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M.G. Munowitz C.M. Dobson R.G. Griffin S.C. Harrison 《Journal of molecular biology》1980,141(3):327-333
The motional state of RNA in tomato bushy stunt virus, both in the crystalline state and in solution, has been investigated using 31P nuclear magnetic resonance methods. It has been found that the RNA is highly immobile in the native virus and it is suggested that the lack of a high-resolution X-ray diffraction pattern for either the RNA or the N-terminal regions of the protein coat molecules (Harrison et al., 1978) is due to static disorder in the crystals. Dynamic disorder has been detected in the virus after treatment with EDTA, which causes a structural change and an increase in particle size. 相似文献
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A virus transmissible toChenopodium quinoa was isolated from leaves of sugar beet showing large chlorotic ring spots and line pattern. The virus was serologically unrelated
to tobacco necrosis virus and tomato black ring virus or to its beet ringspot strain either. A positive result was obtained
with antiserum against tomato bushy stunt virus. Reactions of herbaceous indicators and properties of the virus in crude sap
were in accordance with the serological diagnosis. A survey of natural hosts of tomato bushy stunt virus demonstrated recently
by the authors is given. 相似文献
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Summary Peculiar chloroplast alterations were found in mesophyll cells ofDatura stramonium systemically infected with tomato bushy stunt virus. These alterations lead to complete rearrangement of the thylakoids. 相似文献
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Characterization of the RNA-binding domains in the replicase proteins of tomato bushy stunt virus
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Tomato bushy stunt virus (TBSV), a tombusvirus with a nonsegmented, plus-stranded RNA genome, codes for two essential replicase proteins. The sequence of one of the replicase proteins, namely p33, overlaps with the N-terminal domain of p92, which contains the signature motifs of RNA-dependent RNA polymerases (RdRps) in its nonoverlapping C-terminal portion. In this work, we demonstrate that both replicase proteins bind to RNA in vitro based on gel mobility shift and surface plasmon resonance measurements. We also show evidence that the binding of p33 to single-stranded RNA (ssRNA) is stronger than binding to double-stranded RNA (dsRNA), ssDNA, or dsDNA in vitro. Competition experiments with ssRNA revealed that p33 binds to a TBSV-derived sequence with higher affinity than to other nonviral ssRNA sequences. Additional studies revealed that p33 could bind to RNA in a cooperative manner. Using deletion derivatives of the Escherichia coli-expressed recombinant proteins in gel mobility shift and Northwestern assays, we demonstrate that p33 and the overlapping domain of p92, based on its sequence identity with p33, contain an arginine- and proline-rich RNA-binding motif (termed RPR, which has the sequence RPRRRP). This motif is highly conserved among tombusviruses and related carmoviruses, and it is similar to the arginine-rich motif present in the Tat trans-activator protein of human immunodeficiency virus type 1. We also find that the nonoverlapping C-terminal domain of p92 contains additional RNA-binding regions. Interestingly, the location of one of the RNA-binding domains in p92 is similar to the RNA-binding domain of the NS5B RdRp protein of hepatitis C virus. 相似文献
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Calcium binding sites in tomato bushy stunt virus visualized by Laue crystallography 总被引:1,自引:0,他引:1
J W Campbell I J Clifton T J Greenhough J Hajdu S C Harrison R C Liddington A K Shrive 《Journal of molecular biology》1990,214(3):627-632
We have collected Laue diffraction data from crystals of tomato bushy stunt virus using the full white X-ray spectrum from the wiggler magnet of the Synchrotron Radiation Source at Daresbury, U.K. A single 24 second exposure of a crystal soaked in EDTA yielded a data set that was 90% complete between 6 and 3.5 A resolution. A large proportion of the data could be measured using an overlap deconvolution routine to separate spatially overlapping reflections in the dense Laue photograph. Reflections with I greater than 2 sigma I (40% of the data set) were subjected to wavelength normalization. A difference Fourier map between these reflections and a monochromatic native set showed, after icosahedral averaging, the three pairs of Ca2+ binding sites related by quasi-symmetry and the movement of a liganding loop in the protein at the A/C subunit interface. The extent and quality of the data obtained from a single Laue photograph of this virus were thus sufficient to detect clearly such small structural alterations. In a second experiment, a Laue photograph was taken from a crystal that was soaked first in EDTA and then in GdCl3. A difference Fourier map between this Laue data set and the Laue data set from the EDTA-soaked crystal showed clearly the Gd3+ sites in the capsid, demonstrating that the Laue technique is a reliable and efficient means for data collection with virus crystals. 相似文献
