Stochastic demography and population dynamics in the red kangaroo Macropus rufus

1.  Many organisms inhabit strongly fluctuating environments but their demography and population dynamics are often analysed using deterministic models and elasticity analysis, where elasticity is defined as the proportional change in population growth rate caused by a proportional change in a vital rate. Deterministic analyses may not necessarily be informative because large variation in a vital rate with a small deterministic elasticity may affect the population growth rate more than a small change in a less variable vital rate having high deterministic elasticity.
2.  We analyse a stochastic environment model of the red kangaroo ( Macropus rufus ), a species inhabiting an environment characterized by unpredictable and highly variable rainfall, and calculate the elasticity of the stochastic growth rate with respect to the mean and variability in vital rates.
3.  Juvenile survival is the most variable vital rate but a proportional change in the mean adult survival rate has a much stronger effect on the stochastic growth rate.
4.  Even if changes in average rainfall have a larger impact on population growth rate, increased variability in rainfall may still be important also in long-lived species. The elasticity with respect to the standard deviation of rainfall is comparable to the mean elasticities of all vital rates but the survival in age class 3 because increased variation in rainfall affects both the mean and variability of vital rates.
5.  Red kangaroos are harvested and, under the current rainfall pattern, an annual harvest fraction of c . 20% would yield a stochastic growth rate about unity. However, if average rainfall drops by more than c . 10%, any level of harvesting may be unsustainable, emphasizing the need for integrating climate change predictions in population management and increase our understanding of how environmental stochasticity translates into population growth rate.     

Development of secretory ability in the spermatheca of the migratory grasshopper, Melanoplus sanguinipes

During the first week of adult life, the protein content of the spermatheca increases by about 45% but the carbohydrate content does not change significantly. Incorporation of radiolabelled leucine into protein is high in newly emerged females but by day 1 has declined to about two-thirds the initial level, where it then remains. With SDS-PAGE about 30 protein bands separate, including six glycoprotein fractions. All bands are present throughout sexual maturation and except for one (at 25 Kd), show little change in quantity during this period. Allatectomy or hormone replacement therapy has little effect on the parameters measured and it is concluded that the development of secretory activity in the spermatheca is not controlled by juvenile hormone.     

C pigment locus mutants of the fowl produce enzymatically inactive tyrosinase-like molecules

Three albino mutants of the fowl were tested for tyrosinase activity. Two of these mutants (c and ca) are alleles at the autosomal C locus, while the third mutant (sal) is sex-linked. Both the standard type, E, and sal are tyrosinase positive whereas the two C mutants are tyrosinase negative. Anti-chicken tyrosinase mouse serum was produced and all four genotypes were found to have cross-reacting material to this antiserum. Tyrosinase from the standard type was isolated and its location on denaturing two-dimensional gels determined. A co-migrating series of spots was found within the protein pattern of both the standard type and the tyrosinase positive albino, sal. The same pattern of spots was also observed for c and ca with no apparent change in either the pI or the molecular weight. Transmembrane blots also showed spots that reacted with anti-tyrosinase serum in all four genotypes and that migrated to the same location as that of standard tyrosinase. It is proposed that both c and ca are CRM+ mutants which produce tyrosinase-like molecules that are inactive due to a change that is electrophoretically and antigenically "silent".     

DNA based cladograms augment the discovery of a new Ips species from China (Coleoptera: Curculionidae: Scolytinae)

The implementation of DNA in taxonomic study is in its infancy because the association of the amount and type of nucleotide change with species boundaries has not been fully examined for most taxa. Mitochondrial cytochrome c oxidase I (COI) nucleotide data is currently the most popular molecular marker for delimiting species boundaries and a standard pair‐wise nucleotide divergence between groups of individuals has been suggested for the recognition of new species. It is unlikely that such a standard would be applicable across animal species, but the association of the amount and type of nucleotide change with species boundaries could help with the establishment of a taxon‐specific DNA taxonomy. This study utilizes DNA data from nuclear and mitochondrial genes to improve the taxonomy of an important forest beetle pest, Ips. Amount and type of nucleotide difference are associated with monophyletic species based on a cladistic analysis of these data. As a result, a new species from China is described for a clade of beetles whose nucleotide differences exceeded the amount of evolutionary change observed within currently recognized species. The COI data are analyzed independently with an expanded taxon data set, including pair‐wise nucleotide differences between recognized sister species. The wide range of average intraspecific pair‐wise nucleotide difference (0–10.0%) suggests limitations to the application of a standard percent nucleotide difference as a means to identify species boundaries. At most, average COI nucleotide intraspecific difference provides an informal guide to identify potential clades that may warrant further systematic investigation. © The Willi Hennig Society 2007.     

