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1.
Goldstein PZ DeSalle R 《BioEssays : news and reviews in molecular, cellular and developmental biology》2011,33(2):135-147
DNA barcodes, like traditional sources of taxonomic information, are potentially powerful heuristics in the identification of described species but require mindful analytical interpretation. The role of DNA barcoding in generating hypotheses of new taxa in need of formal taxonomic treatment is discussed, and it is emphasized that the recursive process of character evaluation is both necessary and best served by understanding the empirical mechanics of the discovery process. These undertakings carry enormous ramifications not only for the translation of DNA sequence data into taxonomic information but also for our comprehension of the magnitude of species diversity and its disappearance. This paper examines the potential strengths and pitfalls of integrating DNA sequence data, specifically in the form of DNA barcodes as they are currently generated and analyzed, with taxonomic practice. 相似文献
2.
线蚓科隶属于环节动物门环带纲,迄今共记录32属650余种,是该纲的第二大科。它们广泛分布于土壤、海洋、淡水、河口和冰川等。其中,约2/3的线蚓科物种(近500种)为陆生种类,100余种仅分布在海洋中。尽管经历了200多年的探索,线蚓科仍然是认知最少的类群之一。尝试回顾人类对线蚓科环带动物分类学和系统发育学方面的认知历程和积累的知识体系,描述线蚓科关键的形态学分类特征以及线蚓科分类研究遇到的主要问题和障碍,展望了线蚓科分类学未来的研究方向。线蚓科的分类研究尚处于α分类阶段,体现在以物种探索为主和大量的已描述的物种需要验证等。而基于生物学物种概念(生殖隔离)的线蚓科物种探索,虽然有一些合理的逻辑解释,但缺乏严格的科学验证。线蚓科内多数属为复系,表明已建立的线蚓科分类系统仍然不能很好的反映线蚓科的自然进化历史。线蚓科分类面临的主要问题和障碍是未描述种类亟待发掘、已描述的物种需要验证、属/种的厘定以及现代属级概念的建立、DNA分类在线蚓科的应用和线蚓科内的系统发育关系研究亟待开展,以及物种探索的不平衡、经费和研究人才匮乏以及网络分类的缺失等。将分子学数据和系统发育物种概念纳入线蚓科的分类学研究,应该是线蚓科分类的一个方向。通过解读保守基因的信息,可以揭示线蚓科的祖先与它们生活的古环境长期斗争的历史,以及将优良的性状遗传给后代的过程和驱动力。而系统发育物种概念认为物种是拥有共同祖先的,物种仅能通过生殖隔离与系统发育重建一起加以验证。基于系统发育物种概念而构建的线蚓科分类系统,必将能真实的反映线蚓科内各分类单元的亲缘关系和进化轨迹。而将最新的线蚓科分类学知识传播于分类学知识的终端使用者,是线蚓分类学家的职责。这些知识将有助于提高人们对线蚓类在生态系统中功能的了解,如土壤有机质分解、养分矿化和健康评价以及评估气候变化等。 相似文献
3.
Neusa Hamada Vanderly Andrade-Souza Marcela De Paul Jeane Marcelle Cavalcante Nascimento 《Medical and veterinary entomology》2023,37(1):47-62
Problems related to the identity of Simuliidae species are impediments to effective disease control in Amazonia. Some of these species, such as Simulium oyapockense Floch & Abonnenc, 1946 (Diptera: Simuliidae), are vectors of the organisms that cause onchocerciasis and mansonellosis diseases. This blackfly species has a wide distribution in South America, and it is suspected of being a complex of cryptic species. The aim of this study is to characterize the nominal species S. oyapockense using partial COI gene sequences. Seven populations of S. oyapockense (morphologically identified) were analysed, including one from its type-locality. The other six populations were collected in Brazil and in Argentina. A taxon collected in Amazonas state, Brazil, with adults similar to S. oyapockense but with distinct pupae, was also included in the analysis (Simulium ‘S’). The nominal species S. oyapockense is circumscribed, and its geographical distribution is restricted to areas north of the Amazon River. Populations of S. oyapockense s.l. collected south of the Amazon River comprise a species complex that needs to be evaluated using integrative taxonomy. Simulium ‘S’ represents a species with unique morphological and molecular characteristics. Distinguishing cryptic species is a prerequisite for reducing the taxonomic impediment, especially in medically important taxa. 相似文献
4.
