A meta-taxonomic investigation of the prokaryotic diversity of water bodies impacted by acid mine drainage from the São Domingos mine in southern Portugal

Extremophiles - The prokaryotic communities of water bodies contaminated by acid mine drainage from the São Domingos mining area in southern Portugal were analyzed using a meta-taxonomics...     

Metal hyperaccumulating Brassicaceae from the ultramafic area of Yahyalı in Kayseri province,Turkey

Many of the plants found in serpentine areas are endemics and they may accumulate Ni at high concentration. High accumulation of Cr is rare, or in some views, never properly demonstrated. Generally, a very small proportion of any serpentine flora shows high accumulation of Ni, in some serpentine areas Ni accumulators are completely absent. There are approximately 570 hyperaccumulator plant species found on earth, 450 of them are Ni hyperaccumulators. A few of the Ni accumulators have potential for phytoremediation or phytomining. In the present study, 19 different Brassicaceae members growing in serpentine habitats in the district of Yahyal?, Kayseri province, Turkey viz., members of genera Aethionema, Alyssum, Arabis, Heldreichia, Hesperis, Iberis, Isatis, Microthlaspi, Odontarrhena, Pseudosempervivum and Thlaspi were investigated. Nickel concentrations in the soil and underground and aboveground parts of plants were determined by using ICP-OES. It was observed that Ni concentrations of seven taxa (Odontarrhena muralis, O. oxycarpa, Isatis cappadocica subsp. cappadocica, Microthlaspi perfoliatum, Pseudosempervivum sempervivum, Thlaspi triangulare, Thlaspi rosulare) reach the threshold criterion of 1,000 mg kg^?1 for Ni hyperaccumulation. In this study Ni concentrations in aboveground tissues of I. cappadocica subsp. cappadocica are determined as 5,587 mg kg^?1 (in dry weight). Accordingly, it is suggested that this taxon be added to the list of Ni hyperaccumulator plants.     

Records and palaeoenvironmental conditions of Early Miocene scleractinian corals from the Fırat formation (Diyarbakır,Turkey)

Miocene scleractinian corals were documented for the first time in the Fırat Formation of Sarıca village, Eğil district of Diyarbakır, SE Turkey. The fauna consists of four hermatypic species belonging to three families: Diploastrea taurinensis (d’Achiardi, 1868), Tarbellastraea reussiana (Milne-Edwards and Haime, 1850), Echinopora gemmacea (Lamarck, 1816) and Montastraea pelouaensis (Chevalier, 1954). The morphospecies described here are typical of the early Miocene (Aquitanian-Burdigalian) and show that the Fırat Formation coral community was composed of shallow and subtropical reefs of Mediterranean Tethys palaeobiogeographical affinity. The examined species are reef components found in tropical and subtropical oceans, as are the majority of zooxanthellae. The species were upper photic zone related, had massive colonial growth morphology, and lived in a shallow tropical-subtropical marine palaeoenvironment at a depth of up to 50 m. They grew on hard ground, clean water, and normal salinity and required a minimum seawater temperature of 18 ̊C; however, they were most abundant at water temperatures ranging from 22 to 26 ̊C in high-moderate water energy. Consequently, this fossil assemblage will not only improve our knowledge of scleractinian coral diversity and morphological variation in SE Turkey but will also provide an important background for future studies of coral taxonomy, diversity and biogeography of the region.     

Oxynoemacheilus cemali,a new species of stone loach (Teleostei: Nemacheilidae) from the Çoruh River drainage,Turkey

Oxynoemacheilus cemali sp. nov. is described from the Çoruh River drainage in the eastern Black Sea basin. One molecular marker (coI), 25 morphometric and four meristic characters were analysed. Oxynoemacheilus cemali is distinguished from O. kosswigi, O. banarescui, O. samanticus and O. angorae in the Black Sea basin by having a suborbital groove in males, an axillary lobe at the pelvic-fin base, no dorsal adipose crest on the caudal peduncle, a slightly-forked caudal fin and 7–15 dark grey dorsal saddles. Morever, Oxynoemacheilus cemali is distinguished by commonly having 9–15 irregularly-shaped dark-grey bars on the flank posterior to the dorsal-fin origin or, rarely having a mottled pattern or 4–6 irregularly shaped dark-grey bars on the flank posterior to the dorsal-fin origin. Oxynoemacheilus cemali is also distinguished from the closely related species O. araxensis and O. cyri, distributed outside the Black Sea basin, by having 15 and 31 diagnostic nucleotide substitutions in the coI barcode region, respectively.     

