Large‐scale patterns in summer diffusive CH4 fluxes across boreal lakes,and contribution to diffusive C emissions

Lakes are a major component of boreal landscapes, and whereas lake CO₂ emissions are recognized as a major component of regional C budgets, there is still much uncertainty associated to lake CH₄ fluxes. Here, we present a large‐scale study of the magnitude and regulation of boreal lake summer diffusive CH₄ fluxes, and their contribution to total lake carbon (C) emissions, based on in situ measurements of concentration and fluxes of CH₄ and CO₂ in 224 lakes across a wide range of lake type and environmental gradients in Québec. The diffusive CH₄ flux was highly variable (mean 11.6 ± 26.4 SD mg m^?2 d^?1), and it was positively correlated with temperature and lake nutrient status, and negatively correlated with lake area and colored dissolved organic matter (CDOM). The relationship between CH₄ and CO₂ concentrations fluxes was weak, suggesting major differences in their respective sources and/or regulation. For example, increasing water temperature leads to higher CH₄ flux but does not significantly affect CO₂ flux, whereas increasing CDOM concentration leads to higher CO₂ flux but lower CH₄ flux. CH₄ contributed to 8 ± 23% to the total lake C emissions (CH₄ + CO₂), but 18 ± 25% to the total flux in terms of atmospheric warming potential, expressed as CO₂‐equivalents. The incorporation of ebullition and plant‐mediated CH₄ fluxes would further increase the importance of lake CH₄. The average Q₁₀ of CH₄ flux was 3.7, once other covarying factors were accounted for, but this apparent Q₁₀ varied with lake morphometry and was higher for shallow lakes. We conclude that global climate change and the resulting shifts in temperature will strongly influence lake CH₄ fluxes across the boreal biome, but these climate effects may be altered by regional patterns in lake morphometry, nutrient status, and browning.     

State of the science in reconciling top‐down and bottom‐up approaches for terrestrial CO2 budget

Robust estimates of CO₂ budget, CO₂ exchanged between the atmosphere and terrestrial biosphere, are necessary to better understand the role of the terrestrial biosphere in mitigating anthropogenic CO₂ emissions. Over the past decade, this field of research has advanced through understanding of the differences and similarities of two fundamentally different approaches: “top‐down” atmospheric inversions and “bottom‐up” biosphere models. Since the first studies were undertaken, these approaches have shown an increasing level of agreement, but disagreements in some regions still persist, in part because they do not estimate the same quantity of atmosphere–biosphere CO₂ exchange. Here, we conducted a thorough comparison of CO₂ budgets at multiple scales and from multiple methods to assess the current state of the science in estimating CO₂ budgets. Our set of atmospheric inversions and biosphere models, which were adjusted for a consistent flux definition, showed a high level of agreement for global and hemispheric CO₂ budgets in the 2000s. Regionally, improved agreement in CO₂ budgets was notable for North America and Southeast Asia. However, large gaps between the two methods remained in East Asia and South America. In other regions, Europe, boreal Asia, Africa, South Asia, and Oceania, it was difficult to determine whether those regions act as a net sink or source because of the large spread in estimates from atmospheric inversions. These results highlight two research directions to improve the robustness of CO₂ budgets: (a) to increase representation of processes in biosphere models that could contribute to fill the budget gaps, such as forest regrowth and forest degradation; and (b) to reduce sink–source compensation between regions (dipoles) in atmospheric inversion so that their estimates become more comparable. Advancements on both research areas will increase the level of agreement between the top‐down and bottom‐up approaches and yield more robust knowledge of regional CO₂ budgets.     