ROBERTO BERTOLANI LORENA REBECCHI SANDRA K. CLAXTON 《Zoological Journal of the Linnean Society》1996,116(1-2):139-148
Freshwater and semiterrestrial tardigrades produce either smooth shelled eggs laid in the exuvium or ornamented eggs laid freely, in contrast to the more primitive marine heterotardigrades which have smooth shelled free-laid eggs. Data are presented on the observation of free-laid ornamented eggs in the primitive non marine heterolardigrade genus Oreella and in a number ot e.utardigrade genera including Eohypsibius, Amphilus, Minibiotus and Macrobiotus. These findings have provided a sound basis for the formulation of a hypothesis in which the evolution of the tardigrade egg can be explained by two separate events. The first is the acquisition of ornamentation and the second is the utilization of the exuvium for oviposition with subsequent loss of egg ornamentation. This hypothesis is consistent with new taxonomic arrangements within eutardigrade families and genera (based on character) of the animals) which have led to a more uniform assortment in terms of egg types. This means that egg type (smooth or ornamented) becomes a valid taxonomic character at the generic level. 相似文献
5.
DNA barcodes are species‐specific genetic markers that allow taxonomic identification of biological samples. The promise of DNA barcoding as a rapid molecular tool for conducting biodiversity inventories has catalysed renewed efforts to document and catalogue the diversity of life, parallel to the large‐scale sampling conducted by Victorian naturalists. The unique contribution of DNA barcode data is in its ability to identify biotic material that would be impossible to classify using traditional taxonomic keys. However, the utility of DNA barcoding relies upon the construction of accurate barcode libraries that provide a reference database to match to unidentified samples. Whilst there has been much debate in the literature over the choice and efficacy of barcode markers, there has been little consideration of the practicalities of generating comprehensive barcode reference libraries for species‐rich floras. Here, we discuss several challenges to the generation of such libraries and present a case study from a regional biodiversity hotspot in southern Quebec. We suggest that the key challenges include (i) collection of specimens for rare or ephemeral species, (ii) limited access to taxonomic expertise necessary for reliable identification of reference specimens and (iii) molecular challenges in amplifying and matching barcode data. To be most effective, we recommend that sampling must be both flexible and opportunistic and conducted across the entire growing season by expert taxonomists. We emphasize that the success of the global barcoding initiative will depend upon the close collaboration of taxonomists, plant collectors, and molecular biologists. 相似文献
6.
Masato Ohtani Toshiaki Kondo Naoki Tani Saneyoshi Ueno Leong S. Lee Kevin K. S. Ng Norwati Muhammad Reiner Finkeldey Mohamad Na'iem Sapto Indrioko Koichi Kamiya Ko Harada Bibian Diway Eyen Khoo Kensuke Kawamura Yoshihiko Tsumura 《Molecular ecology》2013,22(8):2264-2279
Tropical rainforests in South‐East Asia have been affected by climatic fluctuations during past glacial eras. To examine how the accompanying changes in land areas and temperature have affected the genetic properties of rainforest trees in the region, we investigated the phylogeographic patterns of a widespread dipterocarp species, Shorea leprosula. Two types of DNA markers were used: expressed sequence tag‐based simple sequence repeats and chloroplast DNA (cpDNA) sequence variations. Both sets of markers revealed clear genetic differentiation between populations in Borneo and those in the Malay Peninsula and Sumatra (Malay/Sumatra). However, in the south‐western part of Borneo, genetic admixture of the lineages was observed in the two marker types. Coalescent simulation based on cpDNA sequence variation suggested that the two lineages arose 0.28–0.09 million years before present and that following their divergence migration from Malay/Sumatra to Borneo strongly exceeded migration in the opposite direction. We conclude that the genetic structure of S. leprosula was largely formed during the middle Pleistocene and was subsequently modified by eastward migration across the subaerially exposed Sunda Shelf. 相似文献
7.