No accident: genetic codes freeze in error-correcting patterns of the standard genetic code

The standard genetic code poses a challenge in understanding the evolution of information processing at a fundamental level of biological organization. Genetic codes are generally coadapted with, or 'frozen' by, the protein-coding genes that they translate, and so cannot easily change by natural selection. Yet the standard code has a significantly non-random pattern that corrects common errors in the transmission of information in protein-coding genes. Because of the freezing effect and for other reasons, this pattern has been proposed not to be due to selection but rather to be incidental to other evolutionary forces or even entirely accidental. We present results from a deterministic population genetic model of code-message coevolution. We explicitly represent the freezing effect of genes on genetic codes and the perturbative effect of changes in genetic codes on genes. We incorporate characteristic patterns of mutation and translational error, namely, transition bias and positional asymmetry, respectively. Repeated selection over small successive changes produces genetic codes that are substantially, but not optimally, error correcting. In particular, our model reproduces the error-correcting patterns of the standard genetic code. Aspects of our model and results may be applicable to the general problem of adaptation to error in other natural information-processing systems.     

Grazing buffers the effect of climate change on the species diversity of seedlings in an alpine meadow on the Tibetan Plateau

Climate change predominated by warming over the past decades has affected plant biodiversity, distribution, and ecosystem functioning in alpine grasslands. Yet, little is known about the interactive effect of climate change and grazing on biodiversity and ecosystem functioning. Here, we conducted a vegetation translocation experiment (ten soil‐vegetation blocks were translocated from high‐altitudinal site 3,245 m to low‐altitudinal site 3,045 m) combined with grazing treatment in an alpine meadow on the Tibetan Plateau. The results showed that (a) translocation induced effect of climate change from harsh, high‐altitudinal site to benign, low‐altitudinal site significantly promoted species richness, and density of asexual and sexual seedling, with an increase in the proportion of asexual recruitment to sexual recruitment; (b) grazing decreased the proportion of asexual seedling to sexual recruitment within community, led to a shift in the dominant plant functional groups from graminoids and legumes to forbs; and (c) grazing partly offset the increased species richness of seedling, but not seedling density, induced by climate change. These findings suggest that moderate grazing may buffer the effect of climate change on the plant community composition, and thus, functional role in alpine meadows. Further understanding the influence of climate change on grassland ecosystems needs to consider the non‐additive effect of grazing and climate change to sustainability of grassland services.     

Modification of the free sulphydryl groups of bovine serum albumin to probe conformational transitions in the neutral region

The free SH group in bovine serum albumin has been modified by covalent coupling with 2-chloromercuri-4-nitrophenol and 2-chloromercuri-2,4-dinitrophenol. The ionization of the phenolic OH group of the former label when bound to albumin can be followed spectrophotometrically. The pK of this group was influenced by the presence of Ca²⁺. This is not a direct effect but proceeds via an effect of Ca²⁺ on the protein conformation. Similar results were obtained by following the c.d. signal of this label. This conformational change seems to be different from the one which can be detected by measuring the induced c.d. of a non-covalently bound ligand like diazepam.     