Linking forest fires to lake metabolism and carbon dioxide emissions in the boreal region of Northern Québec

Natural fires annually decimate up to 1% of the forested area in the boreal region of Québec, and represent a major structuring force in the region, creating a mosaic of watersheds characterized by large variations in vegetation structure and composition. Here, we investigate the possible connections between this fire‐induced watershed heterogeneity and lake metabolism and CO₂ dynamics. Plankton respiration, and water–air CO₂ fluxes were measured in the epilimnia of 50 lakes, selected to lie within distinct watershed types in terms of postfire terrestrial succession in the boreal region of Northern Québec. Plankton respiration varied widely among lakes (from 21 to 211 μg C L^?1 day^?1), was negatively related to lake area, and positively related to dissolved organic carbon (DOC). All lakes were supersaturated in CO₂ and the resulting carbon (C) flux to the atmosphere (150 to over 3000 mg C m² day^?1) was negatively related to lake area and positively to DOC concentration. CO₂ fluxes were positively related to integrated water column respiration, suggesting a biological component in this flux. Both respiration and CO₂ fluxes were strongly negatively related to years after the last fire in the basin, such that lakes in recently burnt basins had significantly higher C emissions, even after the influence of lake size was removed. No significant differences were found in nutrients, chlorophyll, and DOC between lakes in different basin types, suggesting that the fire‐induced watershed features influence other, more subtle aspects, such as the quality of the organic C reaching lakes. The fire‐induced enhancement of lake organic C mineralization and C emissions represents a long‐term impact that increases the overall C loss from the landscape as the result of fire, but which has never been included in current regional C budgets and future projections. The need to account for this additional fire‐induced C loss becomes critical in the face of predictions of increasing incidence of fire in the circumboreal landscape.     

Precipitation pulses and soil CO2 flux in a Sonoran Desert ecosystem

Precipitation is a major driver of biological processes in arid and semiarid ecosystems. Soil biogeochemical processes in these water‐limited systems are closely linked to episodic rainfall events, and the relationship between microbial activity and the amount and timing of rainfall has implications for the whole‐system carbon (C) balance. Here, the influences of storm size and time between events on pulses of soil respiration were explored in an upper Sonoran Desert ecosystem. Immediately following experimental rewetting in the field, CO₂ efflux increased up to 30‐fold, but generally returned to background levels within 48 h. CO₂ production integrated over 48 h ranged from 2.5 to 19.3 g C m⁻² and was greater beneath shrubs than in interplant spaces. When water was applied on sequential days, postwetting losses of CO₂ were only half a large as initial fluxes, and the size of the second pulse increased with time between consecutive events. Soil respiration was more closely linked to the organic matter content of surface soils than to rainfall amount. Beneath shrubs, rates increased nonlinearly with storm size, reaching an asymptote at approximately 0.5 cm simulated storms. This nonlinear relationship stems from (1) resource limitation of microbial activity that is manifest at small time scales, and (2) greatly reduced process rates in deeper soil strata. Thus, beyond some threshold in storm size, increasing the duration or depth of soil moisture has little consequence for short‐term losses of CO₂. In addition, laboratory rewetting across a broad range in soil water content suggest that microbial activity and CO₂ efflux following rainfall may be further modified by the routing and redistribution of water along hillslopes. Finally, analysis of long‐term precipitation data suggests that half the monsoon storms in this system are sufficient to induce soil heterotrophic activity and C losses, but are not large enough to elicit autotrophic activity and C accrual by desert shrubs.     

Long-Term CO2 Variability in Two Shallow Tropical Lakes Experiencing Episodic Eutrophication and Acidification Events

Here we report the long-term (13-year) dynamics of surface pCO₂ and its response to episodic eutrophication and acidification events in two contrasting tropical coastal lakes, one clear-water and the other humic. A short-term nutrient addition experiment was also conducted in mesocosms in the humic lake where in situ eutrophication was moderate. Our objective was to elucidate the response of pCO₂ to interannual changes in key limnological conditions, such as nutrient concentrations and pH. The humic waters showed a median pCO₂ almost ninefold higher across the 13-year study than the clear waters, supporting pCO₂ values about tenfold above atmospheric equilibrium. Eutrophication of the clear-water lake resulted in a decrease in pCO₂ to median values below atmospheric equilibrium, producing a strong sink for atmospheric CO₂. In contrast, pCO₂ increased by over tenfold in both lakes during the acidification phase, resulting in very large CO₂ emissions to the atmosphere. Experimental nutrient additions in the humic lake showed a strong persistence of high pCO₂. The extreme variability in pCO₂ observed here might be a characteristic of tropical lakes and may have important consequences for regional carbon budgets.     

