Spatial sampling bias and model complexity in stream‐based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin,USA

Leveraging existing presence records and geospatial datasets, species distribution modeling has been widely applied to informing species conservation and restoration efforts. Maxent is one of the most popular modeling algorithms, yet recent research has demonstrated Maxent models are vulnerable to prediction errors related to spatial sampling bias and model complexity. Despite elevated rates of biodiversity imperilment in stream ecosystems, the application of Maxent models to stream networks has lagged, as has the availability of tools to address potential sources of error and calculate model evaluation metrics when modeling in nonraster environments (such as stream networks). Herein, we use Maxent and customized R code to estimate the potential distribution of paddlefish (Polyodon spathula) at a stream‐segment level within the Arkansas River basin, USA, while accounting for potential spatial sampling bias and model complexity. Filtering the presence data appeared to adequately remove an eastward, large‐river sampling bias that was evident within the unfiltered presence dataset. In particular, our novel riverscape filter provided a repeatable means of obtaining a relatively even coverage of presence data among watersheds and streams of varying sizes. The greatest differences in estimated distributions were observed among models constructed with default versus AIC_C‐selected parameterization. Although all models had similarly high performance and evaluation metrics, the AIC_C‐selected models were more inclusive of westward‐situated and smaller, headwater streams. Overall, our results solidified the importance of accounting for model complexity and spatial sampling bias in SDMs constructed within stream networks and provided a roadmap for future paddlefish restoration efforts in the study area.     

Modifying the United States National Hydrography Dataset to improve data quality for ecological models

The US National Hydrography Dataset (NHD) is the primary spatial hydrography data source for research and conservation of stream ecosystems in the United States due to its national coverage, high resolution, and delivery of high-volume attribute data. However, despite its wide use, numerous topological errors limit the utility of the NHD for the critical needs of ecological and environmental modeling when network connectivity is of interest. In this paper we demonstrate an automated process that integrates a set of GIS tools to identify, track, and correct four major types of topological errors in the entire NHD network (at the scale of 1:100,000) of the conterminous United States, thereby quantifying and summarizing the type, magnitude, and spatial distribution of topological errors in the NHD. Topological errors occurred on approximately 20% of the flowline features in the NHD dataset, with pseudo nodes being the dominant type of error. In a case study of New River Basin of North Carolina, Virginia, and West Virginia USA, after correcting the topology of the NHD network the number of streams in the database designated as first order decreased by 14%, and the average length of stream between confluences (i.e., inter-confluence stream segments) increased by slightly over half of a kilometer (0.53 km). The topology-corrected NHD dataset should particularly facilitate large-scale (e.g., national or regional) ecological and environmental applications requiring topologically sound stream networks.     

Climate variability masks the impacts of land use change on nutrient export in a suburbanizing watershed

Suburbanization negatively impacts aquatic systems by altering hydrology and nutrient loading. These changes interact with climate and aquatic ecosystem processes to alter nutrient flux dynamics. We used a long term data set (1993–2009) to investigate the influence of suburbanization, climate, and in-stream processes on nitrogen and phosphorus export in rivers draining the Ipswich and Parker River watersheds in northeastern MA, USA. During this timeframe population density increased in these watersheds by 14 % while precipitation varied by 46 %. We compared nutrient export patterns from the two larger watersheds with those from two nested headwater catchments collected over a nine year period (2001–2009). The headwater catchments were of contrasting, but stable, land uses that dominate the larger watersheds (suburban and forested). Despite ongoing land use change and an increase in population density in the mainstem watersheds, we did not detect an increase in dissolved inorganic nitrogen (DIN) or PO₄ concentration or export over the 16-year time period. Inter-annual climate and associated runoff variability was the major control. Annual DIN and PO₄ export increased with greater annual precipitation in the Ipswich and the Parker River watersheds, as well as the forested headwater catchment. In contrast, annual DIN export fluxes from the suburban headwater catchment were less affected by precipitation variability, with inter-annual export fluxes negatively correlated with mean annual temperature. The larger watershed exports diverged from headwater exports, particularly during summer, low-flow periods, suggesting retention of DIN and PO₄. Our study shows suburban headwater exports respond to inter-annual variation in runoff and climate differently than forested headwater exports, but the impacts from headwater streams could be buffered by the river network. The net effect is that inter-annual variation and network buffering can mitigate higher nutrient exports from larger suburbanizing watersheds over decadal time periods.     

