Mitochondrial D-loop nucleotide diversity in Astyanax (Osteichthyes, Characidae) from the upper Paraná and upper Paraguay River basins

The morphological discrimination between the species Astyanax altiparanae and A. asuncionensis of the upper Paraná River and Paraguay River basins, respectively, has always been difficult. Two D-loop haplogroups of A. altiparanae are known, one with the presence (AltoPR) or the absence (AltoPR-D) of a 32-bp block similar to that in A. asuncionensis. We examined these samples to characterize A. altiparanae and verify whether A. asuncionensis occurred in the upper Paraná River prior to the submergence of the Sete Quedas Falls when Itaipu reservoir was impounded. D-loop sequences were analyzed in A. altiparanae of the upper Paraná and Igua?u Rivers and those of A. asuncionensis of the upper Paraguay River. The haplogroup AltoPR was found at all sites of the upper Paraná and Igua?u Rivers, whereas AltoPR-D occurred in the Itaipu reservoir, floodplain and in the Tietê and Grande Rivers. Two haplogroups of A. asuncionensis were identified and both did not have the 32-bp block. However, AltoPR and AltoPR-D differed from one another in 5.1% of their bases and between 8.9 and 12.5% with regard to the haplogroups of the upper Paraguay basin. Further, AltoPR-D occurred in the Grande River upstream the Marimbondo Falls and other older reservoirs than Itaipu. The results reject the hypothesis of the establishment of A. asuncionensis and suggest that the haplogroup AltoPR-D existed in the upper Paraná River before the impounding of the Itaipu reservoir. Moreover, morphological similarity and high genetic variation within the altiparanae/asuncionensis group suggest the existence of a cryptic species complex.     

Vegetation types of the upper Madeira River in Rondônia,Brazil

We characterize the vegetation types of the upper basin of the Madeira River in the Brazilan state of Rondônia, a biodiverse region with elevated rates of habitat loss. Vegetation and environmental parameters were recorded from 37 observation points distributed along and near a 160 km stretch of the Madeira River and representing the range of regional environments. Analysis of structure and floristic variables, as well as associated edaphic attributes and water table fluctuation, permitted recognition of five main vegetation types and seven subtypes. Open Ombrophilous Forest was the most frequently encountered vegetation type and occurred on well-drained, nutrient-poor soils, whereas Dense Ombrophilous Forest was seldom recorded. Alluvial Ombrophilous Forests (várzea) were found along a narrow strip of land along the banks of the Madeira River on the most fertile soils in the study area. Semideciduous Forests were found on small areas of rocky outcrops with shallow soils and reduced water availability during the dry season. Campinaranas, which range from open savanna physiognomies to closed canopy forests, were found to be a key environment in the lowlands south of the Madeira River on silty hydromorphic soils, where they harbor a peculiar flora tolerant of flooding during the rainy season. Our classification of the main vegetation types in the upper Madeira River illuminates a high degree of floristic and environmental heterogeneity in a highly threatened region. Our results will be useful for designing conservation strategies aimed at protecting the full range of floristic diversity present in the region.     

Two new species of Euptychia Hübner, 1818 from the upper Amazon basin (Lepidoptera,Nymphalidae, Satyrinae)

Two new species of Euptychia Hübner, 1818 are described from the upper Amazon basin: Euptychia attenboroughi Neild, Nakahara, Fratello & Le Crom, sp. n. (type locality: Amazonas, Venezuela), and Euptychia sophiae Zacca, Nakahara, Dolibaina & Dias, sp. n. (type locality: Acre, Brazil). Their unusual facies prompted molecular and phylogenetic analyses of one of the species resulting in support for their classification in monophyletic Euptychia. Diagnostic characters for the two species are presented based on wing morphology, wing pattern, presence of androconial patches on the hindwing, and genitalia. Our results indicate that the projection of the tegumen above the uncus, previously considered a synapomorphy for Euptychia, is not shared by all species in the genus. The adults and their genitalia are documented, and distribution data and a map are provided.     