Carbon Cycling of Lake Kivu (East Africa): Net Autotrophy in the Epilimnion and Emission of CO2 to the Atmosphere Sustained by Geogenic Inputs

We report organic and inorganic carbon distributions and fluxes in a large (>2000 km²) oligotrophic, tropical lake (Lake Kivu, East Africa), acquired during four field surveys, that captured the seasonal variations (March 2007–mid rainy season, September 2007–late dry season, June 2008–early dry season, and April 2009–late rainy season). The partial pressure of CO₂ (pCO₂) in surface waters of the main basin of Lake Kivu showed modest spatial (coefficient of variation between 3% and 6%), and seasonal variations with an amplitude of 163 ppm (between 579±23 ppm on average in March 2007 and 742±28 ppm on average in September 2007). The most prominent spatial feature of the pCO₂ distribution was the very high pCO₂ values in Kabuno Bay (a small sub-basin with little connection to the main lake) ranging between 11213 ppm and 14213 ppm (between 18 and 26 times higher than in the main basin). Surface waters of the main basin of Lake Kivu were a net source of CO₂ to the atmosphere at an average rate of 10.8 mmol m⁻² d⁻¹, which is lower than the global average reported for freshwater, saline, and volcanic lakes. In Kabuno Bay, the CO₂ emission to the atmosphere was on average 500.7 mmol m⁻² d⁻¹ (∼46 times higher than in the main basin). Based on whole-lake mass balance of dissolved inorganic carbon (DIC) bulk concentrations and of its stable carbon isotope composition, we show that the epilimnion of Lake Kivu was net autotrophic. This is due to the modest river inputs of organic carbon owing to the small ratio of catchment area to lake surface area (2.15). The carbon budget implies that the CO₂ emission to the atmosphere must be sustained by DIC inputs of geogenic origin from deep geothermal springs.     

Fish Reliance on Littoral–Benthic Resources and the Distribution of Primary Production in Lakes

Pelagic, littoral, and terrestrial resources can all play a role in supporting consumers in lakes. The role of benthic algal-derived food web pathways in lakes is perhaps the least understood because limnologists have historically focused on pelagic (open-water) production and processes. We compiled carbon stable isotope data from 546 fish populations (75 lakes), and used a two end-member mixing model to calculate littoral–benthic reliance for each fish species in each lake. Fish littoral–benthic reliance values were averaged by lake to assess overall fish species benthic reliance for each lake. Lake-specific mean littoral reliance (BR_L; fish species not weighted according to production or biomass) averaged 57% and was independent of lake morphological and limnological attributes. For these same lakes, water column nutrients, light, and morphometry data were used to estimate whole-lake benthic algal and phytoplankton primary production. On average, benthic algae comprised 36% of whole-lake primary production (BP_f = 0.36). BP_f and BR_L were weakly correlated: BR_L tends to be high even in large/deep lakes in which benthic algae is a minor contributor to whole-lake primary production. The high littoral–benthic contribution to individual fish species appears to reflect the high concentration of fish species diversity in the littoral zone. Our work cannot be extrapolated to whole-lake fish production. However, the result is consistent with other work indicating that most fish species inhabit the littoral zone, whereas relatively few exclusively inhabit the pelagic. Our results suggest that it takes less primary production to support a single fish species in the littoral zone than is required to support a species in the pelagic.     

Progressive N limitation of plant response to elevated CO2: a microbiological perspective

