Exploration of Inorganic C and N Assimilation by Soil Microbes with Time-of-Flight Secondary Ion Mass Spectrometry

Stable C and N isotopes have long been used to examine properties of various C and N cycling processes in soils. Unfortunately, relatively large sample sizes are needed for accurate gas phase isotope ratio mass spectrometric analysis. This limitation has prevented researchers from addressing C and N cycling issues on microbially meaningful scales. Here we explored the use of time-of-flight secondary ion mass spectrometry (TOF-SIMS) to detect ¹³C and ¹⁵N assimilation by individual bacterial cells and to quantify N isotope ratios in bacterial samples and individual fungal hyphae. This was accomplished by measuring the relative abundances of mass 26 (¹²C¹⁴N⁻) and mass 27 (¹³C¹⁴N⁻ and ¹²C¹⁵N⁻) ions sputtered with a Ga⁺ probe from cells adhered to an Si contact slide. TOF-SIMS was successfully used to locate and quantify the relative ¹⁵N contents of individual hyphae that grew onto Si contact slides in intimate contact with a model organomineral porous matrix composed of kaolin, straw fragments, and freshly deposited manure that was supplemented with ¹⁵NO₃⁻. We observed that the ¹⁵N content of fungal hyphae grown on the slides was significantly lower in regions where the hyphae were influenced by N-rich manure than in regions influenced by N-deficient straw. This effect occurred over distances of tens to hundreds of microns. Our data illustrate that TOF-SIMS has the potential to locate N-assimilating microorganisms in soil and to quantify the ¹⁵N content of cells that have assimilated ¹⁵N-labeled mineral N and shows promise as a tool with which to explore the factors controlling microsite heterogeneities in soil.     

Effect of bioaugmentation and nitrogen supplementation on composting of paddy straw

A composting experiment was conducted to evaluate the effect of a hyperlignocellulolytic fungal consortium and different nitrogen amendments on paddy straw composting in terms of changes in physicochemical and biological parameters. A fungal consortium comprising four lignocellulolytic mesophilic fungal cultures was used as inoculum for bioaugmentation of paddy straw in perforated pits. The comparative effect of farmyard manure (FYM), soybean trash, poultry litter and urea on the composting process was evaluated at monthly intervals in terms of physicochemical (pH, EC, available P, C:N ratio and humus content) and biological (enzymatic and microbial activity) parameters. The compost prepared from bioaugmented paddy straw composting mixture, with poultry manure as nitrogen supplement attained desirable C:N ratio in 1 month and displayed least phytotoxicity levels along with higher production of β-1,4-Exoglucanase. The combined activity of the autochthonous composting microbiota as well as the externally applied fungal inoculum accelerated the composting process of paddy straw. Supplementation of paddy straw with poultry manure in 8:1 ratio was identified as the best treatment to hasten the composting process. This study highlights the importance of application of fungal inoculum and an appropriate N-amendment such as poultry manure for preparation of compost using a substrate having high C:N ratio, such as paddy straw.     

氮稳定同位素技术在陆地生态系统氮循环研究中的应用

在过去几十年中, 氮(N)稳定同位素技术的发展提高了人们对于陆地生态系统氮循环的认识。该文回顾了氮稳定同位素技术在研究生态系统氮循环中的历史, 综述了最近十多年来氮稳定同位素技术在陆地生态系统氮循环研究中的典型案例, 包括利用氮同位素自然丰度鉴定植物氮来源、指示生态系统氮状态和量化过程速率, 利用¹⁵N标记技术示踪氮的去向和再分布等。该文同时指出这些应用中存在的问题, 以及在陆地生态系统上氮稳定同位素技术今后研究的重点发展方向。     