Woodcock P Edwards DP Fayle TM Newton RJ Khen CV Bottrell SH Hamer KC 《Philosophical transactions of the Royal Society of London. Series B, Biological sciences》2011,366(1582):3256-3264
South East Asia is widely regarded as a centre of threatened biodiversity owing to extensive logging and forest conversion to agriculture. In particular, forests degraded by repeated rounds of intensive logging are viewed as having little conservation value and are afforded meagre protection from conversion to oil palm. Here, we determine the biological value of such heavily degraded forests by comparing leaf-litter ant communities in unlogged (natural) and twice-logged forests in Sabah, Borneo. We accounted for impacts of logging on habitat heterogeneity by comparing species richness and composition at four nested spatial scales, and examining how species richness was partitioned across the landscape in each habitat. We found that twice-logged forest had fewer species occurrences, lower species richness at small spatial scales and altered species composition compared with natural forests. However, over 80 per cent of species found in unlogged forest were detected within twice-logged forest. Moreover, greater species turnover among sites in twice-logged forest resulted in identical species richness between habitats at the largest spatial scale. While two intensive logging cycles have negative impacts on ant communities, these degraded forests clearly provide important habitat for numerous species and preventing their conversion to oil palm and other crops should be a conservation priority. 相似文献
8.
Abstract. 1. Invertebrate data identified to coarse groupings according to taxonomy or ecology are easier to obtain than species-level data. However, it is unclear if such data are suitable for detecting environmental change.
2. We compared the performance of four types of data (species, family, trophic group, and body size) to quantify the responses of beetle assemblages with three types of environmental change on the Atherton Tableland in north-eastern Queensland, Australia. Clearing of rainforest creates two levels of environmental change: first the extreme, forest loss, and second, the more subtle change associated with forest fragmentation. A strong rainfall gradient across the study landscape also influences the biota, imposing a third type of environmental change, independent of rainforest modification.
3. Almost 20 000 beetles were sampled from six replicate sites in each of pasture, small rainforest remnants, and both the edges and interiors of large rainforest remnants.
4. All four types of data showed significant multivariate differences in assemblage composition between pasture and rainforest sites. Species-level data in multivariate analyses showed an effect of fragmentation on small remnants and also showed variation which corresponded with the spatial aridity gradient across sites. Both of these patterns were only weakly evident or were non-existent at the level of family, trophic group, or body size class. No level of taxonomic resolution gave consistently stronger results when univariate tests were applied to individual component taxa.
5. We conclude that data above the species level may not have the sensitivity required to detect more subtle forms of environmental change. 相似文献
2. We compared the performance of four types of data (species, family, trophic group, and body size) to quantify the responses of beetle assemblages with three types of environmental change on the Atherton Tableland in north-eastern Queensland, Australia. Clearing of rainforest creates two levels of environmental change: first the extreme, forest loss, and second, the more subtle change associated with forest fragmentation. A strong rainfall gradient across the study landscape also influences the biota, imposing a third type of environmental change, independent of rainforest modification.
3. Almost 20 000 beetles were sampled from six replicate sites in each of pasture, small rainforest remnants, and both the edges and interiors of large rainforest remnants.
4. All four types of data showed significant multivariate differences in assemblage composition between pasture and rainforest sites. Species-level data in multivariate analyses showed an effect of fragmentation on small remnants and also showed variation which corresponded with the spatial aridity gradient across sites. Both of these patterns were only weakly evident or were non-existent at the level of family, trophic group, or body size class. No level of taxonomic resolution gave consistently stronger results when univariate tests were applied to individual component taxa.
5. We conclude that data above the species level may not have the sensitivity required to detect more subtle forms of environmental change. 相似文献
9.
Brett R. Scheffers Theodore A. Evans Stephen E. Williams David P. Edwards 《Biology letters》2014,10(12)
Vegetated habitats contain a variety of fine-scale features that can ameliorate temperate extremes. These buffered microhabitats may be used by species to evade extreme weather and novel climates in the future. Yet, the magnitude and extent of this buffering on a global scale remains unknown. Across all tropical continents and using 36 published studies, we assessed temperature buffering from within microhabitats across various habitat strata and structures (e.g. soil, logs, epiphytes and tree holes) and compared them to non-buffered macro-scale ambient temperatures (the thermal control). Microhabitats buffered temperature by 3.9°C and reduced maximum temperatures by 3.5°C. Buffering was most pronounced in tropical lowlands where temperatures were most variable. With the expected increase in extreme weather events, microhabitats should provide species with a local layer of protection that is not captured by traditional climate assessments, which are typically derived from macro-scale temperatures (e.g. satellites). Our data illustrate the need for a next generation of predictive models that account for species'' ability to move within microhabitats to exploit favourable buffered microclimates. 相似文献
10.
