A Decision Making Framework for Sediment Assessment Developed for the Great Lakes

A rule-based, weight-of-evidence approach for assessing contaminated sediment on a site-by-site basis in the Laurentian Great Lakes is described. Information from four lines of evidence—surficial sediment chemistry, laboratory toxicity, invertebrate community structure and invertebrate tissue biomagnification—is integrated within each line to produce a pass (‘?’) or fail (‘+’) conclusion, then combined across lines resulting in one of 16 outcome scenarios. For each scenario, the current status of the site, interpretation, and management recommendations are given. Management recommendation(s) can range from no action to risk management required (9 of the 16 scenarios). Within each line of evidence, the strength of each response can also be ranked (e.g., score of 1 to 4), providing managers with more information to aid decision options. Other issues that influence scientific management recommendations include site stability, subsurface contamination and spatial extent of effects. The decision framework is intended to be transparent, comprehensive (incorporating exposure, effect, weight-of-evidence, and risk), and minimally uncertain.     

A Proposed Framework for the Management of Water Quality in Arid-Region Lakes

For arid-region lakes, management conflicts are likely to occur between quantity and quality of water supplied: increasing quantity of water supply can lead to water quality deterioration. Such conflicts can best be resolved within an effective management program based on awareness and cooperation at all levels of water management from policy makers to experts. We propose a general framework for designing effective water resource management programs for lakes based on concrete definitions of management criteria such as water quality. The proposed system requires close interaction between policy makers, water resource managers, water suppliers and users, hydrological engineers and limnologists. The significance of mathematical modeling as a self-organizing tool of the management program is emphasized, especially with regards to designing limnological investigations directed toward lake management. We illustrate the application of this approach to water resource management in arid-region lakes (Lake Kinneret, Israel and Lake Sevan, Armenia), where artificial variability of lake morphometry due to water use is a forcing function affecting water quality.     

Interactions Between Physical Template and Self-organization Shape Plant Dynamics in a Stream Ecosystem

Ecosystems - Both internal feedbacks and preexisting heterogeneity of a physical template can produce biological patchiness in ecosystems. The relative importance of the two drivers might change...     

Physical Modeling of the Composting Ecosystem

A composting physical model with an experimental chamber with a working volume of 14 × 10³ cm³ (0.5 ft³) was designed to avoid exaggerated conductive heat loss resulting from, relative to field-scale piles, a disproportionately large outer surface-area-to-volume ratio. In the physical model, conductive flux (rate of heat flow through chamber surfaces) was made constant and slight through a combination of insulation and temperature control of the surrounding air. This control was based on the instantaneous conductive flux, as calculated from temperature differentials via a conductive heat flow model. An experiment was performed over a 10-day period in which control of the composting process was based on ventilative heat removal in reference to a microbially favorable temperature ceiling (temperature feedback). By using the conduction control system (surrounding air temperature controlled), 2.4% of the total heat evolved from the chamber was through conduction, whereas the remainder was through the ventilative mechanisms of the latent heat of vaporization and the sensible temperature increase of air. By comparison, with insulation alone (the conduction control system was not used) conduction accounted for 33.5% of the total heat evolved. This difference in conduction resulted in substantial behavioral differences with respect to the temperature of the composting matrix and the amount of water removed. By emphasizing the slight conduction system (2.4% of total heat flow) as being a better representative of field conditions, a comparison was made between composting system behavior in the laboratory physical model and field-scale piles described in earlier reports. Numerous behavioral patterns were qualitatively similar in the laboratory and field (e.g., temperature gradient, O₂ content, and water removal). It was concluded that field-scale composting system behavior can be simulated reasonably faithfully in the physical model.     