麦田土壤真菌多样性对麦玉轮作长期秸秆还田和配施有机肥的响应

【背景】土壤真菌主导田间秸秆腐解的过程,秸秆还田配施有机肥可为真菌提供良好的营养物质。【目的】研究麦玉轮作模式下长期秸秆还田配施有机肥对麦田土壤真菌多样性的影响。【方法】依托山西南部麦玉轮作区长达14年的秸秆还田和施有机肥长期定位试验,采用高通量测序开展土壤真菌群落结构和多样性对不施肥+秸秆清茬(CK)、氮磷化肥+秸秆清茬(NP)、氮磷化肥+秸秆还田(SNP)、氮磷化肥+有机肥+秸秆清茬(NPM)及氮磷化肥+秸秆还田+有机肥(SNPM)的响应差异研究。【结果】秸秆还田和施有机肥处理组的物种丰富度指数、Chao1指数和ACE指数均高于CK。5个处理共产生953个分类操作单元(operational taxonomic units, OTU),CK、NP、NPM、SNP和SNPM分别具有398、451、472、462和440个OTU。在门水平上共检测出9个菌门,其中子囊菌门(Ascomycota)、毛霉门(Mucoromycota)和担子菌门(Basidiomycota)为3个主要菌门,各处理中所占丰度差异显著;在属水平上共检测出262个真菌属,其中CK丰度较高的3个属为柄孢壳菌属(Podospora) 18.85%、被孢霉属(Mortierella) 16.67%和镰刀菌属(Fusarium) 7.77%;NP、NPM、SNP和SNPM丰度较高的前3个相同属均为Dendrostilbella、毛葡孢属(Botryotrichum)和被孢霉属(Mortierella),但相对丰度值存在差异。由聚类分析可知,NPM和SNPM群落组成相似度高,归为一类,而CK、NP、SNP各独立为一类。与环境因子间冗余分析发现,TN含量是影响土壤真菌群落结构的关键因子,也受速效磷、pH、速效钾、碱解氮和全磷等环境指标影响。【结论】长期秸秆还田和施有机肥改变了小麦土壤真菌种群结构和多样性。     

Mycorrhizal mediation of plant N acquisition and residue decomposition: Impact of mineral N inputs

Mycorrhizas are ubiquitous plant–fungus mutualists in terrestrial ecosystems and play important roles in plant resource capture and nutrient cycling. Sporadic evidence suggests that anthropogenic nitrogen (N) input may impact the development and the functioning of arbuscular mycorrhizal (AM) fungi, potentially altering host plant growth and soil carbon (C) dynamics. In this study, we examined how mineral N inputs affected mycorrhizal mediation of plant N acquisition and residue decomposition in a microcosm system. Each microcosm unit was separated into HOST and TEST compartments by a replaceable mesh screen that either prevented or allowed AM fungal hyphae but not plant roots to grow into the TEST compartments. Wild oat (Avena fatua L.) was planted in the HOST compartments that had been inoculated with either a single species of AM fungus, Glomus etunicatum, or a mixture of AM fungi including G. etunicatum. Mycorrhizal contributions to plant N acquisition and residue decomposition were directly assessed by introducing a mineral ¹⁵N tracer and ¹³C‐rich residues of a C₄ plant to the TEST compartments. Results from ¹⁵N tracer measurements showed that AM fungal hyphae directly transported N from the TEST soil to the host plant. Compared with the control with no penetration of AM fungal hyphae, AM hyphal penetration led to a 125% increase in biomass ¹⁵N of host plants and a 20% reduction in extractable inorganic N in the TEST soil. Mineral N inputs to the HOST compartments (equivalent to 5.0 g N m^?2 yr^?1) increased oat biomass and total root length colonized by mycorrhizal fungi by 189% and 285%, respectively, as compared with the no‐N control. Mineral N inputs to the HOST plants also reduced extractable inorganic N and particulate residue C proportion by 58% and 12%, respectively, in the corresponding TEST soils as compared to the no‐N control, by stimulating AM fungal growth and activities. The species mixture of mycorrhizal fungi was more effective in facilitating N transport and residue decomposition than the single AM species. These findings indicate that low‐level mineral N inputs may significantly enhance nutrient cycling and plant resource capture in terrestrial ecosystems via stimulation of root growth, mycorrhizal functioning, and residue decomposition. The long‐term effects of these observed alterations on soil C dynamics remain to be investigated.     