Fabian Brambach Christoph Leuschner Aiyen Tjoa Heike Culmsee 《Journal of Biogeography》2020,47(2):355-370
11.
To understand the effects of selective logging on animals we compared habitat use and ranging behaviour of a common understorey passerine bird, the red‐tailed bristlebill (Bleda syndactyla), in logged and unlogged forest in the Budongo Forest Reserve, Uganda. The secondary forest had been selectively logged about 50 years ago, and differed in vegetation structure from the unlogged, primary forest in particular by having a denser understorey. Home range size of radio‐tagged bristlebills was 10–20% larger (depending on data sample used) in unlogged forest compared with logged forest, but the difference was not significant. Movement rates during 1‐h observation periods were highest in unlogged forest. The bristlebill has been characterized as a bird of dense understorey vegetation, and data from unlogged forest in the present study suggested that areas with dense understorey were used more often than expected. In logged forest, no habitat preferences were found, probably because the forest had a dense understorey throughout. Assuming that smaller home ranges and lower movement rates indicate better habitat, there was no evidence that bristlebills were negatively affected by logging. The preference for dense understorey in unlogged forest suggests that the bristlebill may benefit from selective logging because this leads to an increase in dense understorey. 相似文献
12.
Abstract A population of frillneck lizards, Chlamydosaurus kingii, was monitored by radio telemetry and mark-recapture techniques between April 1991 and April 1994, as part of a landscape-scale fire experiment, in Kakadu National Park, Northern Territory. The study aimed to investigate both the short- and longer-term effects of fire on a lizard species in a tropical savanna where fires are frequent and often annual. Frillneck lizards are able to survive fires that occur in the first few months of the dry season by remaining perched in trees. A high level of mortality (29%) occurred during late dry-season fires, along with changes in their behavioural response to fire: sheltering in either larger trees or hollow termite mounds. Food is more accessible after fires due to the removal of ground vegetation. This is reflected in greater volume and diversity of prey in stomach contents after fires. This increase is more pronounced after late dry-season fires, possibly due to increased accessibility of prey caused by more complete vegetation removal. Frillneck lizards show an overall preference for trees with a dense canopy cover located in an area with a low density of grass. Fire has an effect on this relationship. Frillneck lizards in habitat unburnt for a number of years tend to perch in trees with a smaller canopy, whereas lizards in annually burnt habitat perch in trees with a dense canopy. Volume and composition of lizard stomach contents was broadly similar among fire treatments over a 2 year period, although termites were more predominant in stomach contents of lizards in unburnt habitat. Wet-season body condition is lower in lizards from unburnt habitat, although the reason for this is unclear. These results demonstrate the importance of different fire intensities and regimes on the ecology of a lizard species in a tropical savanna. 相似文献
13.
George K. Rogers 《Brittonia》2000,52(3):218-233
The genusAgave (Agavaceae) is revised taxonomically for the Lesser Antilles. All 12 previously recognized species are placed into synonymy underAgave karatto Miller. A neotype is selected for the nameAgave karatto, and lectotypes are designated forA. barbadensis Trel.,A. medioxima Trel.,A. obducta Trel.,A. vangrolae Trel., andA. ventum-versa Trel. Specimens are cited for most of the Lesser Antillean islands. That the Caribbean agaves are similar to the MexicanAgave nayaritensis Gentry is supported. The hypothesis that the pattern of partial sterility, clonality, and minimal morphological differentiation of the Lesser Antillean agaves is related to prehistoric human activity is developed based on similar patterns among mainland agaves and historical information. Uses for the archaeological “Barbados shell tool” may have included decorticating agave leaves for fiber extraction. 相似文献
14.