Reproducing Authigenic Carbonate Precipitation in the Hypersaline Lake Acıgöl (Turkey) with Microbial Cultures

In the present study, laboratory precipitation experiments using similar water chemistry and two different bacterial cultures from Lake Ac?göl sediments, a hypersaline lake in Turkey, were performed to reproduce mineral assemblages similar to those found in the lake. Two different bacterial cultures induce various calcium/magnesium carbonates precipitation under all the experimental conditions (solid vs. liquid): Hydromagnesite, dypingite, huntite, monohydrocalcite, and aragonite. The geochemical program PHREEQC was used to calculate the mineral saturation indexes in the cultures and in lake water. Carbonate mineral assemblages identified in the experiments seem to be independent of the type of microorganisms but rather controlled by the chemical composition and physical conditions of the media. The relative amounts of monohydrocalcite, hydromagnesite, and dypingite are controlled by varying sulfate concentration from 0 to 56 mM. This demonstrates a kinetic effect that could similarly affect the mineral assemblage in the lake. Also the spherical morphology of hydromagnesite points to growth of these minerals under partial inhibition in the brine under high concentrations of ions and organic polymers produced by the microbial communities. As reproduced by the culture experiments, the authigenic carbonate mineral assemblage of Lake Ac?göl most likely results from interplay of ionic composition of the brine and microbial effects.     

Turonian–Santonian radiolarians and planktonic foraminifers of the Upper Cretaceous sequences between Trabzon and Giresun areas in the Eastern Pontides,NE Turkey

In the “Eastern Pontides” (NE Turkey), the intense volcanic activity accompanying carbonate-siliceous sedimentation during the Late Cretaceous period ensured the occurrence of thick volcano-sedimentary sequences. Seventy-one radiolarian species belonging to 26 genera were identified from five stratigraphic sections of the Upper Cretaceous sequences between Trabzon and Giresun areas in NE Turkey. These species were obtained from the lower Turonian–lower Coniacian strata of the Çe?meler Formation, the Coniacian–lower Santonian strata of the Elmal? Dere Formation and the upper Santonian strata of the Ça?layan Formation. Coniacian–Campanian fauna, consisting of planktonic foraminifera Hedbergella, Marginotruncana, Globotruncana, Whiteinella and biserial heterohelicids as well as radiolarians, was recovered from the red pelagic limestones of the Elmal? Dere Formation known as marker horizon.     

Qurliqnoria (Bovidae,Mammalia) from the Upper Miocene of Çorakyerler (Central Anatolia,Turkey) and its biogeographic implications

New bovid material from the Upper Miocene site of Çorakyerler (Çankırı basin, Anatolia, Turkey) is described and compared here. The described taxon is identified as a representative of the stem caprine genus Qurliqnoria, previously known from the peri-Tibetan area exclusively. The stronger horn-core divergence, weaker anterior keel, smoother horn-core surface, stronger lateral horn-core curvature, stronger and thicker interfrontal suture, less flexed and less pneumatized frontals, and smaller supraorbital foramina differentiate the Çorakyerler Qurliqnoria from the type and only known species of the genus, Q. cheni from China, and demand the erection of a new species, Qurliqnoria chorakensis n. sp. A review of other late Miocene bovid records allows the recognition of Qurliqnoria in Sinap Tepe (Turkey) and Platania (Greece), suggesting a westward propagation of the genus during the Vallesian.     

Dating and dendroprovenancing of the timbers used in Yenikapı historical jetty (İstanbul,Turkey)

In 2016, the Directorate of İstanbul Archaeology Museums unearthed an extensive jetty within the eastern portion of the Byzantine harbor excavated at Yenikapı, İstanbul. The purpose of the paper is to present the results obtained from the dating and dendroprovenancing of the wooden timbers from this historical jetty. A total of 145 oak and fir samples were collected for dating. The cutting dates of the oak timbers were determined to be from AD 1762-1763, which has also been confirmed by archaeological documents. The best statistical values (Gleichläufigkeit value 76%, TV_BP 10.0 and CDI 82) were obtained using the oak chronology for Vezneciler from the Asian side of the Bosporus, which represents construction phases dating to AD 1762-1763. The highest statistical matches for the oak tree-ring series from both Yenikapı and Vezneciler were obtained using reference chronologies from northern Greece and Kosovo. Three site chronologies from the forests of Bolu, Karabük and Kastamonu were used to date the fir samples, and the cutting date was determined to be AD 1906. The best statistical results were obtained from the site chronology for Kastamonu (Gleichläufigkeit value 72%, TV_BP 10.3 and CDI 79). Due to the significant correlation with this site chronology, the origin of the fir samples may be from the forests of Kastamonu, which is the nearest fir forest along the Black Sea. Because roads and railways were not common during this period, the fir timbers may have been transported via the Black Sea to Yenikapı located near the Marmara Coast. We can conclude from this evidence that construction near the Byzantine harbor continued to utilize imported timbers into the Ottoman period.     