幽门螺旋杆菌ATCC 43504感染BALB/c小鼠动物胃炎模型的建立及分析

利用幽门螺旋杆菌标准菌株建立稳定可靠的幽门螺旋杆菌(Helicobacter pylori,Hp)感染小鼠胃炎模型对Hp疫苗研制、Hp致病机制的研究及抗Hp药物的筛选具有重要意义。通过灌胃国际标准菌株幽门螺旋杆菌Hp ATCC 43504,构建了BALB/c小鼠动物胃炎模型。利用小鼠胃部Hp尿素酶活性检测、Hp的定量培养、PCR检测、组织病理学等多种方法鉴定BALB/c小鼠动物胃炎模型。通过Hp诊断试剂盒检测,造模组小鼠的胃组织能使Hp尿素酶试剂变色,呈现玫瑰红色,而健康小鼠的胃组织不能使Hp尿素酶试剂变色,依旧呈现黄色;通过小鼠胃组织匀浆液培养Hp,造模组小鼠的胃组织匀浆液均可在BHI血平板长出Hp菌落,而对照组小鼠的胃组织匀浆液不能培养出Hp菌落;利用PCR对造模组和对照组BALB/c小鼠的胃组织进行Hp检测,造模组小鼠胃组织可扩增出150 bp的DNA产物,而对照组小鼠胃组织无扩增产物;通过HE染色法观察小鼠胃部病理变化和炎症情况,与健康BALB/c小鼠比较,造模组小鼠胃粘膜和粘膜下层有大量白细胞浸润,胃部炎症明显。利用国际标准菌株Hp ATCC 43504菌株成功构建了BALB/c小鼠胃炎模型,为评价防治Hp感染药物的效果奠定了实验基础。     

Studies on the heme environment of horse heart ferric cytochrome c. Azide and imidazole complexes of ferric cytochrome c.

Horse heart ferric cytochrome c was investigated by the following three methods: (I) Light absorption spectrophotometry at 23 degrees C and 77 degrees K; (II) Electron paramagnetic resonance (EPR) spectroscopy at 20 degrees K; (III) Precise equilibrium measurements of ferric cytochrome c with azide and imidazole between 14.43 and 30.90 degrees C. I and II have demonstrated that: (1) Ferric cytochrome c azide and imidazole complexes were in the purely low spin state between 20 degrees K and 23 degrees C; (2) The energy for the three t2g orbitals calculated in one hole formalism shows that azide or imidazole bind to the heme iron in a similar manner to met-hemoglobin azide or imidazole complexes, respectively. III has demonstrated that: (1) The change of standard enthalpy and that of standard entropy were -2.3 kcal/mol and -1.6 cal/mol per degree for the azide complex formation, and -1.4 kcal/mol and 2.9 cal/mol per degree for the imidazole complex formation. (2) A linear relationship between the change of entropy and that of enthalpy was observed for the above data for the cyanide complex formation. The complex formation of ferric cytochrome c was discussed based on the results of X-ray crystallographic studies compared with hemoglobin and myoglobin.     

Is the SF-36 a valid measure of change in population health? Results from the Whitehall II Study.

OBJECTIVE: To measure within-person change in scores on the short form general health survey (SF-36) by age, sex, employment grade, and disease status. DESIGN: Longitudinal study with a mean of 36 months (range 23-59 months) follow up, with screening examination and questionnaire to detect physical and psychiatric morbidity. SETTING: 20 civil service departments originally located in London. PARTICIPANTS: 5070 male and 2197 female office based civil servants aged 39-63 years. MAIN OUTCOME MEASURES: Change in the eight scales of the SF-36 (adjusted for baseline score and length of follow up) and effect sizes (adjusted change standard deviation of differences). RESULTS: Within-person declines (worsening health) with age were greater than estimated by cross sectional data alone. General mental health showed greater declines among younger participants (P for linear trend < 0.001). Employment grade was inversely related to change; lower grades had greater deteriorations than higher grades (P < 0.001 for each scale in men; P < 0.05 for each scale in women except general health perceptions and role limitations due to physical problems). The greatest declines were seen among participants with disease at baseline, with the effects of physical and psychiatric morbidity being additive. Effect sizes ranged from 0.20 to 0.65 in participants with both physical and psychiatric morbidity. CONCLUSIONS: Health functioning, as measured by the SF-36, changed in hypothesised directions with age, employment grade, and disease status. These changes occurred within a short follow up period, in an occupational, high functioning cohort which has not been the subject of intervention, suggesting that the SF-36 is sensitive to changes in health in general populations.     