Nitrogen-Cycling Genes in Epilithic Biofilms of Oligotrophic High-Altitude Lakes (Central Pyrenees,Spain)

Microbial biofilms in oligotrophic environments are the most reactive component of the ecosystem. In high-altitude lakes, exposed bedrock, boulders, gravel, and sand in contact with highly oxygenated water and where a very thin epilithic biofilm develops usually dominate the littoral zone. Traditionally, these surfaces have been considered unsuitable for denitrification, but recent investigations have shown higher biological diversity than expected, including diverse anaerobic microorganisms. In this study, we explored the presence of microbial N-cycling nirS and nirK (denitrification through the conversion of NO₂ ^? to NO), nifH (N₂ fixation), anammox (anaerobic ammonium oxidation), and amoA (aerobic ammonia oxidation, both bacterial and archaeal) genes in epilithic biofilms of a set of high-altitude oligotrophic lakes in the Pyrenees. The concentrations of denitrifying genes determined by quantitative PCR were two orders of magnitude higher than those of ammonia-oxidizing genes. Both types of genes were significantly correlated, suggesting a potential tight coupling nitrification-denitrification in these biofilms that deserves further confirmation. The nifH gene was detected after nested PCR, and no signal was detected for the anammox-specific genes used. The taxonomic composition of denitrifying and nitrogen-fixing genes was further explored by cloning and sequencing. Interestingly, both microbial functional groups were richer and more genetically diverse than expected. The nirK gene, mostly related to Alphaproteobacteria (Bradyrhizobiaceae), dominated the denitrifying gene pool as expected for oxygen-exposed habitats, whereas Deltaproteobacteria (Geobacter like) and Cyanobacteria were the most abundant among nitrogen fixers. Overall, these results suggest an epilithic community more metabolically diverse than previously thought and with the potential to carry out an active role in the biogeochemical nitrogen cycling of high-altitude ecosystems. Measurements of activity rates should be however carried out to substantiate and further explore these findings.     

Salinity Impact on Bacterial Community Composition in Five High-Altitude Lakes from the Tibetan Plateau,Western China

The influence of salinity and geographical distance on bacterial community composition (BCC) in five freshwater, oligosaline or polysaline lakes located at altitudes higher than 4400 m on the central and southern Tibetan Plateau were investigated using the 16S rRNA gene clone library approach together with multivariate analysis of environmental variables. A total of 10 clone libraries were constructed with two libraries in each lake, one in the epilimnion and the other in the hypolimnion. Geographical distance was not found to impact BCC significantly, but salinity, chl a and lake hydraulic retention time were significant factors influencing the BCC. Bacteria in lakes located on the central and southern Plateau owned the same community composition as that observed from the eastern Tibetan lakes. They were both predominated by Bacteroidetes and Cyanobacteria, had low taxon richness, and similar typical freshwater clusters and distributed characteristics. Supplemental materials are available for this article. Go to the publisher's online edition of Geomicrobiology Journal to view the supplemental file.     

Ecosystem Linkages Between Lakes and the Surrounding Terrestrial Landscape in Northeast Iceland

Despite a recent emphasis on understanding cross-habitat interactions, few studies have examined the ecological linkages between lakes and surrounding terrestrial habitats. The current paradigm of land–lake interactions is typically unidirectional: the view is that nutrients and matter are transported downslope from the surrounding watershed to their ultimate lacustrine destination. Emergent aquatic insects, which spend their larval stages in lake sediments and emerge as adults to mate over land, can act as vectors of material, energy and nutrients from aquatic to terrestrial habitats. In this study, we document a gradient of midge (Diptera: Chironomidae) infall rates into terrestrial habitats (measured as g dw midges m^?2 d^?1) surrounding eight lakes in Northern Iceland (≈66°N latitude). Lakes ranged from having virtually no midge infall (for example, Helluvaðstjörn, 0.03 g m^?2 d^?1) to extreme levels (for example, Mývatn, 19 g m^?2 d^?1) with abundances of midges decreasing logarithmically with distance from shore. Annual midge input rates are estimated as high as 1200–2500 kg midges ha^?1 y^?1. As midges are approximately 9.2% total N, this can result in a significant fertilization effect of terrestrial habitats with consequences for plant quality and community structure. In addition, we used naturally-occurring δ¹³C and δ¹⁵N isotopes to examine food web structure and diet sources of terrestrial arthropod consumers surrounding lakes with differing amounts of midge input. Terrestrial arthropods showed increased utilization of aquatic-derived (that is, midge) C relative to terrestrial sources as midge infall increased. This pattern was particularly pronounced for predators, such as spiders and opiliones, and some detritivores (Collembola). These findings suggest that, despite being largely ignored, aquatic-to-terrestrial linkages can be large and midges can fuel terrestrial communities by directly serving as resources for predators and decomposers.     