Farming,fishing, and fire in the history of the upper Río Negro region of Venezuela

Studies of Río Negro subsistence farming and fishing activities are used to estimate the human carrying capacity for the region and the likely pattern of human land-use during prehistory. Ceramic evidence suggests human presence in the region more than 3000 years ago. Traditional farming is labor intensive and relatively unproductive. Nevertheless, farmers achieve an energy return of 15.21, and produce 2600 kcal per work hour. Fish are the major protein source, but fish catch per unit of effort and fish yield per hectare of floodplain are very low; fishermen are probably exploiting local fish resources very close to their limit. The low human population density would suggest that the Río Negro forest has been relatively undisturbed. Nevertheless, charcoal is widespread and abundant in forest soils. This charcoal is probably from anthropogenic or natural wildfires. These results suggest a much more complex history for Amazonia than previously thought.K. Clark is a free-lance biologist residing in Lima, Peru     

Community size structure of zooplanktonic assemblages in three lakes on the upper River Paraná floodplain, PR-MS, Brazil

Abundance and body size of zooplanktonic organisms, testate amoebae, rotifers, cladocerans and copepods from the littoral and pelagic regions of three lakes were analyzed in February and August 2000. The lakes belong to three different river systems (Baía, Ivinhema and Paraná rivers) of the upper River Paraná floodplain. It was expected that average body size was different in space (regions of the lake and limnological characteristics) and time (summer and winter) because the variation of depth, pH, oxygen dissolved, chlorophyll-a and water temperature of each lake. Zooplankton community was represented by 119 species. Sorensen's coefficient showed that the three communities were similar. Larger organisms were found in the lakes' pelagic region, and seasonally larger individuals were registered in the winter and smaller individuals in the summer. The relationship between body size and density was slight, positively significant. The body size frequency distribution was bi-modal. ANOVA results showed a significant influence of the interaction of the littoral and pelagic regions, lakes, and seasons in the body size of zooplankton organisms. Spatial and temporal changes of the community size structure of zooplanktonic assemblages were related to the food resource (microbial-loop or herbivore chain), species habitat preference and life strategies (growth and reproduction).     

Pollen-analytical reconstruction of vegetation in the upper regions of the Orlické hory mountains,Czechoslovakia

The paper presents the results of pollen analyses of samples collected from two peat localities in the Orlické hory mountains in Czechoslovakia. Appended pollen diagrams depict the vegetation and its changes in the Older and Younger Subatlantic period. The paper suggests the probable proportional representation of the principal woody plants in the area and, on the basis of pollen analyses, reconstructs the forest covers of the Orlické hory, especially of their upper regions. The author has foundFagus to have predominated among woody plants in the area (even in the upper regions) in the Older Subatlantic. From the 16th or 17th century onward it was gradually replaced byPicea. This change was primarily due to human activity (cutting down of the beeches). The composition of foot-hill forests, as far as it is reflected in the diagrams, is discussed. The pollen diagrams also testify to agricultural activity by man in the wide surroundings of the Orlické hory.     

A checklist of Lecythidaceae in the upper Madeira River,Rondônia,Brazil with comments on diversity and conservation

The Lecythidaceae or Brazil Nut family are ubiquitous in non-flooded lowland forests of the Amazon, where they are indicative of well-preserved or little-disturbed habitats. A recent checklist of the Brazilian flora reported 10 genera and 119 species for that country, of which 104 are found in the Amazon region. However, the botanical knowledge in many regions of the country remains far from complete. This study aimed to analyze the diversity of Lecythidaceae in the upper Madeira River region in Rondônia, an area where botanical data is scarce. Lecythidaceae collections deposited in the CEN, INPA and RON herbaria were examined, and four field expeditions in the study area were carried out. For that region, we recorded 37 species of Lecythidaceae belonging to 7 genera: Eschweilera (21 species), Couratari (6), Cariniana (3), Gustavia (3), Allantoma (2), Bertholletia (1) and Lecythis (1). Among these species, five are listed as threatened in the IUCN Red List. The total number of species found in the upper Madeira River of Rondônia alone is higher than the 28 species reported to date for the entire state of Rondônia in the Brazilian Flora Checklist (Smith et al., 2015), and adds 13 new records of Lecythidaceae for the state. Considering that this study is restricted to the northern part of the state, our results suggest that the number of Lecythidaceae species in Rondônia is severely underestimated. Our findings highlight the need for more intensive floristic studies in the Amazon region, which should target areas that are botanically unexplored but have high biodiversity potential. Such studies will provide valuable information to support both taxonomic studies and species conservation assessments.     