Paul M. Oliver Mark Adams Michael S.Y. Lee Mark N. Hutchinson Paul Doughty 《Proceedings. Biological sciences / The Royal Society》2009,276(1664):2001-2007
A major problem for biodiversity conservation and management is that a significant portion of species diversity remains undocumented (the ‘taxonomic impediment’). This problem is widely acknowledged to be dire among invertebrates and in developing countries; here, we demonstrate that it can be acute even in conspicuous animals (reptiles) and in developed nations (Australia). A survey of mtDNA, allozyme and chromosomal variation in the Australian gecko, genus Diplodactylus, increases overall species diversity estimates from 13 to 29. Four nominal species each actually represent multi-species complexes; three of these species complexes are not even monophyletic. The high proportion of cryptic species discovered emphasizes the importance of continuing detailed assessments of species diversity, even in apparently well-known taxa from industrialized countries. 相似文献
15.
露石是岩溶生态系统的一个典型特征物,其上发育着多样的微生境并殖居着多样的植物,但殖居植物与微生境之间的关系尚不清楚。该研究以西双版纳的一片发育在石灰山上的热带季节性湿润林为研究对象,测量586个露石微生境的自身特征与外界环境因子,并调查其殖居维管束植物的物种组成情况,采用Pearson相关性分析与冗余分析(RDA)来揭示露石微生境特征和环境因子与维管束植物丰富度之间的关系。结果表明:(1)热带岩溶森林中露石微生境的体积(5 148.33±31 501.92)cm3、面积(532.28±1 575.10)cm2等特征值的变异性较大。(2)微生境中共调查到44科82属90种1 518株乔木、灌木和草木植物,其中在岩溶基质中具有优势的适宜种占总物种数的35.6%。(3)RDA模型表明微生境的面积与土深对殖居植物物种组成及丰富度的解释度大于70%。(4)露石微生境内的殖居植物物种丰富度与面积之间存在明显的递衰指数型种-面积关系。综上认为,热带岩溶森林内露石表面微生境存在高度异质性,面积和土深是影响植物殖居的关键因子,种-面积关系主导了露石表面微生境的物种丰富度格局。 相似文献
16.
The intertidal gastropod, Littoraria articulata (Philippi), is common on the trunks of mangroves at Coorooman Creek, Central
Queensland. Individuals of shell length less than 3 mm were only found in empty tests of the barnacle Hexaminius popeiana
(Foster). Larger snails were exposed on the trunk or occasionally in crevices such as knot holes. The relationship between
shell length and shell strength differed between barnacle dwelling and larger L. articulata: in both cases it was linear,
but the rate of increase of strength with increasing length was significantly greater for barnacle dwelling snails than for
exposed ones. In contrast, there was an exponential relationship between shell strength and length for the weaker shelled
Littoraria filosa (Sowerby), which occurs higher on the tree and does not inhabit barnacles.
The survival of L. articulata was affected by the presence of crevices: significantly fewer disappeared from posts with artificial
crivices than from those which lacked them, and some snails testhered to posts appeared to have been eaten by fish. The importance
of crevices is discussed in relation to predation pressure, growth and habitat selection by larval L. articulata.
This revised version was published online in July 2006 with corrections to the Cover Date. 相似文献
17.
Despite being the second largest fish, basking sharks (Cetorhinus maximus) have been assumed to remain in discrete populations. Their known distribution encompasses temperate continental shelf areas, yet until now there has been no evidence for migration across oceans or between hemispheres. Here we present results on the tracks and behaviour of two basking sharks tagged off the British Isles, one of which released its tag off Newfoundland, Canada. During the shark's transit of the North Atlantic, she travelled a horizontal distance of 9589 km and reached a record depth of 1264 m. This result provides the first evidence for a link between European and American populations and indicates that basking sharks make use of deep-water habitats beyond the shelf edge. 相似文献
18.