A Set of STS Assays Targeting the Chromosome 22 Physical Framework Markers

The widespread use of the sequence-tagged site (STS) as a quick, efficient, and reproducible assay for comparing physical and genetic map information promises to facilitate greatly long-range goals of time mapping of the human genome. We have designed 21 STS assays for loci on human chromosome 22. These assays primarily tag the physical framework markers of the long arm of 22, but additional assays have been designed from known genes and loci in the neurofibromatosis 2 (NF2) region. The availability of these assays will make these loci available to the research community without physical transfer of materials and will serve as start points for further efforts to physically map chromosome 22 with yeast artificial chromosome clones.     

A Proposed Framework for the Identification of Habitat Utilisation Patterns of Macrophytes in River Po Catchment Basin Lakes (Italy)

The main aim of this study, which is based on cover-abundance values of 20 species of floating-leaved and submersed macrophytes collected in 18 lakes located within the River Po catchment basin (Italy), is to investigate the relationships between lake-scale environmental features (including morphology, hydrology, trophic state and water quality variables) and the changes in species composition and species richness in macrophyte communities. The findings reveal that the main changes in community composition of the pondweed communities, identified by principal component analysis, could be effectively explained by a newly introduced morpho-hydrological parameter (the theoretical laminar water renewal rate – R _L) and by the trophic state of the lakes, expressed as Carlson’s trophic state index (TSI). The results of the multivariate analyses performed also show that the grouping of species is strictly related to growth-form traits. In particular, floating-leaved and submerged macrophytes appeared mutually exclusive in dominating different habitat types defined on the basis of the R _L–TSI framework. An increasing trend in species richness was also observed in relation to R _L. The possibility of using the bivariate R _L–TSI framework for the identification of habitat utilisation patterns by single species was also investigated, and cover-abundance prediction maps based on the R _L–TSI framework were produced for several macrophyte species. Observations in another system characterised by high spatial heterogeneity for hydrological and trophic conditions, support the predictions in terms of growth-form prevalence, species richness and single species cover-abundance (where available), and also suggest a more refined application of the proposed approach.     

A Rationale for the Subclassification of Biogenic Meromictic Lakes

An extension of Walker and Likens' (1974). scheme for the classification of meromictic lakes of the world has been based in part upon the mutual incompatibility of certain common chemical species and their generation within the monimolimnia of biogenic meromictic lakes.     

A Framework to Assess Biogeochemical Response to Ecosystem Disturbance Using Nutrient Partitioning Ratios

Disturbances affect almost all terrestrial ecosystems, but it has been difficult to identify general principles regarding these influences. To improve our understanding of the long-term consequences of disturbance on terrestrial ecosystems, we present a conceptual framework that analyzes disturbances by their biogeochemical impacts. We posit that the ratio of soil and plant nutrient stocks in mature ecosystems represents a characteristic site property. Focusing on nitrogen (N), we hypothesize that this partitioning ratio (soil N: plant N) will undergo a predictable trajectory after disturbance. We investigate the nature of this partitioning ratio with three approaches: (1) nutrient stock data from forested ecosystems in North America, (2) a process-based ecosystem model, and (3) conceptual shifts in site nutrient availability with altered disturbance frequency. Partitioning ratios could be applied to a variety of ecosystems and successional states, allowing for improved temporal scaling of disturbance events. The generally short-term empirical evidence for recovery trajectories of nutrient stocks and partitioning ratios suggests two areas for future research. First, we need to recognize and quantify how disturbance effects can be accreting or depleting, depending on whether their net effect is to increase or decrease ecosystem nutrient stocks. Second, we need to test how altered disturbance frequencies from the present state may be constructive or destructive in their effects on biogeochemical cycling and nutrient availability. Long-term studies, with repeated sampling of soils and vegetation, will be essential in further developing this framework of biogeochemical response to disturbance.     