Carbon and nutrient losses during manure storage under traditional and improved practices in smallholder crop-livestock systems—evidence from Kenya

In the absence of mineral fertiliser, animal manure may be the only nutrient resource available to smallholder farmers in Africa, and manure is often the main input of C to the soil when crop residues are removed from the fields. Assessments of C and nutrient balances and cycling within agroecosystems or of greenhouse gas emissions often assume average C and nutrient mass fractions in manure, disregarding the impact that manure storage may have on C and nutrient losses from the system. To quantify such losses, in order to refine our models of C and nutrient cycling in smallholder (crop-livestock) farming systems, an experiment was conducted reproducing farmers’ practices: heaps vs. pits of a mix of cattle manure and maize stover (2:3 v/v) stored in the open air during 6 months. Heaps stored under a simple roof were also evaluated as an affordable improvement of the storage conditions. The results were used to derive empirical models and graphs for the estimation of C and nutrient losses. Heaps and pits were turned every month, weighed, and sampled to determine organic matter, total and mineral N, P and K mass fractions. Soils beneath heaps/pits were sampled to measure mineral N to a depth of 1 m, and leaching tube tests in the laboratory were used to estimate P leaching from manure. After 6 months, ca. 70% remained of the initial dry mass of manure stored in pits, but only half of or less of the manure stored in heaps. The stored manure lost 45% of its C in the open air and 69% under roof. The efficiencies of nutrient retention during storage varied between 24–38% for total N, 34–38% for P and 18–34% for K, with the heaps under a roof having greater efficiencies of retention of N and K. Laboratory tests indicated that up to 25% of the P contained in fresh manure could be lost by leaching. Results suggest that reducing the period of storage by, for example, more frequent application and incorporation of manure into the soil may have a larger impact on retaining C and nutrient within the farm system than improving storage conditions.     

Nitrogen isotopes in ectomycorrhizal sporocarps correspond to belowground exploration types

Nitrogen isotope values (δ¹⁵N) are higher in ectomycorrhizal fungi than in their plant hosts but the wide variability in δ¹⁵N among sporocarps of different fungal taxa is unexplained. We propose that fungal δ¹⁵N reflects sequestration of fungal nitrogen to build fungal biomass, and should accordingly reflect fungal exploration strategies and hyphal properties. To test this, we compared δ¹⁵N to exploration types, hyphal hydrophobicity, and the presence of rhizomorphs in ectomycorrhizal species from surveys at four sites in temperate and boreal coniferous forests. Fungi with exploration types of high biomass, such as long-distance (e.g., Suillus), medium-distance mat (e.g., Hydnellum), and medium-distance fringe (e.g., Cortinarius) were 4–7‰ more enriched in ¹⁵N than fungi with exploration types of low biomass [medium-distance smooth (e.g., Amanita), short-distance (e.g., Inocybe), and contact (e.g., Hygrophorus)]. High biomass types comprised 79% (Åheden, northern Sweden), 65% (Deer Park, Pacific Northwest, USA), 45% (Stadsskogen, central Sweden), and 39% (Hoh, Pacific Northwest, USA) of ectomycorrhizal species, with these types more prevalent at sites of lower nitrogen availability. Species with hydrophobic hyphae or with rhizomorphs were 3–4‰ more enriched in ¹⁵N than taxa with hydrophilic hyphae or without rhizomorphs. The consistency of these patterns suggest that δ¹⁵N measurements could provide insights into belowground functioning of poorly known taxa of ectomycorrhizal fungi and into relative fungal biomass across ectomycorrhizal communities.     