The effects of pressure on yeast cytochrome c peroxidase

The effects of pressure on cytochrome c peroxidase [CcP(FeIII)], its cyano derivative (CcP X CN) and its enzyme-substrate complex (ES) have been studied. The effects of pressure on the binding of the substrate analog porphyrin cytochrome c (porphyrin c) to CcP X CN and ES have also been studied. High pressure causes CcP(FeIII) to undergo a high-spin to low-spin transition but has no detectable effect on either CcP X CN, which is already low spin, or on ES. The low-spin CcP(FeIII) structure at pressure is similar to the low-spin form at low temperature and the low-spin form of horseradish peroxidase at high pressure. delta V degree associated with the spin equilibrium is about 30 ml/mol and is independent of temperature. delta G degree is small, 4.7 kJ/mol at 0 degree C, while delta H degree is 14.2 kJ/mol at 1 bar (100 kPa). Pressure has no detectable effect on the binding equilibria of mixtures of CcP X CN plus porphyrin c or ES plus porphyrin c. This indicates that the interaction of CcP and porphyrin c results in little or no volume change; the same is true in the case of cytochrome c oxidase and porphyrin c.     

Assessing the effect of poisoning programs on the density of non-target fauna: Design and interpretation

To establish whether poisoning programs affect non-target density, the null hypothesis that density does not decline on poisoned sites needs to be tested. However, where no statistically significant reduction in density is found, there is some probability that a biologically significant reduction has been overlooked. The probability that such an error has occurred (a Type 2 error) depends on the effect poisoning has on non-target density, the precision with which the reduction is assessed, and the number of poisoning operations sampled. Prospective power analysis can identify minimum sample sizes that reduce the probability of a Type 2 error to acceptable levels. Equivalence tests require a priori identification of the minimum change in non-target density that can be safely overlooked and the acceptable probability of doing so. As such, they explicitly link the statistical and biological significance of non-target poisoning assessments. We illustrate these principles using an experimental assessment of the effect rabbit poisoning has on the density of large kangaroo populations in Australia. A rule-of-thumb guide was used to estimate appropriate levels of power (0.85) and reductions in kangaroo density (r = -0.12) for the assessment, and a pilot study conducted to estimate the between-sample standard deviation for estimates of change in kangaroo density(s = 0.089). Prospective power analysis based on these estimates indicated that 6 poisoning programs would provide a robust assessment of the effect of poisoning on kangaroos. However, because the between-sample standard deviation was underestimated, a subsequent assessment based on 6 samples had insufficient power to usefully estimate the effect poisoning had on kangaroos. Retrospective power analysis indicated that at 0.85 power, reductions in kangaroo density as high as r=—2.2 may have been overlooked. Using the between-sample standard deviation from this assessment, changes in kangaroo density would have to be estimated for 17-19 poisoning programs if a subsequent experiment was to achieve a biologically as well as statistically robust result.     

Importance of phosphatidylethanolamine for the interaction of apocytochrome c with model membranes containing phosphatidylserine

The effect of phosphatidylethanolamine (PE) on the binding of apocytochrome c to model membranes was examined. When 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) of the standard vesicles composed of 80% of this lipid and 20% of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoserine (POPS) was gradually replaced with upward of 50% of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (POPE), the binding increased appreciably. Ca(2+), causing the phase separation of PS, also brought about increased binding of apocytochrome c in the PC/PS system, underlining the importance of PS properties in membranes for the protein binding. The resonance energy transfer between Trp-59 in apocytochrome c and pyrene-PS incorporated into bilayers showed that the replacement of PC with PE increased the extent of apocytochrome c penetration into membranes by a PE concentration-dependent manner. However, in the absence of PS, PE had no apparent effect on these functions of apocytochrome c, suggesting that PE-induced change(s) of acidic membrane properties is important to the association of apocytochrome c with vesicles. From the observations that the excimer to monomer fluorescence ratio of pyrene-PS increased and the fluorescence of NBD-PS was quenched with increasing concentration of PE, it was deduced that PE caused PS-enriched domains in PC/PE/PS membranes. The colocalization of pyrene-PS with BODIPY-PS by PE further supported the possibility. We suggest that PE-induced formation of PS-enriched domains acts as binding sites for apocytochrome c in membranes.     