Dissemination of heavy-metal contamination in surface sediments of the Uzunçayır Dam Lake,Tunceli, Turkey

The objective of this study was to determine the heavy-metal concentrations (Cu, Pb, Zn, Ni, Mn, Fe, As, Cd, Cr, and Hg), evaluate the pollution levels, and determine the concentration of chlorophyll-a and organic carbon in the surface sediments of the Uzunçay?r Dam Lake, Tunceli, Turkey, between 2015 and 2016. In order to evaluate the effect of the pollution level in the study area, the contamination factor (CF), enrichment factor, potential ecological risk index, and pollution load index were used. The concentrations of the studied heavy metals were ordered as follows: Fe > Mn > Ni > Cr > Zn > Cu > Pb > As > Cd > Hg. The highest CF value was found for the Ni element among the studied heavy metals in the Dam Lake. Moreover, the highest CF mean value was found for the As contamination level. According to the toxicity analyses in the study area, the potential toxic effect of sediments was not at a very serious level.     

Isolation and characterization of long-chain alkane–degrading Acinetobacter sp. BT1A from oil-contaminated soil in Diyarbakır,in the Southeast of Turkey

A strain of long-chain alkane–degrading bacteria, BT1A, was isolated from oil-contaminated soil in Diyarbak?r, in the southeast of Turkey. Morphological, biochemical, and physiological characterization and 16S rRNA gene sequence analysis showed that the strain BT1A was a member of Acinetobacter genus, and it was found to be closely related to Acinetobacter baumannii. The strain BT1A was able to utilize crude petroleum as carbon and energy sources in order to grow. Among the aliphatic hydrocarbons, growth was observed only in the medium containing long-chain alkanes (tridecane, pentadecane, and hexadecane) and squalene. Hexadecane was the most preferred hydrocarbon among the long-chain alkanes. Gas chromatography–mass spectrometry (GC-MS) analysis showed that BT1A degraded 83% of n-alkanes of 1% crude oil in 7 days. The present study indicates that the isolated strain can well be used for biodegradation of hydrocarbons in oil-contaminated sites.     

Rugose corals from the upper Viséan (Carboniferous) of the Jerada Massif (NE Morocco): taxonomy,biostratigraphy, facies and palaeobiogeography

The Viséan succession of the Jerada Massif contains a relatively diverse rugose coral fauna, which comprises 12 genera. Only two of these (Siphonodendron and Lithostrotion) are reported to include more than one species. Most taxa show distinctive facies dependencies. Small solitary corals are found in shaly environments of the Oued Es-Sassi Formation. On the northern flank a coral patch reef formed on an oolitic shoal in the Koudiat Es-Senn Formation. Its core mainly consists of Lithostrotion vorticale colonies, whereas in its surroundings literally hundreds of specimens of Siphonophyllia samsonensis occur. Associated with these dominant taxa occur colonial and further large solitary taxa (Palaeosmilia, Dibunophyllum). Tizraia and Pareynia are restricted to microbial-dominated buildup facies. Their presence might be strongly controlled by the development of this buildup type, because further occurrences in Algeria, Morocco, and Belgium are all in the same facies. The coral fauna at Jerada is a typical Late Viséan assemblage for the Western European Province. The Eastern Moroccan Meseta may be an important pathway within the province for the connection between the Central Saharan basins and NW Europe. The biostratigraphic ages of the coral fauna partly contradict ages based on carbonate microfossils; the coral ages are slightly older and typical Brigantian coral taxa are absent.     

Polygynandry in a red fox population: implications for the evolution of group living in canids?

Canid social groups are typically thought to consist of extendedfamilies, that is, a dominant breeding pair and related nonbreedingsubordinates, that principally obtain indirect fitness benefitsfrom helping to raise the offspring of the dominant pair. Consequently,the monogamous pair has been viewed as the basic fundamentalunit of canid social organization. However, there have beenfew genetic studies that have tested this assumption. We analyzedthe parentage of red foxes (Vulpes vulpes) in a high-density(19.6–27.7 adult foxes/km²) population in Bristol, UK,to determine (1) whether groups typically produced a singlelitter of cubs annually and (2) whether male and female foxesexhibited monogamous mating strategies. Social monogamy (theproduction of one litter in a social group) was observed orassumed in 54% of breeding attempts (N = 13 group-years). However,polyandrous and polygynous patterns of mating were common. Multiplepaternity was confirmed in 38% of litters (N = 16) containingoffspring with resolved maternity and paternity (N = 30 cubs);when including cubs with unresolved paternity (N = 20), multiple-paternitymay have occurred in 69% of litters. Litters were sired by anaverage of 1.6 identified males (range = 1–4); when includingcubs with unresolved paternity, litters may have been siredby up to seven males. Only 20% (6/30) of cubs with resolvedmaternity and paternity were sired by males within the socialgroup. Within groups, dominant females did not breed with subordinatemales; dominant males did breed with subordinate females. Dominantand subordinate females both produced cubs with dominant andsubordinate males from other social groups. Mean adult relatednessin groups typically ranged from 0.15–0.35, indicativeof second-order rather than first-order relatives.     