一种单个胚胎的DNA模板制备方法

建立了一种简单处理单个卵子和早期胚胎制备DNA模板的方法——KOH/DTT-Triton X裂解法,并与TE-蛋白酶K法比较了PCR扩增效率。结果,采用KOH/DTT-Triton X裂解法处理单个卵子或2-细胞胚、8-细胞胚、桑椹胚、囊胚后,作为DNA模板直接进行PCR扩增线粒体DNA片段,3对引物的PCR扩增总成功率为100%（70/70）,而TE-蛋白酶K法处理的单个卵子的PCR扩增总成功率为92.9%（65/70）,二者差异显著（P<0.05）。但两种方法所制备模板的PCR假阳性率均为0。实验设计的KOH/DTT-Triton X裂解法是一种有效的单个早期胚胎的DNA模板制备方法,经一次PCR扩增即能获得清晰的目的DNA条带,能够满足早期胚胎遗传物质检测的需要。     

High Abundances of Potentially Active Ammonia-Oxidizing Bacteria and Archaea in Oligotrophic,High-Altitude Lakes of the Sierra Nevada,California, USA

Nitrification plays a central role in the nitrogen cycle by determining the oxidation state of nitrogen and its subsequent bioavailability and cycling. However, relatively little is known about the underlying ecology of the microbial communities that carry out nitrification in freshwater ecosystems—and particularly within high-altitude oligotrophic lakes, where nitrogen is frequently a limiting nutrient. We quantified ammonia-oxidizing archaea (AOA) and bacteria (AOB) in 9 high-altitude lakes (2289–3160 m) in the Sierra Nevada, California, USA, in relation to spatial and biogeochemical data. Based on their ammonia monooxygenase (amoA) genes, AOB and AOA were frequently detected. AOB were present in 88% of samples and were more abundant than AOA in all samples. Both groups showed >100 fold variation in abundance between different lakes, and were also variable through time within individual lakes. Nutrient concentrations (ammonium, nitrite, nitrate, and phosphate) were generally low but also varied across and within lakes, suggestive of active internal nutrient cycling; AOB abundance was significantly correlated with phosphate (r² = 0.32, p<0.1), whereas AOA abundance was inversely correlated with lake elevation (r² = 0.43, p<0.05). We also measured low rates of ammonia oxidation—indicating that AOB, AOA, or both, may be biogeochemically active in these oligotrophic ecosystems. Our data indicate that dynamic populations of AOB and AOA are found in oligotrophic, high-altitude, freshwater lakes.     

Ecosystem integrity in the Great Lakes Basin: an historical sketch of ideas and actions