Enzymatic activities and stable isotope patterns of ectomycorrhizal fungi in relation to phylogeny and exploration types in an afrotropical rain forest

? Ectomycorrhizal (ECM) fungi obtain both mineral and simple organic nutrients from soil and transport these to plant roots. Natural abundance of stable isotopes ((15) N and (13) C) in fruit bodies and potential enzymatic activities of ECM root tips provide insights into mineral nutrition of these mutualistic partners. ? By combining rDNA sequence analysis with enzymatic and stable isotope assays of root tips, we hypothesized that phylogenetic affinities of ECM fungi are more important than ECM exploration type, soil horizon and host plant in explaining the differences in mineral nutrition of trees in an African lowland rainforest. ? Ectomycorrhizal fungal species belonging to extraradical mycelium-rich morphotypes generally displayed the strongest potential activities of degradation enzymes, except for laccase. The signature of (15) N was determined by the ECM fungal lineage, but not by the exploration type. ? Potential enzymatic activities of root tips were unrelated to (15) N signature of ECM root tip. The lack of correlation suggests that these methods address different aspects in plant nutrient uptake. Stable isotope analysis of root tips could provide an additional indirect assessment of fungal and plant nutrition that enables enhancement of taxonomic coverage and control for soil depth and internal nitrogen cycling in fungal tissues.     

Ammonia emissions during vermicomposting of sheep manure

The effect of C:N ratio, temperature and water content on ammonia volatilization during two-phase composting of sheep manure was evaluated. The aerobic phase was conducted under field conditions. This was followed by Phase II, vermicomposting, conducted in the laboratory under controlled conditions of water content (70% and 80%) and temperature (15 and 22 °C). The addition of extra straw lead to a 10% reduction in NH3 volatilization compared to sheep manure composted without extra straw. Temperature and water content significantly effected ammonia volatilization at 0 day in Phase II, with a water content of 70% and temperature of 22 °C leading to greater losses of ammonia. Nitrogen loss by ammonia volatilization during vermicomposting ranged from 8% to 15% of the initial N content. The addition of extra straw did not result in significant differences in total carbon content following vermicomposting.     

Effect of low initial C/N ratio on aerobic composting of swine manure with rice straw

Two pilot composting experiments were conducted to investigate the effect of low initial C/N ratio on the composting of swine manure with rice straw by measuring physical and chemical parameters. The results showed that the thermophilic duration of bin 1 and bin 2 was long enough to satisfy the sanitary standard, and swine manure could reach maturity. Bin 1 containing larger amount of swine manure and less amount of rice straw showed a higher nitrogen loss (8%), shorter thermophilic phase, and longer maturity time (about 2 weeks) than bin 2. However, economical analysis showed a lower initial C/N ratio (20) could reduce 172 kg rice straw per ton fresh swine manure than a higher C/N ratio (25), and more swine manure could also be treated. Therefore, a low initial C/N ratio (20) could be suggested in the composting of swine manure with rice straw.     

Determination of the mechanism of orotidine 5'-monophosphate decarboxylase by isotope effects

Orotidine 5'-monophosphate shows a (15)N isotope effect of 1.0036 at N-1 for decarboxylation catalyzed by orotidine 5'-monophosphate decarboxylase. Picolinic acid shows a (15)N isotope effect of 0.9955 for decarboxylation in ethylene glycol at 190 degrees C, while N-methyl picolinic acid shows a (15)N isotope effect of 1.0053 at 120 degrees C. The transition state for enzymatic decarboxylation of orotidine 5'-monophosphate resembles the transition state for N-methyl picolinic acid in that no bond order changes take place at N-1. This rules out enolization to give a quaternary nitrogen at N-1 in the enzymatic mechanism and suggests a carbanion intermediate stabilized by simple electrostatic interaction with Lys-93. The driving force for the reaction appears to be ground-state destabilization resulting from charge repulsion between the carboxyl of the substrate and Asp-91.     