Connexin 26 (GJB2) mutations in the Turkish population: implications for the origin and high frequency of the 35delG mutation in Caucasians

Mutations in the Connexin 26 (GJB2/Cx26) gene are responsible for more than half of all cases of prelingual non-syndromic recessive deafness in many Caucasian populations. To determine the importance of Cx26 mutations as a cause of deafness in Turks we screened 11 families with prelingual non-syndromic deafness, seven (64%) of which were found to carry the 35delG mutation. We subsequently screened 674 Turkish subjects with no known hearing loss and found twelve 35delG heterozygotes (1.78%; 95% confidence interval: 0.9%-3%) but no examples of the 167delT mutation. To search for possible founder effects, we typed chromosomes carrying the 35delG mutation for closely linked polymorphic markers in samples from Turkey and United States and compared the allele frequencies with those of hearing subjects. The data showed a modest degree of disequilibrium in both populations. Analyses of two pedigrees from Turkey demonstrated both conserved and different haplotypes, suggesting possible founder effects and multiple origins of the 35delG mutation.     

A new species of the genus Megasis Guenée, 1845 from Turkey (Lepidoptera: Pyralidae)

A new species in the family Pyralidae is described: Megasis kocaki sp. n., of which the adult, head and the male genitalia are illustrated. The new species is compared with the closely allied Megasis hyrcanella Ragonot, 1893.

http://www.zoobank.org/urn:lsid:zoobank.org:pub:0136DD7F-0E91-4114-9B3B-A42E6114A985     

Hemiodus bimaculatus,a new species of Hemiodontidae from the Rio Tapajós drainage,Brazil (Ostariophysi: Characiformes)

Hemiodus bimaculatus sp. nov., is described from tributaries of the Rio Juruena and Rio Teles Pires in the upper Rio Tapajós basin. The new species is diagnosed from most congeners, except Hemiodus jatuarana, by having a conspicuous circular or horizontally elongate dark blotch on the caudal peduncle (v. inconspicuous in H. iratapuru and absent in the other species). The new species differs from H. jatuarana by having a round midlateral spot on the flank (v. absent in H. jatuarana), 98–121 perforated scales in the lateral line (v. 66–72 in H. jatuarana), 23–28 scale series above and 14–19 below lateral line (v. 12–13 above and 6–7 below in H. jatuarana). Hemiodus bimaculatus is hypothesised to be related to species of the H. microlepis group, from which it also differs by having 11–25 epibranchial (v. 26–34 in H. argenteus, 29–39 in H. microlepis, 21–42 in H. orthonops and 27–35 in H. parnaguae) and 18–31 ceratobranchial (v. 38–50 in H. argenteus, 43–58 in H. microlepis, 32–52 in H. orthonops and 34–48 in H. parnaguae) gill rakers in the first arch.     

Late Triassic and Lower Jurassic Foraminifera of the carbonate platform of the Beyaz Aladağ Group (Eastern Taurus,Turkey): New stratigraphic implications

Foraminifera have proven to be reliable biostratigraphic indicators. Accordingly, Triassic and Early Jurassic benthic Foraminifera allow us to define a biostratigraphic zonation within the carbonate platform of Kayseri (Yahyal?), Göksun (Kahramanmara?) and Sivas (Delikta?) regions in the Eastern Taurus (Ceviz, Alada?, Kaman and Felfan Mountains). Seven new stratigraphic sections are described in detail and the first precise inventory and illustration of the benthic foraminifer assemblages from the Triassic successions are presented over a large geographic area. The stratigraphic and palaeontological features of the Lower Mesozoic carbonate units of these mountains include several synchronous transgressive–regressive events that suggest continuity of the Lower Mesozoic environments over a large parautochthonous Taurus zone. Palaeogeographic considerations about the Eastern Taurus carbonates are given, evidencing three stages of development underwent by the studied area: 1) a stable continental margin from Lower Triassic to Lower Cretaceous; 2) a dismantling of the continental margin and first emplacement of ophiolites in the Upper Cretaceous; and 3) a deformation of the continental margin and emplacement of the Peridotite Nappe in the uppermost Cretaceous (Maastrichtian).