A major uncertainty in predicting long-term ecosystem C balance is whether stimulation of net primary production will be sustained in future atmospheric CO₂ scenarios. Immobilization of nutrients (N in particular) in plant biomass and soil organic matter (SOM) provides negative feedbacks to plant growth and may lead to progressive N limitation (PNL) of plant response to CO₂ enrichment. Soil microbes mediate N availability to plants by controlling litter decomposition and N transformations as well as dominating biological N fixation. CO₂-induced changes in C inputs, plant nutrient demand and water use efficiency often have interactive and contrasting effects on microbes and microbially mediated N processes. One critical question is whether CO₂-induced N accumulation in plant biomass and SOM will result in N limitation of microbes and subsequently cause them to obtain N from alternative sources or to alter the ecosystem N balance. We reviewed the experimental results that examined elevated CO₂ effects on microbial parameters, focusing on those published since 2000. These results in general show that increased C inputs dominate the CO₂ impact on microbes, microbial activities and their subsequent controls over ecosystem N dynamics, potentially enhancing microbial N acquisition and ecosystem N retention. We reason that microbial mediation of N availability for plants under future CO₂ scenarios will strongly depend on the initial ecosystem N status, and the nature and magnitude of external N inputs. Consequently, microbial processes that exert critical controls over long-term N availability for plants would be ecosystem-specific. The challenge remains to quantify CO₂-induced changes in these processes, and to extrapolate the results from short-term studies with step-up CO₂ increases to native ecosystems that are already experiencing gradual changes in the CO₂ concentration.     

Spatial variation in flux, δ<Superscript>13</Superscript>C and δ<Superscript>2</Superscript>H of methane in a small Arctic lake with fringing wetland in western Greenland

Small lakes in northern latitudes represent a significant source of CH₄ to the atmosphere that is predicted to increase with warming in the Arctic. Yet, whole-lake CH₄ budgets are lacking as are measurements of δ¹³C-CH₄ and δ²H-CH₄. In this study, we quantify spatial variability of diffusive and ebullitive fluxes of CH₄ and corresponding δ¹³C-CH₄ and δ²H-CH₄ in a small, Arctic lake system with fringing wetland in southwestern Greenland during summer. Net CH₄ flux was highly variable, ranging from an average flux of 7 mg CH₄ m^?2 d^?1 in the deep-water zone to 154 mg CH₄ m^?2 d^?1 along the lake margin. Diffusive flux accounted for ~8.5 % of mean net CH₄ flux, with plant-mediated and ebullitive flux accounting for the balance of the total net flux. Methane content of emitted ebullition was low (mean ± SD 10 ± 17 %) compared to previous studies from boreal lakes and wetlands. Isotopic composition of net CH₄ emissions varied widely throughout the system, with δ¹³C-CH₄ ranging from ?66.2 to ?55.5 ‰, and δ²H-CH₄ ranging from ?345 to ?258 ‰. Carbon isotope composition of CH₄ in ebullitive flux showed wider variation compared to net flux, ranging from ?69.2 to ?49.2 ‰. Dissolved CH₄ concentrations were highest in the sediment and decreased up the water column. Higher concentrations of CH₄ in the hypoxic deep water coincided with decreasing dissolved O₂ concentrations, while methanotrophic oxidation dominated in the epilimnion based upon decreasing concentrations and increasing values of δ¹³C-CH₄ and δ²H-CH₄. The most depleted ¹³C- and ²H-isotopic values were observed in profundal bottom waters and in subsurface profundal sediments. Based upon paired δ¹³C and δ²H observations of CH₄, acetate fermentation was likely the dominant production pathway throughout the system. However, isotopic ratios of CH₄ in deeper sediments were consistent with mixing/transition between CH₄ production pathways, indicating a higher contribution of the CO₂ reduction pathway. The large spatial variability in fluxes of CH₄ and in isotopic composition of CH₄ throughout a single lake system indicates that the underlying mechanisms controlling CH₄ cycling (production, consumption and transport) are spatially heterogeneous. Net flux along the lake margin dominated whole-lake flux, suggesting the nearshore littoral area dominates CH₄ emissions in these systems. Future studies of whole-lake CH₄ budgets should consider this significant spatial heterogeneity.     

Regional Variability and Drivers of Below Ice CO<Subscript>2</Subscript> in Boreal and Subarctic Lakes