美国大陆五个山区集水区的河溪结构分析

河溪结构及其关联的空间特征,是研究集水区中能量和物质移动规律所不可缺少的内容,利用美国地质调查局的水文数据库和地理信息系统（ＡＲＣ／ＩＮＦＯ）,对美国大陆５个主要山地中典型集水区河溪的数据量、密度,分布结构以及河溪岸边带的组成,进行了分析和比较。５个山地分别是：西北太平洋沿岸,西部卡斯卡特山,中部落矶山,东部阿巴拉契亚山和南部欧扎克山,发现这５个集水区中的河溪网络结构非常相似,一级河溪大约占河溪总     

Elevated air carbon dioxide concentrations increase dissolved carbon leaching from a cropland soil

Terrestrial sources of nitrogen (N), particularly N-fixing alder, may be important for sustaining production in headwater streams that typically lack substantial subsidies of marine-derived nutrients from spawning salmon yet support upstream-dispersing juvenile salmonids. However, other physiographic characteristics, such as watershed slope and topographic wetness, also control transport of nutrients to streams and may confound apparent linkages between alder and stream N. Seasonal patterns in precipitation and temperature may interact with watershed characteristics to modulate stream N availability. We empirically modeled the effect of alder cover and other watershed physiographic variables on stream N and contrasted these relationships over the growing season among 25 first-order streams from the lower Kenai Peninsula, Alaska. For each date, percent alder cover, mean topographic wetness, and mean slope were used as watershed predictors of NO _x –N concentration (nitrate?+?nitrite) and daily NO _x –N yield using Generalized Additive Models (GAM) and compared using Akaike’s Information Criterion (AIC_c). Alder cover was the only probable model and explained 75–96% of the variation in NO _x –N concentration and 83–89% of the variation in daily NO _x –N yield. The relationship between alder and both NO _x –N concentration and daily NO _x –N yield changed from constant inputs in May across the range of alder cover (linear fit) to increasing inputs in July and September (non-linear fits) implying that high-alder watersheds were N-saturated. The strong linkage between alder and stream N coupled with the concurrent timing of maximum stream N from alder in the spring to salmon fry emergence indicates the potential importance of this subsidy to headwater stream ecosystems.     

Watershed‐level brook trout genetic structuring: Evaluation and application of riverscape genetics models

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河流流量对流域下垫面特性的响应

以美国切斯比克湾地区为例,对该区域150个小流域的下垫面特性(包括土地利用类型、地面不透水系数和土壤物理属性)进行了提取,根据1984—2004年间逐日流量观测数据计算出了33个水文指标,运用逐步回归方法在不同地理区分析了9种下垫面特性对其中17个重要水文指标的影响。结果表明:随着草地和林地比例的增加,流量趋于减小、流量变化趋于稳定,随着建设用地和不透水层的增加,流量增加、流量变化剧烈,随着土壤水文组等级的升高,流量减少;在整个切斯比克湾流域,对流域下垫面特性响应最为显著的水文指标是高脉冲个数及历时,在阿巴拉契亚高地地区响应最为显著的水文指标是年极值流量、高脉冲个数及历时,在皮德蒙特山地响应最为显著的水文指标是高脉冲个数及历时,在沿海平原地区响应最为显著的水文指标是高脉冲个数及历时、流量变化的速率与频率。     

More than a corridor: use of a main stem stream as supplemental foraging habitat by a brook trout metapopulation