Xiaohong Li Jinxia Huang Zuncheng Bai Hang Zou Wanyu Wang Wanyu Qi Maohua Ma 《Journal of Plant Ecology》2024,17(5):1
蜿蜒曲折的河岸带为植被提供了栖息地,对维持自然河流生态系统具有重要作用。然而,大坝建设已经显著改变了河岸形态和河流生态系统。为了恢复河岸生态系统,了解不同的河岸弯曲度对河岸带植物群落的影响至关重要。本研究旨在揭示河岸弯曲度对长江三峡库区河岸带植物群落结构和构建过程的生态影响。本研究将河岸带分为4种类型:凹形、凸形、波浪形和直线形,通过野外调查获取河岸带植物群落的组成和多样性等数据。研究结果表明:(1)与直线形河岸带群落相比,波浪形和凹形河岸表现出更高的物种多样性(香农-维纳多样性指数值高出1.5倍);(2)波浪形河岸促进了植物功能性状的分化,从而增强了生态系统功能,其功能分散指数(FDis)值是直线形河岸的1.3倍;(3)不同河岸之间的河岸群落构建机制也存在显著差异,标准化效应值(SES)表明凹形河岸的生态位分化程度(SES = 0.4)高于直线形河岸(SES = -0.6)。上述结果强调了不同的河岸弯曲度在影响河岸群落的多样性、结构和构建过程方面的重要性,意味着恢复河岸带植物群落时很有必要保持或恢复自然弯曲河岸。 相似文献
19.
Alan H. Fielding Paul F. Haworth David Anderson Stuart Benn Roy Dennis Ewan Weston D. Philip Whitfield 《Ibis》2020,162(2):400-415
Many large raptors exploit or rely on anabatic and orographic winds which provide vertical lift, to supplement or provide the energy fuelling flight. Airspace is therefore a critical habitat for such large raptors and its use is subject to the underlying terrestrial topography, because particular topographical features are more likely to provide wind-energetic lift. Accordingly, ridges and/or ‘rugged topography’ are common preferred features in habitat use by large raptors. Our study aimed to provide a simple model of space use for a large raptor, the Golden Eagle Aquila chrysaetos, based on thousands of GPS telemetry records during juvenile dispersal of 92 birds tagged as nestlings between 2007 and 2016 across upland Scotland. Model development was based on the hypothesis that four topographical variables would be influential: slope, aspect, altitude and distance from ridge. The telemetry dataset was divided into training and two testing components. The first testing set was derived by a temporal split resulting in approximately equal sample size on records and some temporal overlap in individuals’ records with training data. The second testing set involved no individuals from the training set. Aspect was removed early in training model development because it was not influential. The model found that young Golden Eagles preferred, or used according to availability, space above slopes greater than 10°, at an altitude of ≥ 300 m, and within 300 m of a ridge. The test data were highly correlated with those from the training data in the model variables, and performance as regard to expected preferences from the model was improved in both test datasets, indicating the model was robust. Given the apparent universal nature of large raptor dependence on topography, that topography is relatively immutable according to time and use, and that topographical data are readily available, we commend our approach to other habitat preference studies of Golden Eagles and other large raptors elsewhere. 相似文献
20.
Takahiro Hirano Yuichi Kameda Kazuki Kimura Satoshi Chiba 《Biological journal of the Linnean Society. Linnean Society of London》2015,114(1):229-241
The role of natural selection in phenotypic evolution is central to evolutionary biology. Phenotypic evolution is affected by various factors other than adaptation, and recent focus has been placed on the effects of phylogenetic constraints and niche conservatism on phenotypic evolution. Here, we investigate the relationship between the shell morphology and habitat use of bradybaenid land snails of the genus Aegista and clarify the causes of the divergence in shell morphology among phylogenetically related species. The results of ancestral state reconstruction showed that arboreal species have evolved independently from ground‐dwelling species at least four times. A significant association was found between shell shape and habitat use, despite the existence of a certain degree of phylogenetic constraint between these traits. A principal component analysis showed that arboreal species tend to have a relatively high‐spired shell with a narrow umbilicus. By contrast, ground‐dwelling species have a low‐spired shell with a wide umbilicus. Although the latitude and elevation of the sampling locations showed no relationship with shell morphology, the geology of the sampling locations affected the shell size of arboreal species. The development of a well‐balanced shell shape is one effective method for reducing the cost of locomotion under the force of gravity in each life habitat, resulting in the divergence in shell morphology and the independent evolution of morphologically similar species among different lineages. The present study suggests that ecological divergence is probably the cause of shell morphology divergence in land snails. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 114 , 229–241. 相似文献