Thylakoid Membrane Reduction Affects the Photosystem Stoichiometry in the Cyanobacterium Synechocystis sp. PCC 6803

Biogenesis of thylakoid membranes in both chloroplasts and cyanobacteria is largely not understood today. The vesicle-inducing protein in plastids 1 (Vipp1) has been suggested to be essential for thylakoid membrane formation in Arabidopsis (Arabidopsis thaliana), as well as in the cyanobacterium Synechocystis sp. PCC 6803, although its exact physiological function remains elusive so far. Here, we report that, upon depletion of Vipp1 in Synechocystis cells, the number of thylakoid layers in individual Synechocystis cells decreased, and that, in particular, the content of photosystem I (PSI) complexes was highly diminished in thylakoids. Furthermore, separation of native photosynthetic complexes indicated that PSI trimers are destabilized and the monomeric species is enriched. Therefore, depletion of thylakoid membranes specifically affects biogenesis and/or stabilization of PSI in cyanobacteria.In chloroplasts and cyanobacteria the energy transfer between PSI and PSII is regulated in a light-dependent manner (for a recent review, see Kramer et al., 2004). The two photosystems are connected by the cytochrome b₆f complex, and electron transfer from PSII via the cytochrome b₆f complex to PSI is believed to be regulated by the redox state of the plastoquinol pool potentially also involving the cytochrome b₆f complex (Fujita et al., 1987; Murakami and Fujita, 1993; Schneider et al., 2001, 2004; Pfannschmidt, 2003; Volkmer et al., 2007). Transfer of light energy to the two photosystems is mediated by light-harvesting complexes, and in cyanobacteria light is harvested by the soluble extramembranous phycobilisomes. The efficient energy transfer to PSI and PSII has to be balanced to synchronize the function of the two photosystems. In response to changing light intensities and qualities, energy coupling between the phycobilisomes and the photosystems changes, which allows a rapid adjustment of light absorbance by the individual photosystems. Furthermore, besides this short-term adaptation mechanism, it has been shown in many studies that on a longer term in cyanobacteria the ratio of the two photosystems changes depending on the light conditions (Manodori and Melis, 1986; Murakami and Fujita, 1993; Murakami et al., 1997). Upon shifting cyanobacterial cells from low-light to high-light growth conditions, the PSI-to-PSII ratio decreases due to selective suppression of the amount of functional PSI. In recent years, some genes have already been identified that are involved in this regulation of the photosystem stoichiometry (Hihara et al., 1998; Sonoike et al., 2001; Fujimori et al., 2005; Ozaki et al., 2007).Whereas in chloroplasts of higher plants and green algae the amounts of the two photosystems change in response to changing light conditions (Melis, 1984; Chow et al., 1990; Smith et al., 1990; Kim et al., 1993), it has already been noted a long time ago that the chloroplast ultrastructure also adapts to high-light and low-light conditions (Melis, 1984). Chloroplasts of plants grown under low light or far-red light have more thylakoid membranes than chloroplasts of plants grown under high light or blue light (Anderson et al., 1973; Lichtenthaler et al., 1981; Melis and Harvey, 1981). There appears to be a direct correlation between the chlorophyll content and the amount of thylakoids per chloroplast because light harvesting is increased by enhanced chlorophyll and thylakoid membrane content per chloroplast. Thus, chloroplasts adapt to high light both by a reduction of thylakoid membranes and by a decrease in the PSI-to-PSII ratio.Thylakoid membranes are exclusive features of both cyanobacteria and chloroplasts, and it still remains mysterious how formation of thylakoid membranes is organized. Many cellular processes, like lipid biosynthesis, membrane formation, protein synthesis in the cytoplasm and/or at a membrane, protein transport, protein translocation, and protein folding have to be organized and aligned for formation of internal thylakoid membranes. The recent observation that deletion of the vipp1 gene in Arabidopsis (Arabidopsis thaliana) results in complete loss of thylakoid membranes has indicated that Vipp1 is involved in biogenesis of thylakoid membranes. Further analysis has suggested that Vipp1 could be involved in vesicle trafficking between the inner envelope and the thylakoid membrane of chloroplasts (Kroll et al., 2001). Because of this, the protein was named Vipp1, for vesicle-inducing protein in plastids 1. Depletion of Vipp1 strongly affected the ability of cyanobacterial cells to form proper thylakoid membranes (Westphal et al., 2001) and, consequently, also in cyanobacteria Vipp1 appears to be involved in formation of thylakoid membranes. A Vipp1 depletion strain of Arabidopsis is deficient in photosynthesis, although the defect could not be assigned to a deficiency of a single photosynthetic complex, but appeared to be caused by dysfunction of the entire photosynthetic electron transfer chain (Kroll et al., 2001). Therefore, depletion of Vipp1 in Arabidopsis seems to affect thylakoid membrane formation rather than the assembly of thylakoid membrane protein complexes (Aseeva et al., 2007). However, for cyanobacteria, it is not clear yet how diminishing the amount of thylakoid membrane layers would affect the amount and stoichiometry of the two photosystems.Here, we present the generation and characterization of a Vipp1 depletion strain of the cyanobacterium Synechocystis sp. PCC 6803. Upon depletion of Vipp1, a decrease in thylakoid membrane pairs in the generated mutant strain and, furthermore, a significant decrease in active PSI centers was observed. Moreover, trimerization of PSI also appeared to be impaired in the mutant strain. These results suggest that thylakoid membrane perturbations caused by the Vipp1 depletion directly affects PSI assembly and stability in cyanobacterial thylakoid membranes.     