Rates of evolution on the time scale of the evolutionary process

A generational time scale, involving change from one generation to the next, is the time scale of evolution by natural selection. Microevolutionary and macroevolutionary patterns reflect this process on longer time scales. Rates of evolution are most efficiently expressed in haldane units, H, in standard deviations per generation, indexed by the log of the time interval. Rates from replicated selection experiments and simulations have rate-interval [RI] and log rate-log interval [LRI] scaling relations enabling directional, stationary, and random time series to be distinguished. Empirical microevolutionary and macroevolutionary data exhibit stationary scaling, but point to generational rates of evolution (H ₀) conservatively on the order of 0.2 standard deviations per generation on the time scale of the evolutionary process. This paradox of long-term stationary scaling and short-term high rates of change can be explained by considering the shape of an heuristic time-form evolutionary lattice. Cenozoic mammals occupy a lattice that is about four orders of magnitude longer in time than it has ever been wide in form. The evolutionary process is dynamic but operates within relatively narrow morphological constraints compared to the time available for change.     

Solute inaccessible aqueous volume changes during opening of the potassium channel of the squid giant axon.

We have applied solutions with varying osmotic pressures symmetrically to the inside and outside of perfused, TTX-treated, giant axons. The potassium conductance G decreased with increasing osmotic stress, but there was no effect on either the shape or the position of the voltage-current curve. One must distinguish three possible actions of the osmotic agent: osmotic stress, channel blocking, and lowered solution conductivity. To do so, we compared results obtained working with pairs of internal and external solutions of either (a) equal osmotic stress, (b) equal conductivity, or (c) the same blocking agent. There was the same change in G irrespective of the type of stressing species (sorbitol or sucrose); this provides some evidence against a blocking mechanism. The conductivity of the external solution had a small effect on K currents; internal solution conductivity had none. A change in series resistance of the Schwann cell layer could account for the small effect of external solution conductivity. The primary cause of G depression appears, then, to be the applied osmotic stress. Using this result, we have developed models in which the channel has a transition between closed states under voltage control but osmotically insensitive and a closed/open step that is voltage-independent but osmotically sensitive. We have assumed that the conductance of this open state does not change with osmotic stress. In this way, we estimate that an additional 1,350 +/- 200 A3 or 40-50 molecules of solute-inaccessible water appear to associate with the average delayed rectifier potassium channel of the squid axon when it opens.     

Standard apparent reduction potentials for biochemical half reactions as a function of pH and ionic strength

Standard apparent reduction potentials are important because they give a more global view of the driving forces for redox reactions than do the standard transformed Gibbs energies of formation of the reactants. This paper emphasizes the effects of pH on biochemical half reactions in the range pH 5 to 9, but it also shows the effect of ionic strength. These effects can be calculated if the pKs of acid groups in the reactants are known in the range pH 4 to 10. Raising the pH decreases the standard apparent reduction potentials of half reactions when it has an effect, and the slope is proportional to minus one times the ratio of the change in binding of hydrogen ions in the half reaction to the number of electrons transferred. These effects are discussed for 19 biochemical reactions. This effect is most striking for the nitrogenase reaction, where the apparent equilibrium constant is proportional to 10(-10 pH) and is unfavorable for nitrogen fixation above pH 8.     

Significance of ATP-sensitive K(+)-channel in the mechanism of antiarrhythmic and cardioprotective effect of adaptation to intermittent hypobaric hypoxia

Adult male Wistar rats were exposed to intermittent hypobaric hypoxia (5000 m, 6 h/day, 6 weeks). It has been found that such mode of adaptation increased cardiac tolerance to arrhythmogenic action of a 45-min coronary artery occlusion but did not change an infarct size/area at risk (IS/AAR) ratio. In a separate series, rats were exposed to stronger intermittent hypobaric hypoxia (7000 m, 8 h/day, 6 weeks) and subjected to 20-min coronary artery occlusion and 3-h reperfusion on the day after the last hypoxic exposure. It has been established that in this case adaptation decreased the IS/AAR ratio, increased cardiac tolerance to arrhythmogenic action of reperfusion but had no effect on the incidence of ventricular arrhythmias occurred during ischemic period. We found that cardioprotective and antiarrhythmic effect of adaptation to the "altitudes" of 7000 m and antiarrhythmic effect of adaptation to the "altitude" of 5000 m is mediated via K(ATP)-channel activation.     