Biostratigraphy and stage boundaries of the upper Cretaceous–early Paleogene successions in southern Galala area,North-Eastern Desert,Egypt

The foraminiferal contents of three surface sections [Gebel Tarboul, Wadi Tarfa (WT) and Bir Dakhl (BD) sections] in southern Galala area, North-Eastern Desert, Egypt, have been studied in detail and used in biostratigraphy and chronostratigraphy of the upper Cretaceous–Paleogene successions. Sixty-nine planktonic foraminiferal species belonging to 23 genera have yielded 17 biozones. They are given in ascending order: Globotruncana aegyptiaca Interval Zone (IZ), Gansserina gansseri IZ, Contusotruncana contusa–Racemiguembelina fructicosa IZ, Abathomphalus mayaroensis IZ, P1c, P2, P3, P3a, P3b, P4, P4a, P4b, P4c, P5, E1, E2, E3, E4 and E5. Moreover, local and widespread regional hiatus was detected in the pelagic to hemipelagic sequence during Cretaceous–Paleogene boundary in southern Galala Sub-basin. This hiatus corresponds to the Early Maastrichtian–Early Eocene in Gebel Tarboul, the interval between Late Maastrichtian–Early Paleocene throughout WT sequences and Late Maastrichtian–Late Paleocene in BD section.     

Allozyme variation in Schilbe intermedius Rüppel, 1832 (Pisces,Siluriformes) from the upper Zambezi River System

The gene products of 60 protein coding loci in Schilbe intermedius were examined by horizontal starch-gel electrophoresis. Electrophoretic analysis, using muscle and liver tissues, revealed polymorphism at 17 (28.3%) of the loci studied. The average heterozygosity (H) was calculated at 0.029 (±0.009) which is less than values obtained for other fish species. These results suggest that measures should be taken to conserve the genetic variation of this species.     

Allozyme comparison of two populations of Rineloricaria (Siluriformes, Loricariidae) from the Ivaí River, upper Paraná River basin, Brazil

Two allopatric morphotypes of the genus Rinelocaria were compared through the allozyme electrophoresis technique: one morphotype, R. pentamaculata, from the Keller River in the middle stretch of the Ivaí River basin and the other, R. aff. pentamaculata, from the São João River in the upper portion of the Ivaí River basin. The morphotype from the São João River was collected upstream from the São João waterfall, which is about 80 m deep. Twelve enzymatic systems (AAT, ADH, EST, GCDH, G3PDH, GPI, IDH, LDH, MDH, ME, PGM and SOD) were analyzed, which allowed to score 22 loci. Only lociAat-2, Est-3 and Mdh-C showed polymorphism. The two samples differed in allele frequencies at the three polymorphic loci. The average expected heterozygosity for all loci was 0.0806 ± 0.0447 in the Keller River sample. For the São João River morphotype, this value was 0.0489 ± 0.0350. Nei'' s genetic identity and distance between the two populations were respectively 0.9789 and 0.0213. Wright''s F_IS , F_IT and F_ST over all loci were estimated as 0.3121, 0.4021 and 0.1309, respectively. We consider that the two morphotypes represent species in statunascendi.     

Identification of spawning sites and natural nurseries of fishes in the upper Paraná River,Brazil

Synopsis We studied the timing of migratory fish spawning in the last dam-free stretch of the upper Paraná River and in Itaipu Reservoir. Eggs were more common in the Amambai and Ivaï Rivers, while larvae predominated in the Paraná River and in Itaipu Reservoir. Both eggs and larvae were more abundant at night. The highest abundance of eggs was in October and that of larvae in November. Migratory species predominated in the Amambai and Paraná Rivers, and non-migratory species in the Ivaï River and Itaipu Reservoir. The predominance of eggs in the upper and middle portions, and larvae in the lower, infer that there are spawning sites in the former and nurseries in the latter. The high nocturnal abundance of eggs is associated with spawning at sunset and that of larvae with feeding, avoidance of predators and nocturnal disorientation. The presence of tributaries such as the Amambai and Ivaí Rivers in the last dam-free stretch of the Paraná River is extremely important to the maintenance of regional fish diversity and fish stocks in both the Paraná River and Itaipu Reservoir.     

Molecular Diagnostics — an upper division/graduate course

We have developed a course in Molecular Diagnostics suitable as an upper division/Master’s level elective class for Biology, Microbiology, and Biochemistry majors who have already been introduced to basic genetics and molecular biology. The course provides an intensive hands-on laboratory experience in current molecular techniques for disease diagnosis coupled with lecture on major biological topics and concepts underlying disease and disease processes. Its structure and content make the course appropriate not only for students who envision careers in molecular diagnosis, but also for those aspiring to the teaching, research, or medical professions.     