15N自然丰度法在陆地生态系统氮循环研究中的应用

随着氮沉降的不断增加以及人们对全球变化问题的日益关注, 稳定同位素技术在全球变化研究中得到广泛的应用。因为植物和土壤的氮同位素组成记录了氮循环影响因子的综合作用, 并且具有测量简单以及不受取样时间和空间限制的优点, 所以氮同位素自然丰度法被用于氮循环的研究中。该文从氮循环过程中植物和土壤的氮分馏入手, 总结国内外相关文献, 阐述了植物和土壤氮自然丰度在预测生态系统氮饱和和氮循环长期变化趋势中的应用; 总结了利用树轮δ ¹⁵N法研究氮循环过程中应该注意的事项以及目前尚未解决的问题。     

Evaluation of thermophilic fungal consortium for paddy straw composting

Out of 10 thermophilic fungi isolated from wheat straw, farm yard manure, and soil, only three showed highest cellobiase, carboxymethyl cellulase, xylanase, and FPase activities. They were identified as Aspergillus nidulans (Th₄), Scytalidium thermophilum (Th₅), and Humicola sp. (Th₁₀). A fungal consortium of these three fungi was used to compost a mixture (1:1) of silica rich paddy straw and lignin rich soybean trash. The composting of paddy straw for 3 months, during summer period in North India, resulted in a product with C:N ratio 9.5:1, available phosphorus 0.042% and fungal biomass 6.512 mg of N-acetyl glucosamine/100 mg of compost. However, a C:N ratio of 10.2:1 and highest humus content of 3.3% was achieved with 1:1 mixture of paddy straw and soybean trash. The fungal consortium was effective in converting high silica paddy straw into nutritionally rich compost thereby leading to economical and environment friendly disposal of this crop residue.     

Carbon and Nitrogen Isotopes from Top Predator Amino Acids Reveal Rapidly Shifting Ocean Biochemistry in the Outer California Current

Climatic variation alters biochemical and ecological processes, but it is difficult both to quantify the magnitude of such changes, and to differentiate long-term shifts from inter-annual variability. Here, we simultaneously quantify decade-scale isotopic variability at the lowest and highest trophic positions in the offshore California Current System (CCS) by measuring δ¹⁵N and δ¹³C values of amino acids in a top predator, the sperm whale (Physeter macrocephalus). Using a time series of skin tissue samples as a biological archive, isotopic records from individual amino acids (AAs) can reveal the proximate factors driving a temporal decline we observed in bulk isotope values (a decline of ≥1 ‰) by decoupling changes in primary producer isotope values from those linked to the trophic position of this toothed whale. A continuous decline in baseline (i.e., primary producer) δ¹⁵N and δ¹³C values was observed from 1993 to 2005 (a decrease of ∼4‰ for δ¹⁵N source-AAs and 3‰ for δ¹³C essential-AAs), while the trophic position of whales was variable over time and it did not exhibit directional trends. The baseline δ¹⁵N and δ¹³C shifts suggest rapid ongoing changes in the carbon and nitrogen biogeochemical cycling in the offshore CCS, potentially occurring at faster rates than long-term shifts observed elsewhere in the Pacific. While the mechanisms forcing these biogeochemical shifts remain to be determined, our data suggest possible links to natural climate variability, and also corresponding shifts in surface nutrient availability. Our study demonstrates that isotopic analysis of individual amino acids from a top marine mammal predator can be a powerful new approach to reconstructing temporal variation in both biochemical cycling and trophic structure.     

Fungal and bacterial growth in soil with plant materials of different C/N ratios

Fungal (acetate-in-ergosterol incorporation) and bacterial (leucine/thymidine incorporation) growth resulting from alfalfa (C/N=15) and barley straw (C/N=75) addition was studied in soil microcosms for 64 days. Nitrogen amendments were used to compensate for the C/N difference between the substrates. Fungal growth increased to a maximum after 3–7 days, at five to eight times the controls, following the addition of straw, and three to four times the controls following the addition of alfalfa. After 20–30 days, the fungal growth rate converged with the controls, resulting in a cumulative fungal growth two to three times the controls following straw addition and about 20% higher than the controls following alfalfa addition. The bacterial growth rate reached rates five times the controls following alfalfa addition and twice that of the controls following straw addition after 3–7 days. It remained elevated after 64 days. The cumulative bacterial growth was two and four times the controls following straw and alfalfa addition, respectively. A negative correlation was found between N addition and bacterial growth, while N stimulated fungal growth. Thus, the C/N ratio of the additions (substrate and extra N) could not entirely explain the different results regarding fungal and bacterial growths. Respiration was not always related to the combined growth of the microorganisms, emphasizing the requirement for a better understanding of growth efficiencies of fungi and bacteria.     