Northern lakes are ice-covered for considerable portions of the year, where carbon dioxide (CO₂) can accumulate below ice, subsequently leading to high CO₂ emissions at ice-melt. Current knowledge on the regional control and variability of below ice partial pressure of carbon dioxide (pCO₂) is lacking, creating a gap in our understanding of how ice cover dynamics affect the CO₂ accumulation below ice and therefore CO₂ emissions from inland waters during the ice-melt period. To narrow this gap, we identified the drivers of below ice pCO₂ variation across 506 Swedish and Finnish lakes using water chemistry, lake morphometry, catchment characteristics, lake position, and climate variables. We found that lake depth and trophic status were the most important variables explaining variations in below ice pCO₂ across the 506 lakes_. Together, lake morphometry and water chemistry explained 53% of the site-to-site variation in below ice pCO₂. Regional climate (including ice cover duration) and latitude only explained 7% of the variation in below ice pCO₂. Thus, our results suggest that on a regional scale a shortening of the ice cover period on lakes may not directly affect the accumulation of CO₂ below ice but rather indirectly through increased mobility of nutrients and carbon loading to lakes. Thus, given that climate-induced changes are most evident in northern ecosystems, adequately predicting the consequences of a changing climate on future CO₂ emission estimates from northern lakes involves monitoring changes not only to ice cover but also to changes in the trophic status of lakes.     

Integrating aquatic and terrestrial components to construct a complete carbon budget for a north temperate lake district

The development of complete regional carbon (C) budgets for different biomes is an integral step in the effort to predict global response and potential feedbacks to a changing climate regime. Wetland and lake contributions to regional C cycling remain relatively uncertain despite recent research highlighting their importance. Using a combination of field surveys and tower‐based carbon dioxide (CO₂) flux measurements, modeling, and published literature, we constructed a complete C budget for the Northern Highlands Lake District in northern Wisconsin/Michigan, a ～6400 km² region rich in lakes and wetlands. This is one of the first regional C budgets to incorporate aquatic and terrestrial C cycling under the same framework. We divided the landscape into three major compartments (forests, wetlands, and surface waters) and quantified all major C fluxes into and out of those compartments, with a particular focus on atmospheric exchange but also including sedimentation in lakes and hydrologic fluxes. Landscape C storage was dominated by peat‐containing wetlands and lake sediments, which make up only 20% and 13% of the landscape area, respectively, but contain >80% of the total fixed C pool (ca. 400 Tg). We estimated a current regional C accumulation of 1.1±0.1 Tg yr^?1, and the largest regional flux was forest net ecosystem exchange (NEE) into aggrading forests for a total of 1.0±0.1 Tg yr^?1. Mean wetland NEE (0.12±0.06 Tg yr^?1 into wetlands), lake CO₂ emissions and riverine efflux (each ca. 0.03±0.01 Tg yr^?1) were smaller but of consequence to the overall budget. Hydrologic transport from uplands/wetlands to surface waters within the region was an important vector of terrestrial C. Regional C fluxes and pools would be misrepresented without inclusion of surface waters and wetlands, and C budgets in heterogeneous landscapes open opportunities to examine the sensitivities of important fluxes to changes in climate and land use/land cover.     

Major changes in CO<Subscript>2</Subscript> efflux when shallow lakes shift from a turbid to a clear water state

Lakes can be sources or sinks of carbon, depending on local conditions. Recent studies have shown that the CO₂ efflux increases when lakes recover from eutrophication, mainly as a result of a reduction in phytoplankton biomass, leading to less uptake of CO₂ by producers. We hypothesised that lake restoration by removal of coarse fish (biomanipulation) or invasion of mussels would have a similar effect. We studied 14–22 year time series of five temperate Danish lakes and found profound effects on the calculated CO₂ efflux of major shifts in ecosystem structure. In two lakes, where limited colonisation of submerged macrophytes occurred after biomanipulation or invasion of zebra mussels (Dreissena polymorpha), the efflux increased significantly with decreasing phytoplankton chlorophyll a. In three lakes with major interannual variation in macrophyte abundance, the efflux declined with increasing macrophyte abundance in two of the lakes, while no relation to macrophytes or chlorophyll a was found in the third lake, likely due to high groundwater input to this lake. We conclude that clearing water through invasive mussels or lake restoration by biomanipulation may increase the CO₂ efflux from lakes. However, if submerged macrophytes establish and form dense beds, the CO₂ efflux may decline again.     