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The structure of tomato bushy stunt virus has been investigated by neutron small-angle scattering. Data were collected in aqueous solutions containing various amounts of D2O, and the radial distribution of both protein and RNA could be computed. The main feature of that distribution is the clustering of protein into two concentric shells separated by about 30 Å, where the density is so low that the polypeptide chain must be extended. Most of the RNA is located between these two protein shells. The implications of that structure for protein-RNA interactions are discussed. 相似文献
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Aramayo R Mérigoux C Larquet E Bron P Pérez J Dumas C Vachette P Boisset N 《Biochimica et biophysica acta》2005,1724(3):345-354
Time-resolved small-angle X-ray and neutron scattering (SAXS and SANS) in solution were used to study the swelling reaction of TBSV upon chelation of its constituent calcium at mildly basic pH. SAXS intensities comprise contribution from the protein capsid and the RNA moiety, while neutron scattering, recorded in 72% D2O, is essentially due to the protein capsid. Cryo-electron micrographs of compact and swollen virus were used to produce 3D reconstructions of the initial and final conformations of the virus at a resolution of 13 A and 19 A, respectively. While compact particles appear to be very homogeneous in size, solutions of swollen particles exhibit some size heterogeneity. A procedure has been developed to compute the SAXS pattern from the 3D reconstruction for comparison with experimental data. Cryo-electron microscopy thereby provides an invaluable starting (and ending) point for the analysis of the time-resolved swelling process using the scattering data. 相似文献
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Patrick Argos Tomitake Tsukihara Michael G. Rossmann 《Journal of molecular evolution》1980,15(3):169-179
Summary Significant structural equivalence has been found among the polypeptide folds of the two tomato bushy stunt virus (TBSV) subunit domains and concanavalin A. This suggests gene duplication in the TBSV coat protein and leads to speculation on common functional properties of concanavalin A and viral coat proteins.Non-standard abbreviations TBSV
tomato bushy stunt virus
- SBMV
southern bean mosaic virus 相似文献
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The 3' untranslated regions (UTRs) of positive-strand RNA viruses often form complex structures that facilitate various viral processes. We have examined the RNA conformation of the 352 nucleotide (nt) long 3' UTR of the Tomato bushy stunt virus (TBSV) genome with the goal of defining both local and global structures that are important for virus viability. Gel mobility analyses of a 3'-terminal 81 nt segment of the 3' UTR revealed that it is able to form a compact RNA domain (or closed conformation) that is stabilized by a previously proposed tertiary interaction. RNA-RNA gel shift assays were used to provide the first physical evidence for the formation of this tertiary interaction and revealed that it represents the dominant or "default" structure in the TBSV genome. Further analysis showed that the tertiary interaction involves five base pairs, each of which contributes differently to overall complex stability. Just upstream from the 3'-terminal domain, a long-distance RNA-RNA interaction involving 3' UTR sequences was found to be required for efficient viral RNA accumulation in vivo and to also contribute to the formation of the 3'-terminal domain in vitro. Collectively, these results provide a comprehensive overview of the conformational and functional organization of the 3' UTR of the TBSV genome. 相似文献
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Protein interfaces and intersubunit bonding. The case of tomato bushy stunt virus. 总被引:6,自引:1,他引:5
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S C Harrison 《Biophysical journal》1980,32(1):139-153
An atomic model of the subunit of tomato bushy stunt virus (TBSV) has been constructed to fit an electron density map at 2.9 A resolution. Subunit interfaces show networks of polar residues forming H-bonds and salt bridges. The way in which alternative specific bonding geometries are built into a contact are described. 相似文献
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The fruit pitting symptoms on cherries, plums and prunes were investigated from the standpoint of their etiology. Tomato bushy stunt virus (TBSV) was isolated from pitted fruits of these plants and from their leaves and identified by means of biological and serological methods. Both isolates reacted with antisera againstPetunia and artichoke strain of this virus. In addition, the etiology of pseudopox disease of plum and that of cherry detrimental canker is discussed. 相似文献
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