The concepts of ecosystem and integrity effectively entered the binational political arena in the Great Lakes Basin in the early 1970's. They were brought together explicitly in the statement of the purpose of the 1978 Great Lakes Water Quality Agreement. The 1987 Protocol to that Agreement has helped to specify the practical meaning of ecosystem integrity of the Great Lakes Basin. The proceedings of a binational workshop in 1988, titled An Ecosystem Approach to the Integrity of the Great Lakes Basin in Turbulent Times, helped to clarify the conceptual meaning. An Ecosystem Charter for the Great Lakes-St. Lawrence River Basin was proposed in 1989 to help achieve more thorough implementation of the commitment to ecosystem integrity. The evolutionary emergence of this political concept and related practice is described in the paper.List of abbreviations used in the text CUSIS Canada-U.S. Inter-University Seminar Series - LAA Environmental Lakes Area - EPA Environmental Protection Agency - GLBC Great Lakes Basin Commission - GLC Great Lakes Commission - GLER Great Lakes Ecosystem Rehabilitation - GLFC Great Lakes Fishery Commission - GLSAB Great Lakes Science Advisory Board - GLU Great Lakes United - GLWQA Great Lakes Water Quality Agreement - HASP Heritage Area Security Plan - IBP International Biological Program - IJC International Joint Commission - IZAP Inundation Zone Adaptive Plan - LAMP Lake-wide Management Plan - LLRS Lake Levels Reference Study - MAB Man and the Biosphere program - NEPA National Environmental Policy Act - PLUARG Pollution from Land Use Activities Reference Group - RAP Remedial Action Plan - SCOL Salmonid Communities in Oligotrophic Lakes - SGLFMP Strategic Great Lakes Fishery Management Plan - SPOF Strategic Plan for Ontario Fisheries - UNESCO United Nations Educational, Scientific and Cultural Organization Aquatic Ecosystem Health and Management Society. Symposium at the University of Waterloo, July 23–25, 1990.     

Integrated Modeling Framework for Manufacturing Systems: A Unified Representation of the Physical Process and Information System

The task of process modeling in a manufacturing environment centers around controlling and improving the flow of materials. This flow comprises a complicated web of control and physical systems. Despite a variety of manufacturing system modeling approaches, more rigorous process modeling is required. This paper presents an integrated modeling framework for manufacturing systems (IMF-M). Conceptual modeling of physical materials flow supported by a graphical representation facilitates improvement of operations in manufacturing environments. A declarative and executable representation of control information systems helps to improve information management by managing a variety of information models with improved readability and reusability. A unified representation of the physical process and information system provides a common modeling milieu in which efforts can be coordinated among several groups working in the different domains of scheduling, shop floor and logistics control, and information system. Since the framework helps adapt to the changes of the physical process and information system affecting each other in a consistent manner, the modeling output enhances integration of the manufacturing system.     

Low Taxon Richness of Bacterioplankton in High-Altitude Lakes of the Eastern Tibetan Plateau,with a Predominance of Bacteroidetes and Synechococcus spp.