Modelling of manure production by pigs and NH3, N2O and CH4 emissions. Part II: effect of animal housing, manure storage and treatment practices

A model has been developed to predict pig manure evolution (mass, dry and organic matter, N, P, K, Cu and Zn contents) and related gaseous emissions (methane (CH4), nitrous oxide (N2O) and ammonia (NH3)) from pig excreta up to manure stored before spreading. This model forms part of a more comprehensive model including the prediction of pig excretion. The model simulates contrasted management systems, including different options for housing (slatted floor or deep litter), outside storage of manure and treatment (anaerobic digestion, biological N removal processes, slurry composting (SC) with straw and solid manure composting). Farmer practices and climatic conditions, which have significant effects on gaseous emissions within each option, have also been identified. The quantification of their effects was based on expert judgement from literature and local experiments, relations from mechanistic models or simple emission factors, depending on existing knowledge. The model helps to identify relative advantages and weaknesses for each system. For example, deep-litter with standard management practices is associated with high-greenhouse gas (GHG) production (+125% compared to slatted floor) and SC on straw is associated with high NH3 emission (+15% compared to slatted floor). Another important result from model building and first simulations is that farmer practices and the climate induce an intra-system (for a given infrastructure) variability of NH3 and GHG emissions nearly as high as inter-system variability. For example, in deep-litter housing systems, NH3 and N2O emissions from animal housing may vary between 6% and 53%, and between 1% and 19% of total N excreted, respectively. Thus, the model could be useful to identify and quantify improvement margins on farms, more precisely or more easily than current methodologies.     

Wide geographical and ecological distribution of nitrogen and carbon gains from fungi in pyroloids and monotropoids (Ericaceae) and in orchids

* Stable isotope abundance analyses recently revealed that some European green orchids and pyroloids (Ericaceae) are partially myco-heterotrophic, exploiting mycorrhizal fungi for organic carbon and nitrogen. Here we investigate related species to assess their nutritional mode across various forest and climate types in Germany and California. * C- and N-isotope signatures of five green pyroloids, three green orchids and several obligate myco-heterotrophic species (including the putatively fully myco-heterotrophic Pyrola aphylla) were analysed to quantify the green plants' nutrient gain from their fungal partners and to investigate the constancy of enrichment in (13)C and (15)N of fully myco-heterotrophic plants from diverse taxa and locations relative to neighbouring autotrophic plants. * All green pyroloid and one orchid species showed significant (15)N enrichment, confirming incorporation of fungi-derived N compounds while heterotrophic C gain was detected only under low irradiance in Orthilia secunda. Pyrola aphylla had an isotope signature equivalent to those of fully myco-heterotrophic plants. * It is demonstrated that primarily N gain from mycorrhizal fungi occurred in all taxonomic groups investigated across a wide range of geographical and ecological contexts. The (13)C and (15)N enrichment of obligate myco-heterotrophic plants relative to accompanying autotrophic plants turned out as a fairly constant parameter.     

Changes in microbial biomass indices after 10 years of farmyard manure and vegetal fertilizer application to a sandy soil under organic management