Coldwater fishes in streams, such as brook trout (Salvelinus fontinalis), typically are headwater specialists that occasionally expand distributions downstream to larger water bodies. It is unclear, however, whether larger streams function simply as dispersal corridors connecting headwater subpopulations, or as critical foraging habitat needed to sustain large mobile brook trout. Stable isotopes (δ¹³C and δ¹⁵N) and a hierarchical Bayesian mixing model analysis was used to identify brook trout that foraged in main stem versus headwater streams of the Shavers Fork watershed, West Virginia. Headwater subpopulations were composed of headwater and to a lesser extent main stem foraging individuals. However, there was a strong relationship between brook trout size and main stem prey contributions. The average brook trout foraging on headwater prey were limited to 126 mm standard length. This size was identified by mixing models as a point where productivity support switched from headwater to main stem dependency. These results, similar to other studies conducted in this watershed, support the hypothesis that productive main stem habitat maintain large brook trout and potentially facilitates dispersal among headwater subpopulations. Consequently, loss of supplementary main stem foraging habitats may explain loss of large, mobile fish and subsequent isolation of headwater subpopulations in other central Appalachian watersheds.     

Effects of Watershed History on Dissolved Organic Matter Characteristics in Headwater Streams

Dissolved organic matter (DOM) is recognized as a major component in the global carbon cycle and is an important driver in aquatic ecosystem function. Climate, land use, and forest cover changes all impact stream DOM and alter biogeochemical cycles in terrestrial environments. We determined the temporal variation in DOM quantity and quality in headwater streams at a reference watershed (REF), a watershed clear-cut 30 years ago (CC), and a watershed converted to a white pine plantation 50 years ago (WP) at the US Forest Service, Coweeta Hydrologic Laboratory, in the Nantahala Mountains of western North Carolina, USA. Average stream dissolved organic carbon (DOC) concentrations in CC or WP were 60 and 80% of those in REF, respectively. Stream DOM composition showed that the difference was mainly due to changes in humic-like components in chromophoric DOM. In addition, excitation–emission matrix fluorescence data with parallel factor analysis indicate that although the concentration of protein-like components did not differ significantly among watersheds, their relative abundance showed an enrichment in CC and WP compared to REF. The ratio of humic acid-type to fulvic acid-type components was highest and lowest at REF and WP, respectively. Our data suggest that forest ecosystem disturbance history affects the DOM quantity and quality in headwater streams over decades as a result of changes in watershed soil organic matter characteristics due to differences in organic matter inputs.     

Riparian control on NO3 −, DOC, and dissolved Fe concentrations in mountainous streams, northern Japan

We evaluated (1) the longitudinal pattern of stream chemistry and (2) the effects of the riparian zone on this longitudinal pattern for nitrate (NO₃ ⁻), dissolved organic carbon (DOC), and total dissolved iron (Fe). We selected two small watersheds; the “southern watershed” had an extending riparian wetland and the “northern watershed” had a narrow riparian area. Stream NO₃ ⁻ concentrations decreased from the spring to outlet of both watersheds. In the southern watershed, stream DOC concentration decreased from the spring to midstream and then increased to the outlet. Stream Fe concentration in the southern watershed longitudinally increased. On the other hand, the northern watershed exhibited no longitudinal pattern for DOC and Fe concentrations. In both watersheds, while NO₃ ⁻ concentrations in the soil and ground water were lower than those in the stream waters, DOC and Fe concentrations exhibited the opposite patterns. The longitudinal decreases of NO₃ ⁻ concentrations in both streams and increase of stream Fe in the southern watershed mainly resulted from the inflow of the soil and ground water to the stream. The decrease in stream DOC from the spring to midstream in the southern watershed was due to the deep groundwater having low DOC, while the subsequent increase to the surrounding soil and ground water. Moreover, considerations of stream solute flow with soil and ground water chemistry suggested other mechanisms adding NO₃ ⁻ and removing/diluting DOC and Fe, especially for the northern watershed; coexistence of oxidizing and reducing conditions in the riparian zone might control the longitudinal concentration change in the stream water chemistry.     