From Bacteria to Piscivorous Fish: Estimates of Whole-Lake and Component-Specific Metabolism with an Ecosystem Approach

The influence of functional group specific production and respiration patterns on a lake''s metabolic balance remains poorly investigated to date compared to whole-system estimates of metabolism. We employed a summed component ecosystem approach for assessing lake-wide and functional group-specific metabolism (gross primary production (GPP) and respiration (R)) in shallow and eutrophic Lake Võrtsjärv in central Estonia during three years. Eleven functional groups were considered: piscivorous and benthivorous fish; phyto-, bacterio-, proto- and metazooplankton; benthic macroinvertebrates, bacteria and ciliates; macrophytes and their associated epiphytes. Metabolism of these groups was assessed by allometric equations coupled with daily records of temperature and hydrology of the lake and measurements of food web functional groups biomass. Results revealed that heterotrophy dominated most of the year, with a short autotrophic period observed in late spring. Most of the metabolism of the lake could be attributed to planktonic functional groups, with phytoplankton contributing the highest share (90% of GPP and 43% of R). A surge of protozooplankton and bacterioplankton populations forming the microbial loop caused the shift from auto- to heterotrophy in midsummer. Conversely, the benthic functional groups had overall a very small contribution to lake metabolism. We validated our ecosystem approach by comparing the GPP and R with those calculated from O₂ measurements in the lake. Our findings are also in line with earlier productivity studies made with ¹⁴C or chlorophyll a (chl-a) based equations. Ideally, the ecosystem approach should be combined with diel O₂ approach for investigating critical periods of metabolism shifts caused by dynamics in food-web processes.     

Increased high‐latitude photosynthetic carbon gain offset by respiration carbon loss during an anomalous warm winter to spring transition

Arctic and boreal ecosystems play an important role in the global carbon (C) budget, and whether they act as a future net C sink or source depends on climate and environmental change. Here, we used complementary in situ measurements, model simulations, and satellite observations to investigate the net carbon dioxide (CO₂) seasonal cycle and its climatic and environmental controls across Alaska and northwestern Canada during the anomalously warm winter to spring conditions of 2015 and 2016 (relative to 2010–2014). In the warm spring, we found that photosynthesis was enhanced more than respiration, leading to greater CO₂ uptake. However, photosynthetic enhancement from spring warming was partially offset by greater ecosystem respiration during the preceding anomalously warm winter, resulting in nearly neutral effects on the annual net CO₂ balance. Eddy covariance CO₂ flux measurements showed that air temperature has a primary influence on net CO₂ exchange in winter and spring, while soil moisture has a primary control on net CO₂ exchange in the fall. The net CO₂ exchange was generally more moisture limited in the boreal region than in the Arctic tundra. Our analysis indicates complex seasonal interactions of underlying C cycle processes in response to changing climate and hydrology that may not manifest in changes in net annual CO₂ exchange. Therefore, a better understanding of the seasonal response of C cycle processes may provide important insights for predicting future carbon–climate feedbacks and their consequences on atmospheric CO₂ dynamics in the northern high latitudes.     

Two decades of tropical cyclone impacts on North Carolina’s estuarine carbon,nutrient and phytoplankton dynamics: implications for biogeochemical cycling and water quality in a stormier world

Coastal North Carolina (USA) has experienced 35 tropical cyclones over the past 2 decades; the frequency of these events is expected to continue in the foreseeable future. Individual storms had unique and, at times, significant hydrologic, nutrient-, and carbon (C)-loading impacts on biogeochemical cycling and phytoplankton responses in a large estuarine complex, the Pamlico Sound (PS) and Neuse River Estuary (NRE). Major storms caused up to a doubling of annual nitrogen and tripling of phosphorus loading compared to non-storm years; magnitudes of loading depended on storm tracks, forward speed, and precipitation in NRE-PS watersheds. With regard to C cycling, NRE-PS was a sink for atmospheric CO₂ during dry, storm-free years and a significant source of CO₂ in years with at least one storm, although responses were storm-specific. Hurricane Irene (2011) mobilized large amounts of previously-accumulated terrigenous C in the watershed, mainly as dissolved organic carbon, and extreme winds rapidly released CO₂ to the atmosphere. Historic flooding after Hurricanes Joaquin (2015) and Matthew (2016) provided large inputs of C from the watershed, modifying the annual C balance of NRE-PS and leading to sustained CO₂ efflux for months. Storm type affected biogeochemical responses as C-enriched floodwaters enhanced air–water CO₂ exchange during ‘wet’ storms, while CO₂ fluxes during ‘windy’ storms were largely supported by previously-accumulated C. Nutrient loading and flushing jointly influenced spatio-temporal patterns of phytoplankton biomass and composition. These findings suggest the importance of incorporating freshwater discharge and C dynamics in nutrient management strategies for coastal ecosystems likely to experience a stormier future.     

