely from network interactions. This shift in emphasis may be necessary in more complicated systems as well. 5. An example has been provided of the value quantitative modeling can be to network physiology. Only through rigorous quantitative testing can qualitative theories of how the nervous system operates be substantiated.     

Population ecology and fishery of Cittarium pica (Gastropoda: Trochidae) on the Caribbean coast of Costa Rica

The West Indian Topshell Cittarium pica is artisanally collected on rocky shores along the Caribbean Coast of Costa Rica. There are neither data on the state of its exploitation nor exist any regulation of the fishery From October 2000 to March 2001, the population dynamics of this species were studied at an unexploited and two exploited sites to determine the present impact of the fishery on the resource. Average population density with 14 ind./m2 about three times higher at the unexploited than at the exploited sites. Length-frequency histograms showed a strong shift towards smaller specimens at the exploited sites, which is also reflected in significantly higher rates of total mortality (Z = 4.05 and 4.47) when compared to the unexploited site (Z = 1.47). Von Bertalanffy growth parameters were estimated as k = 0.19-0.28 (yr-1) and L infinity = 104 mm. No significant differences were found among sites. From these values a range of the growth performance index phi was computed (phi = 3.31-3.48) which lies at the lower end of the values reported for other tropical marine gastropods. The size at first maturity for both sexes combined was estimated as 29.20 +/- 1.14 mm. Exploitation rates > 0.6 for both exploited sites and a large fraction of small specimens (< 30 mm) in the catches suggest overexploitation and recruitment overfishing. Based on the estimated maximum sustainable yield we recommend regulative measures for the fishery such as a control of a minimum landing size of 40 mm and a closure of the fishery during its reproductive period (from July to November).     

Variation of thermohaline properties in the Nicoya Gulf, Costa Rica

The time-space behavior of thermohaline properties of the water masses in the Gulf of Nicoya, a tropical estuary in the Costa Rican Pacific coast, was studied by sampling monthly from April 1992 to April 1993. The saline field has a seasonal maximum during April, a month before the maximum temperature is observed. Minimun values were observed during October and November, in the rainy season. A defined surface saline front is located towards the east of Negritos Islands; it is produced by the interaction of freshwater from the Tarcoles River and the oceanic waters that enter through the occidental coast of the gulf. The vertical distribution of temperature and salinity indicates a gulf whose internal area is highly stratified in the rainy season, and much less stratified, or even well mixed in the dry season. The outer area of the Gulf is stratified throughout the year.