Landscape Determinants of Nonindigenous Fish Invasions

Much has been written about the influence of exotic or nonindigenous species on natural habitats and communities of organisms, but little is known of the physical or biological conditions that lead to successful invasion of native habitats and communities by exotics. We studied invasivity factors in headwater streams of the Susquehanna River West Branch, which drains portions of the northern Appalachian Plateau. A replicated (two major tributaries) 3 × 3 factorial design was used to determine landscape effects of size (stream order) and quality (land use) on abiotic (physical and chemical) and biotic (fish community structure and function) stream attributes. Seven (21%) of thirty-four fish species (brown trout, common carp, mimic shiner, bluegill, smallmouth bass, fantail darter, and banded darter) collected in the eighteen streams sampled were nonindigenous to the basin. Watershed size (stream orders 1, 3, and 5) significantly affected stream geomorphologic and habitat variables (gradient, width, depth, current velocity, diel water temperature, bank overhang, canopy cover, and woody debris density) but not water-quality variables, while land use in watersheds (conservation, mining, and agriculture) significantly affected measured water-quality variables (alkalinity and concentrations of manganese, calcium, chloride, nitrate, and total dissolved solids) but not stream physical or habitat quality. Both watershed size and land use affected fish-community variables such as presence of particular species, species density, species diversity, tolerance diversity, and mean fish size, but in both cases the effect was transparent to native-origin status of fish species. No relationships were found between occurrence of nonindigenous species in watersheds and trophic structure or functional diversity. Therefore, the hypothesis that reduced species diversity increases vulnerability to nonindigenous species was not supported. However, the spatial variation associated with both water-quality and habitat-quality factors was greater in streams with mixed (those with nonindigenous species) than with exclusively native assemblages. These findings suggest that the mechanism for successful invasion by nonindigenous or exotic species is through change in water or habitat quality associated with human or natural disturbances, such as agriculture and mining activities in watersheds. Biotic factors appear to play no or a lesser role in the invasibility of northern Appalachian lotic systems.     

Suppression of nitrate formation within an exotic conifer plantation

Summary Nitrate-N losses to stream waters and soil inorganic N pools, nitrifying potentials and NO₃-N production rates were measured in 2 adjacent watersheds, one used as pasture and the other planted in exotic conifer forest (Pinus radiata D. Don). Estimated NO₃-N loss to stream waters draining the pine and pasture watersheds were 0.6kg ha⁻¹ y⁻¹ and 7.6 kg ha⁻¹ y⁻¹ respectively. Ammonium-N pool sizes were not significantly different between soils in the two watersheds but NO₃−N pools and nitrifying potentials were always lower in the pine watershed soil samples. Laboratory incubation experiments indicated that suppression of NO₃−N formation in pine watershed soils required the presence of live tree roots and was not due to the direct action of allelopathic chemicals on nitrifiers.     

Effects of urban stream burial on nitrogen uptake and ecosystem metabolism: implications for watershed nitrogen and carbon fluxes

Urbanization has resulted in the extensive burial and channelization of headwater streams, yet little is known about the impacts of stream burial on ecosystem functions critical for reducing downstream nitrogen (N) and carbon (C) exports. In order to characterize the biogeochemical effects of stream burial on N and C, we measured NO₃ ^? uptake (using ¹⁵N-NO₃ ^? isotope tracer releases) and gross primary productivity (GPP) and ecosystem respiration (ER) (using whole stream metabolism measurements). Experiments were carried out during four seasons, in three paired buried and open stream reaches, within the Baltimore Ecosystem Study Long-term Ecological Research site. Stream burial increased NO₃ ^? uptake lengths by a factor of 7.5 (p < 0.01) and decreased NO₃ ^? uptake velocity and areal NO₃ ^? uptake rate by factors of 8.2 (p < 0.05) and 9.6 (p < 0.001), respectively. Stream burial decreased GPP by a factor of 11.0 (p < 0.01) and decreased ER by a factor of 5.0 (p < 0.05). From fluorescence Excitation Emissions Matrices analysis, buried streams were found to have significantly altered C quality, showing less labile dissolved organic matter. Furthermore, buried streams had significantly lower transient storage (TS) and water temperatures. Differences in NO₃ ^? uptake, GPP, and ER in buried streams, were primarily explained by decreased TS, light availability, and C quality, respectively. At the watershed scale, we estimate that stream burial decreases NO₃ ^? uptake by 39 % and C production by 194 %. Overall, our results suggest that stream burial significantly impacts NO₃ ^? uptake, stream metabolism, and the quality of organic C exported from watersheds. Given the large impacts of stream burial on stream ecosystem processes, daylighting or de-channelization of streams, through hydrologic floodplain reconnection, may have the potential to alter ecosystem functions in urban watersheds, when used appropriately.     