Plankton samples were collected from six remote freshwater and saline lakes located at altitudes of 3,204 to 4,718 m and 1,000 km apart within an area of ca. 1 million km² on the eastern Tibetan Plateau to comparatively assess how environmental factors influence the diversity of bacterial communities in high-altitude lakes. The composition of the bacterioplankton was investigated by analysis of large clone libraries of 16S rRNA genes. Comparison of bacterioplankton diversities estimated for the six Tibetan lakes with reference data previously published for lakes located at lower altitudes indicated relatively low taxon richness in the Tibetan lakes. The estimated average taxon richness in the four Tibetan freshwater lakes was only one-fifth of the average taxon richness estimated for seven low-altitude reference lakes. This cannot be explained by low coverage of communities in the Tibetan lakes by the established libraries or by differences in habitat size. Furthermore, a comparison of the taxonomic compositions of bacterioplankton across the six Tibetan lakes revealed low overlap between their community compositions. About 70.9% of the operational taxonomic units (99% similarity) were specific to single lakes, and a relatively high percentage (11%) of sequences were <95% similar to publicly deposited sequences of cultured or uncultured bacteria. This beta diversity was explained by differences in salinity between lakes rather than by distance effects. Another characteristic of the investigated lakes was the predominance of Cyanobacteria (Synechococcus) and Bacteroidetes. These features of bacterioplankton diversity may reflect specific adaptation of various lineages to the environmental conditions in these high-altitude lakes.Bacterioplankton is a major component of aquatic ecosystems (13). The advent of molecular techniques during the past 2 decades has advanced our knowledge of the diversity and ecology of bacterioplankton in various aquatic habitats (7, 14, 19, 20, 39, 63, 64, 67). Based on comparative analyses of bacterial 16S rRNA sequences obtained from diverse freshwater habitats, typical freshwater bacterial clusters have been proposed (67), and this list of clusters was subsequently expanded (e.g., 2, 15, 23, 57). Many of these freshwater bacterial clusters appeared to be widely distributed in lakes with different ecological characteristics and in different geographic regions (34, 38, 44, 57, 67). However, most of the knowledge about freshwater bacterioplankton diversity originated from investigations of low-altitude lake systems. Differences in elevation result in pronounced differences in environmental conditions in lakes (59). Lakes at high altitudes are often characterized by oligotrophy, low temperature, low productivity, simple food web structure, and strong UV radiation in surface water layers. All these factors have been shown to strongly influence bacterial community composition and bacterial taxon richness (e.g., 25, 32, 33, 35, 48, 58, 60). These in situ environmental conditions, which change with the elevation, may result in a change in the bacterioplankton community and taxon richness at high elevations. Since lake ecosystems at high altitude are quite sensitive to the impacts of climate change, i.e., global warming, and these rarely explored lakes may harbor new microbial species, our knowledge of the bacterial diversity in high-altitude lakes is also crucial to species protection and ecosystem conservation.In this study, sequence analysis of large 16S rRNA gene clone libraries was applied in order to obtain deep insights into the phylogenetic diversity of bacterioplankton in six permanent high altitude lakes located ca. 1,000 km apart within an area of ca. 1 million km² on the eastern Tibetan Plateau (Fig. ​(Fig.1).1). We selected these lakes because (i) they are permanent lakes that have existed for thousands of years and lack direct anthropogenic influences (66); (ii) they posses typical characteristics of high-altitude lakes, like low nutrient concentration, low temperature, low primary productivity, and transparent water; (iii) they are located distant from each other in three different regions of the plateau; and (iv) they cover gradients in salinity and chemical composition that are typical of the ecologically broad spectrum of Tibetan lakes (62). By performing interlake comparisons across these Tibetan lakes and comparisons with the available information on bacterioplankton diversity in low-altitude lakes, we aimed to (i) evaluate the taxon richness of bacterioplankton in lakes in relation to the indirect influence of elevation via the environmental conditions, (ii) test the importance of spatial and local environmental factors for bacterioplankton community composition (BCC) in these remote high-altitude lakes, and (iii) characterize the phylogenetic diversity of bacterioplankton and assess the community features in these remote ecosystems.Open in a separate windowFIG. 1.Map of central Tibet indicating the locations of the investigated lakes. 1, Lake Qinghai; 2, Lake Zhaling; 3, Lake Tuosuhai; 4, Lake E''ling; 5, Lake Xinxinhai; 6, Lake Namucuo. (Adapted from reference 61a, with kind permission from Springer Science+Business Media.)     

Small Changes in Climate Can Profoundly Alter the Dynamics and Ecosystem Services of Tropical Crater Lakes

African tropical lakes provide vital ecosystem services including food and water to some of the fastest growing human populations, yet they are among the most understudied ecosystems in the world. The consequences of climate change and other stressors on the tropical lakes of Africa have been informed by long-term analyses, but these studies have largely focused on the massive Great Rift Valley lakes. Our objective was to evaluate how recent climate change has altered the functioning and services of smaller tropical lakes, which are far more abundant on the landscape. Based on a paired analysis of 20 years of high-resolution water column data and a paleolimnological record from a small crater lake in western Uganda, we present evidence that even a modest warming of the air (∼0.9°C increase over 20 years) and changes in the timing and intensity of rainfall can have significant consequences on the dynamics of this common tropical lake type. For example, we observed a significant nonlinear increase (R²_adj = 0.23, e.d.f. = 7, p<0.0001) in thermal stability over the past 20 years. This resulted in the expansion of anoxic waters and consequent deterioration of fish habitat and appears to have abated primary production; processes that may impair ecosystem services for a vulnerable human population. This study on a system representative of small tropical crater lakes highlights the far-reaching effects of global climatic change on tropical waters. Increased research efforts into tropical aquatic ecosystem health and the development of sound management practices are necessary in order to strengthen adaptive capabilities in tropical regions.