Extreme storms cause rapid but short-lived shifts in nearshore subtropical bacterial communities

Climate change scenarios predict tropical cyclones will increase in both frequency and intensity, which will escalate the amount of terrestrial run-off and mechanical disruption affecting coastal ecosystems. Bacteria are key contributors to ecosystem functioning, but relatively little is known about how they respond to extreme storm events, particularly in nearshore subtropical regions. In this study, we combine field observations and mesocosm experiments to assess bacterial community dynamics and changes in physicochemical properties during early- and late-season tropical cyclones affecting Okinawa, Japan. Storms caused large and fast influxes of freshwater and terrestrial sediment – locally known as red soil pollution – and caused moderate increases of macronutrients, especially SiO₂ and PO₄³⁻, with up to 25 and 0.5 μM respectively. We detected shifts in relative abundances of marine and terrestrially derived bacteria, including putative coral and human pathogens, during storm events. Soil input alone did not substantially affect marine bacterial communities in mesocosms, indicating that other components of run-off or other storm effects likely exert a larger influence on bacterial communities. The storm effects were short-lived and bacterial communities quickly recovered following both storm events. The early- and late-season storms caused different physicochemical and bacterial community changes, demonstrating the context-dependency of extreme storm responses in a subtropical coastal ecosystem.     

Increased Feeding and Nutrient Excretion of Adult Antarctic Krill,Euphausia superba,Exposed to Enhanced Carbon Dioxide (CO2)

Ocean acidification has a wide-ranging potential for impacting the physiology and metabolism of zooplankton. Sufficiently elevated CO₂ concentrations can alter internal acid-base balance, compromising homeostatic regulation and disrupting internal systems ranging from oxygen transport to ion balance. We assessed feeding and nutrient excretion rates in natural populations of the keystone species Euphausia superba (Antarctic krill) by conducting a CO₂ perturbation experiment at ambient and elevated atmospheric CO₂ levels in January 2011 along the West Antarctic Peninsula (WAP). Under elevated CO₂ conditions (∼672 ppm), ingestion rates of krill averaged 78 µg C individual⁻¹ d⁻¹ and were 3.5 times higher than krill ingestion rates at ambient, present day CO₂ concentrations. Additionally, rates of ammonium, phosphate, and dissolved organic carbon (DOC) excretion by krill were 1.5, 1.5, and 3.0 times higher, respectively, in the high CO₂ treatment than at ambient CO₂ concentrations. Excretion of urea, however, was ∼17% lower in the high CO₂ treatment, suggesting differences in catabolic processes of krill between treatments. Activities of key metabolic enzymes, malate dehydrogenase (MDH) and lactate dehydrogenase (LDH), were consistently higher in the high CO₂ treatment. The observed shifts in metabolism are consistent with increased physiological costs associated with regulating internal acid-base equilibria. This represents an additional stress that may hamper growth and reproduction, which would negatively impact an already declining krill population along the WAP.     