Spatial relationships of aluminum chemistry in the streams of the Hubbard Brook Experimental Forest,New Hampshire

Aluminum chemistry was evaluated in two headwater streams in the White Mountains of New Hampshire. Observed elevational trends in stream aluminum chemistry may be related to spatial variations of vegetation type and mineral soil depth within the watersheds. At the highest elevations maximum densities of spruce and fir vegetation occur and aluminum appears to be mobilized predominantly by transformations involving dissolved organic matter. At the mid-elevations hardwood vegetation predominates and the mechanism of aluminum mobilization shifts to dissolution by strong acids within the mineral soil. At the lowest elevations, relatively thick mineral soil seems to limit aluminum mobility, resulting in low concentrations in streamwater. Comparison of these results with an earlier study of an adjacent watershed, indicates that subtle differences in watershed characteristics such as tree species distribution and topography may cause significant variations in stream aluminum chemistry. Control of aluminum mobility by imogolite minerals was not indicated by the stream chemistry of these watersheds. To determine the relationship between acidic deposition and aluminum mobility, natural variations which occur in the aluminum cycle must be addressed.     

Predicting fine‐scale distributions of peripheral aquatic species in headwater streams

Headwater species and peripheral populations that occupy habitat at the edge of a species range may hold an increased conservation value to managers due to their potential to maximize intraspecies diversity and species' adaptive capabilities in the context of rapid environmental change. The southern Appalachian Mountains are the southern extent of the geographic range of native Salvelinus fontinalis and naturalized Oncorhynchus mykiss and Salmo trutta in eastern North America. We predicted distributions of these peripheral, headwater wild trout populations at a fine scale to serve as a planning and management tool for resource managers to maximize resistance and resilience of these populations in the face of anthropogenic stressors. We developed correlative logistic regression models to predict occurrence of brook trout, rainbow trout, and brown trout for every interconfluence stream reach in the study area. A stream network was generated to capture a more consistent representation of headwater streams. Each of the final models had four significant metrics in common: stream order, fragmentation, precipitation, and land cover. Strahler stream order was found to be the most influential variable in two of the three final models and the second most influential variable in the other model. Greater than 70% presence accuracy was achieved for all three models. The underrepresentation of headwater streams in commonly used hydrography datasets is an important consideration that warrants close examination when forecasting headwater species distributions and range estimates. Additionally, it appears that a relative watershed position metric (e.g., stream order) is an important surrogate variable (even when elevation is included) for biotic interactions across the landscape in areas where headwater species distributions are influenced by topographical gradients.     

Assessing stream integrity based on interpretations of map-based riparian and subbasin properties

Ecosystems have become a primary focus for conservation efforts seeking to maintain native freshwater biodiversity. Inherent in lotic ecosystem studies is consideration of the influences that multiscale environmental properties have on the state of biological communities and ecological processes, herein referred to more generally as stream integrity. The Watershed Habitat Evaluation and Biotic Integrity Protocol (WHEBIP) was developed to provide rapid assessment of stream integrity for stream segments throughout watersheds based on riparian and subbasin features interpreted principally from aerial imagery and topographic maps. Protocol calibration was based on relationships between WHEBIP scores and aquatic community and aquatic habitat field data collected in the French Creek watershed, Chautauqua County, NY, USA. A test of the protocol in the Cussewago Creek watershed, Crawford and Erie Counties, PA, USA, indicated that the WHEBIP can be used as a generalized-stream integrity rapid-assessment tool, especially related to fish communities. However, the protocol’s ability to predict stream macroinvertebrate biological integrity measures was limited, emphasizing that it should be used primarily as a stratification tool to guide the classification of stream integrity within watersheds.     