The main objective of the second Darmstadt trial was to investigate the effects of vegetal fertilizers on soil properties and crop yield in comparison with farmyard manure. The experiment consisted of seven treatments: (i) inorganic fertilizers, (ii) vegetal organic fertilizers, (iii) vegetal organic fertilizers equivalent to biodynamic preparations, (iv) cattle farmyard manure, (v) cattle farmyard manure with addition of biodynamic preparations, (vi) high level of cattle farmyard manure, and (vii) high level of cattle farmyard manure with biodynamic preparations. The soil properties analyzed were pH, soil organic C, N, P, and S, soil microbial biomass C, N, and P, basal respiration and fungal ergosterol. The application of vegetal fertilizers had slightly negative effects on soil organic C, no effects on crop yield (potato, winter rye) and microbial biomass, but positive effects on ergosterol in comparison with farmyard manure. The increase in ergosterol was caused by straw return in the vegetal, but also in the inorganic fertilizer treatments. The biodynamic preparations did not affect the contents of soil organic C and total N. The low effectiveness of vegetal fertiliser in maintaining soil organic C levels is of particular importance for organic cropping systems and should be examined further under different site conditions.     

Ecophysiology of 13C and 15N isotopic fractionation in forest fungi and the roots of the saprotrophic-mycorrhizal divide

To quantify and characterize N and C isotopic fractionation effects due to fungal transformation of organic substrates in forest ecosystems, we performed a field study in California and a meta-analysis of three additional studies conducted by others across the Northern Hemisphere. Basidiomycete fungal biomass was consistently enriched for the heavier isotope for C relative to substrate and either enriched or depleted for N relative to atmospheric N. Extent and pattern of fractionation was very variable, but the distinction between ectomycorrhizal and saprotrophic basidiomycetes was strongly supported, particularly when dual isotope analyses were performed. This differentiation, which we call the "EM-SAP Divide" holds for studies within a restricted ecosystem, but becomes less distinct over larger geographical regions, removing the rationale for using direct isotopic values from single specimens as diagnostic of ecophysiological role. For C, the EM-SAP Divide seems to reflect substrate effects, potentially due to differential access to recently synthesized versus recycled organic compounds, rather than distinct physiological pathways. Once substrate and ecophysiological role effects are removed, our meta-analysis suggests the existence of more than one mechanism causing C fractionations in fungi which is found equally in ectomycorrhizal and saprotrophic fungi. Similarly, a multimodal distribution of '¹⁵N values suggests that physiological effects may play a much stronger influence on N natural isotopic distributions in fungi. Our meta-analysis provides a firm statistical base to evaluate fungal ecological statements based on natural isotopic distributions of C and N. We call into question the current practice of using direct isotopic measurements to make statements about trophic relationships of fungi in the absence of other supporting evidence.     

Microbial necromass in cropland soils: A global meta-analysis of management effects

Microbial necromass is a large and persistent component of soil organic carbon (SOC), especially under croplands. The effects of cropland management on microbial necromass accumulation and its contribution to SOC have been measured in individual studies but have not yet been summarized on the global scale. We conducted a meta-analysis of 481-paired measurements from cropland soils to examine the management effects on microbial necromass and identify the optimal conditions for its accumulation. Nitrogen fertilization increased total microbial necromass C by 12%, cover crops by 14%, no or reduced tillage (NT/RT) by 20%, manure by 21%, and straw amendment by 21%. Microbial necromass accumulation was independent of biochar addition. NT/RT and straw amendment increased fungal necromass and its contribution to SOC more than bacterial necromass. Manure increased bacterial necromass higher than fungal, leading to decreased ratio of fungal-to-bacterial necromass. Greater microbial necromass increases after straw amendments were common under semi-arid and in cool climates in soils with pH <8, and were proportional to the amount of straw input. In contrast, NT/RT increased microbial necromass mainly under warm and humid climates. Manure application increased microbial necromass irrespective of soil properties and climate. Management effects were especially strong when applied during medium (3–10 years) to long (10+ years) periods to soils with larger initial SOC contents, but were absent in sandy soils. Close positive links between microbial biomass, necromass and SOC indicate the important role of stabilized microbial products for C accrual. Microbial necromass contribution to SOC increment (accumulation efficiency) under NT/RT, cover crops, manure and straw amendment ranged from 45% to 52%, which was 9%–16% larger than under N fertilization. In summary, long-term cropland management increases SOC by enhancing microbial necromass accumulation, and optimizing microbial necromass accumulation and its contribution to SOC sequestration requires site-specific management.