Interaction between the cyclic AMP receptor protein and DNA. Conformational studies

The binding of the cyclic adenosine 3',5' monophosphate receptor protein (CRP or CAP) of Escherichia coli to non-specific DNA and to a specific lac recognition sequence has been investigated by circular dichroism (c.d.) spectroscopy. The effect of cAMP and cGMP on the co-operative non-specific binding was also studied. For the non-specific binding in the absence of cAMP a c.d. change (decrease of the intensity of the positive band with a shift of its maximum to longer wavelength) indicates that the DNA undergoes a conformational change upon CRP binding. This change might reflect the formation of the solenoidal coil previously observed by electron microscopy. The amplitude of the c.d. change increases linearly with the degree of saturation of the DNA and does not depend on the size of the clusters of CRP bound. From the variation of the c.d. effect as a function of the ionic strength, the product K omega (K, the intrinsic binding constant and omega, the co-operativity parameter) could be determined. The number of ion pairs involved in complex formation between CRP and DNA was found to be six to seven. Experiments performed with several DNAs, including the alternating polymers poly[d(A-T)] and poly[d(G-C)], demonstrated that the conformational change does not depend on the DNA sequence. However, in the presence of cAMP the c.d. spectrum of the DNA shows only a small variation upon binding CRP. In contrast, in the presence of cGMP the conformational change of the DNA is similar to that observed when non-liganded CRP binds. For the specific lac operon binding, the c.d. change is different from those observed for non-specific binding in the presence or absence of cAMP. These results emphasize the high variability of the DNA structure upon binding the same protein.     

Six minutes to promote change: People,not facts,alter students' perceptions on climate change

Anthropogenic climate change threatens the structure and function of ecosystems throughout the globe, but many people are still skeptical of its existence. Traditional “knowledge deficit model” thinking has suggested that providing the public with more facts about climate change will assuage skepticism. However, presenting evidence contrary to prior beliefs can have the opposite effect and result in a strengthening of previously held beliefs, a phenomenon known as biased assimilation or a backfire effect. Given this, strategies for effectively communicating about socioscientific issues that are politically controversial need to be thoroughly investigated. We randomly assigned 184 undergraduates from an environmental science class to one of three experimental conditions in which we exposed them to short videos that employed different messaging strategies: (a) an engaging science lecture, (b) consensus messaging, and (c) elite cues. We measured changes in student perceptions of climate change across five constructs (content knowledge, acceptance of scientific consensus, perceived risk, support for action, and climate identity) before and after viewing videos. Consensus messaging outperformed the other two conditions in increasing student acceptance of the scientific consensus, perceived risk of climate change, and climate identity, suggesting this may be an effective strategy for communicating the gravity of anthropogenic climate change. Elite cues outperformed the engaging science lecture condition in increasing student support for action on climate, with politically conservative students driving this relationship, suggesting that the messenger is more important than the message if changing opinions about the necessity of action on climate change is the desired outcome. Relative to the other conditions, the engaging science lecture did not support change in students'' perceptions on climate, but appealing to student respect for authority produced positive results. Notably, we observed no decline in students'' acceptance of climate science, indicating that none of the conditions induced a backfire effect.     

Temperature, stability, and the hydrophobic interaction

Changes in free energy are normally used to track the effect of temperature on the stability of proteins and hydrophobic interactions. Use of this procedure on the aqueous solubility of hydrocarbons, a standard representation of the hydrophobic effect, leads to the conclusion that the hydrophobic effect increases in strength as the temperature is raised to approximately 140 degrees C. Acceptance of this interpretation leads to a number of far-reaching conclusions that are at variance with the original conception of the hydrophobic effect and add considerably to the complexity of interpretation. There are two legitimate thermodynamic functions that can be used to look at stability as a function of temperature: the standard Gibbs free energy change, deltaG degrees, and deltaG degrees/T. The latter is proportional to the log of the equilibrium constant and is sometimes called the Massieu-Planck function. Arguments are presented for using deltaG degrees/T rather than deltaG degrees for variations in stability with temperature. This makes a considerable difference in the interpretation of the hydrophobic interaction, but makes little change in the stability profile of proteins. Protein unfolding and the aqueous solubility of benzene are given as examples. The contrast between protein unfolding and the hydration of nonpolar molecules provides a rough estimate of the contribution of other factors that stabilize and destabilize protein structure.