Stream invertebrate communities of Mongolia: current structure and expected changes due to climate change

ABSTRACT: BACKGROUND: Mongolia's riverine landscape is divided into three watersheds, differing in extent of permafrost, amount of precipitation and in hydrological connectivity between sub-drainages. In order to assess the vulnerability of macroinvertebrate communities to ongoing climate change, we consider the taxonomic and functional structures of stream communities in two major watersheds: The Central Asian Internal Watershed (CAIW) and the Arctic Ocean Watershed (AOW), together covering 86.1% of Mongolia's surface area. We assess the consequences of the hydrological connectivity between sub-drainages on the nestedness and distinctness of the stream communities. And accordingly, we discuss the expected biotic changes to occur in each watershed as a consequence of climate change. RESULTS: Gamma and beta diversities were higher in the CAIW than the AOW. High community nestedness was also found in the CAIW along with a higher heterogeneity of macroinvertebrate assemblage structure. Assemblages characteristic of cold headwater streams in the CAIW, were typical of the drainages of the Altai Mountain range. Macroinvertebrate guilds of the CAIW streams exhibited traits reflecting a high stability and low resilience capacity for eutrophication. In contrast, the community of the AOW had lower nestedness and a combination of traits reflecting higher stability and a better resilience capacity to disturbances. CONCLUSION: Higher distinctness of stream communities is due to lower connectivity between the drainages. This was the case of the stream macroinvertebrate communities of the two major Mongolian watersheds, where connectivity of streams between sub-drainages is an important element structuring their communities. Considering differences in the communities' guild structure, hydrological connectivity and different magnitudes of upcoming impacts of climate change between the two watersheds, respective stream communities will be affected differently. The hitherto different communities will witness an increasing differentiation and divergent adaptations for the upcoming changes. Accordingly, in an increasing awareness to protect Mongolia's nature, our results encourage adapting conservation planning and management strategies specifically by watershed.     

Productivity and significance of headwater streams: population structure and biomass of the black-bellied salamander (Desmognathus quadramaculatus)

1. Headwater streams are a significant feature of the southern Appalachian landscape, comprising more than 70% of the total stream length in the region. Salamanders are the dominant vertebrate within headwater‐riparian forest ecosystems, but their ecological role is not clearly understood. 2. We studied a population of black‐bellied salamanders (Desmognathus quadramaculatus) at a headwater stream in the southern Appalachian Mountains using radio‐telemetry and mark‐recapture methods. The length and area of headwater streams in the region were estimated using GIS. 3. Home ranges of radio‐tracked salamanders were relatively small (mean = 1.06 m²). Adult salamanders in our telemetry study inhabited edge microhabitats significantly more often than either stream or riparian microhabitats, and the same trend was observed in the mark‐recapture study. 4. We estimated the population density at this site to be 11 294 salamanders ha^?1, amounting to 99.30 kg ha^?1 of biomass, an estimate that is six times greater than reported in previous studies. The majority of this biomass was found within the stream, but 22% was found in the surrounding riparian habitat more than 1 m from the stream. Using headwater stream length and area estimates, we extrapolated biomass estimates for black‐bellied salamanders inhabiting stream and riparian microhabitats across the study region. 5. We report one of the largest estimates of secondary consumer biomass for a headwater ecosystem, attesting to the overall productivity of headwater streams. Headwaters are known to be important for ecological and ecosystem processes and our biomass estimates suggest that salamanders are a critical component to these systems.