Boundary layer budgets for regional estimates of scalar fluxes

The paper considers the theory and application of budget techniques for regional scalar flux estimation using the daytime convective boundary layer (CBL) and the nocturnal boundary layer (NBL). CBL techniques treat the well mixed layer of air between heights of, say, 100 m and 1000 m as an integrator of surface fluxes along the path of a column of air moving over the landscape. They calculate the average surface flux from the scalar concentration in and above the mixed layer, and the CBL height. The flux estimates are averaged over regions of 10–10⁴ km² extending 10 to 100 km upwind. An integral form of the CBL budget is used to estimate daily regional rates of CO₂ uptake and evaporation from three data sets. There was plausible agreement between the estimates and locally measured fluxes. CBL budgets have great potential for estimating regional scalar fluxes, but there is an urgent need for validation through direct measurements of fluxes and budget parameters. NBL budgets are useful when low-level, radiative inversions inhibit vertical mixing. Surface scalar fluxes can then be estimated from the rate of concentration change below the inversion. An example application for estimating the nocturnal CO₂ flux is given. While simple in concept, NBL budgets are more difficult to apply in practice because of the unpredictability of the depth of the layer and sometimes, its absence altogether. On the other hand, the depth of the atmospheric mixing chamber is better defined, few assumptions are required and the concentration changes usually will be larger and hence more easily detectable than in CBL budgetting.     

Terrestrial fluxes of carbon in GCP carbon budgets

The Global Carbon Project (GCP) has published global carbon budgets annually since 2007 (Canadell et al. [2007], Proc Natl Acad Sci USA, 104, 18866–18870; Raupach et al. [2007], Proc Natl Acad Sci USA, 104, 10288–10293). There are many scientists involved, but the terrestrial fluxes that appear in the budgets are not well understood by ecologists and biogeochemists outside of that community. The purpose of this paper is to make the terrestrial fluxes of carbon in those budgets more accessible to a broader community. The GCP budget is composed of annual perturbations from pre‐industrial conditions, driven by addition of carbon to the system from combustion of fossil fuels and by transfers of carbon from land to the atmosphere as a result of land use. The budget includes a term for each of the major fluxes of carbon (fossil fuels, oceans, land) as well as the rate of carbon accumulation in the atmosphere. Land is represented by two terms: one resulting from direct anthropogenic effects (Land Use, Land‐Use Change, and Forestry or land management) and one resulting from indirect anthropogenic (e.g., CO₂, climate change) and natural effects. Each of these two net terrestrial fluxes of carbon, in turn, is composed of opposing gross emissions and removals (e.g., deforestation and forest regrowth). Although the GCP budgets have focused on the two net terrestrial fluxes, they have paid little attention to the gross components, which are important for a number of reasons, including understanding the potential for land management to remove CO₂ from the atmosphere and understanding the processes responsible for the sink for carbon on land. In contrast to the net fluxes of carbon, which are constrained by the global carbon budget, the gross fluxes are largely unconstrained, suggesting that there is more uncertainty than commonly believed about how terrestrial carbon emissions will respond to future fossil fuel emissions and a changing climate.     

Biogeochemical and hydrological controls on carbon export from a forested catchment in central Japan

Here we review research on the links between hydrological processes and the biogeochemical environment controlling the dynamics of dissolved organic carbon (DOC) and dissolved inorganic carbon (DIC) in temperate forested catchments. In addition, we present the results of original experiments. The spatial and temporal changes in DIC and DOC concentrations were investigated in tandem with observations of elementary belowground hydrological processes for a forested headwater catchment in central Japan. The soil CO₂ gas concentration, which is the source of DIC, increased with depth. The hydrological characteristics of groundwater also affected the spatial variation of partial pressure of dissolved CO₂ (pCO₂) in groundwater. The temporal variations in the soil CO₂ gas concentration and the pCO₂ values of groundwater suggested that the dynamics of DIC were strongly affected by biological activity. However, the geographical differences in DIC leaching were affected not only by the link between climatological conditions and biological activity, but also by other factors such as geomorphologic conditions. The DOC concentrations decreased with selective removal of hydrophobic acid during vertical infiltration. The major DOC-removal mechanisms were retention of metal-organic complexes to soil solids in the upper mineral soil layer and decomposition of DOC in the lower mineral soil layer. The responses of the DIC and DOC concentrations to changes in discharge during storm events were explained by the spatial variation in the DIC and DOC concentrations. Seasonal variation, which represents a long-term change, in stream water DOC concentrations was affected not only by the temporal variation in DOC concentrations in the topsoil, which may be affected by biological activity, but also by water movement, which transports DOC from the topsoil to stream water. These results indicate that both a biogeochemical approach and a method for evaluating the hydrological effects on carbon dynamics are critical for clarifying the carbon accumulation-and-release processes in forested ecosystems.