Temporal fluctuations of the phytoplankton community of the Baía River, in the upper Paraná River floodplain, Mato Grosso do Sul, Brazil

Subsurface samples were taken monthly (March/1993 through February/1994) in the Baía River, a tributary of the right bank of the Paraná River (22° 43 S and 53° 17 W). We analyzed temporal changes in the phytoplankton community in relation to density, biomass, richness and species diversity, equitability, size structure, and dominance. We related these to regional climate and hydrology, and to the physical and chemical variables of the water column. We determined 119 taxa, wich were numerically dominated by the class Chlorophyceae with 37 taxa. The classes Cyanophyceae and Bacillariophyceae contributed the most abundant biomass and were responsible for the two peaks that were observed. The high water period was generally characterized by lower phytoplankton biomass, higher richness and species diversity, and higher density of nannoplanktonic species such as Monoraphidium tortile in March, and Cryptomonas brasiliensis in January. During low water, however, the highest values of phytoplankton biomass were recorded, with heterocytous cyanophytes dominating during the phase of greater stability of the water column, and filamentous diatoms during periods of mixing turbulence. The fluctuations observed indicate that the hydrosedimentological regime of the Paraná River, together with the climatological factors, constitute the main forcing functions acting on the Baía River phytoplankton.     

Schistura sexnubes, a new diminutive river loach from the upper Mekong basin,Yunnan Province,China (Teleostei：Cypriniformes：Nemacheilidae)

An ichthyofaunistic survey of Mekong tributaries in Lincang Prefecture, Yunnan Province, China yielded a new species of nemacheilid loach, herein described as Schistura sexnubes species nova. The new species is readily distinguishable from its congeners by the following combination of characters: 8+8 branched caudal fin rays, an incomplete lateral line, a dissociated caudal bar, a shallow caudal peduncle depth (7.6%-9.6% SL; respectively caudal peduncle 1.76-1.95 times longer than deep), a diminutive size of less than 50 mm SL, and no sexual dimorphism. A dorsocephalic pattern consisting of a black, forward directed V-shaped formation located between the nares, and a white, ovoid blotch on the upper operculum serves as an autapomorphy.     

Aneuploidy in upper gastro-intestinal tract cancers--a potential prognostic marker?

Chromosomal instability manifesting as aneuploidy is the most frequently observed abnormality in solid tumours. However, the role of aneuploidy as a cause or consequence of cancer remains a controversial topic. In this review, we focus on the karyotypic imbalances recorded for cancers of the upper gastro-intestinal (GI) tract, together with their associated pre-malignant lesions and the potential of aneuploidy as a clinical tool for patient management. Numeric chromosomal aberrations are common throughout gastro-oesophageal cancers and their precursor lesions. Additionally, specific chromosomal aneusomies have been identified as early changes in pre-dysplastic tissues suggesting they may be actively involved in driving tumourigenesis. As a progressive increase in the severity of aneuploidy with neoplastic progression has also been observed, it has thus been shown to be a useful prognostic indicator for patient classification as low or high-risk cases for cancer development. However, the biological basis for the aneuploidy in cancers of the upper GI tract needs to be established to understand its consequences and role during carcinogenesis, which is necessary for improving diagnostics and establishing novel targeted therapies.     

Allozyme differentiation of two populations of the genus Neoplecostomus Eigenmann & Eigenmann, 1888 (Teleostei, Loricariidae) from the upper Paraná River basin, Brazil

Allozyme electrophoresis was used to examine 12 enzymatic systems in two populations of the genus Neoplecostomus from the Paraná River basin. Samples of Neoplecostomus sp. 1 were collected in Paraitinguinha stream of the Tietê River basin, in the municipality of Salesópolis, São Paulo State, and those of Neoplecostomus sp. 2 from São Domingos stream of the Rio Grande River basin, in the municipality of Muzambinho, Minas Gerais State. The genetic variability of the two populations was estimated by Nei’s expected heterozygosity and was considered lower than average for populations of freshwater fish. The proportion of polymorphic loci was low (only 5.26% for the locus Idh). The low frequency of heterozygosity for both populations revealed a high fixation of alleles for each locus. Homozygote excess was observed in both populations. The values of Nei’s genetic identity and the presence of loci with different allele frequencies in both populations may imply that the two populations belong to different species. The genetic variability between populations was compared to other data for loricariids.     

Spatial patterns in fish distributions and structure of the ichthyocenosis in the Água Nanci stream,upper Paraná River basin,Brazil

Samples of fishes were collected quarterly at three reaches in the Água Nanci stream, upper Paraná River basin, Brazil: near the spring, in the middle course, and near the mouth. Richness and evenness of the fish fauna increased between reaches towards the river mouth showing a correlation with stream width, pH and the presence of riparian vegetation. These variations in species richness and evenness, verified through Principal Component Analysis and Pearson correlation, suggest relations to habitat complexity, especially characterized by both the degree of preservation of dense riparian vegetation and high width at the lower reaches of the stream, providing a wide variety of hiding places for fish. Abundant species showed correlations with some environmental factors, suggesting habitat preferences.