Refolding and Enzyme Kinetic Studies on the Ferrochelatase of the Cyanobacterium Synechocystis sp. PCC 6803

Heme is a cofactor for proteins participating in many important cellular processes, including respiration, oxygen metabolism and oxygen binding. The key enzyme in the heme biosynthesis pathway is ferrochelatase (protohaem ferrolyase, EC 4.99.1.1), which catalyzes the insertion of ferrous iron into protoporphyrin IX. In higher plants, the ferrochelatase enzyme is localized not only in mitochondria, but also in chloroplasts. The plastidic type II ferrochelatase contains a C-terminal chlorophyll a/b (CAB) motif, a conserved hydrophobic stretch homologous to the CAB domain of plant light harvesting proteins and light-harvesting like proteins. This type II ferrochelatase, found in all photosynthetic organisms, is presumed to have evolved from the cyanobacterial ferrochelatase. Here we describe a detailed enzymological study on recombinant, refolded and functionally active type II ferrochelatase (FeCh) from the cyanobacterium Synechocystis sp. PCC 6803. A protocol was developed for the functional refolding and purification of the recombinant enzyme from inclusion bodies, without truncation products or soluble aggregates. The refolded FeCh is active in its monomeric form, however, addition of an N-terminal His₆-tag has significant effects on its enzyme kinetics. Strikingly, removal of the C-terminal CAB-domain led to a greatly increased turnover number, k_cat, compared to the full length protein. While pigments isolated from photosynthetic membranes decrease the activity of FeCh, direct pigment binding to the CAB domain of FeCh was not evident.     

Salt-dependent protein phosphorylation in the cyanobacterium Synechocystis PCC 6803

Abstract We have isolated a Bradyrhizobium japonicum USDA 438 (serogroup 123) mutant which has the ability to form nodules on serogroup 123 nodulation-restricting plant introduction genotypes and soybeans containing the Rj4 allele. The identity of the mutant was confirmed by using a serocluster 123-specific DNA probe, restriction fragment length polymorphism analysis, and serogroup-specific fluorescent antibodies. While the mutant contains Tn 5 inserted into a cryptic, non nod gene-containing locus, site-directed mutagenesis and complementation studies indicated that the transposon is not responsible for host-range extension. The mutant and the wild-type parent had the same chromatographic profiles of [¹⁴C]acetate-labelled extracellular B. japonicum nod factors.     

Chromophore-apoprotein interactions in Synechocystis sp. PCC6803 phytochrome Cph1

The secondary, tertiary, and quaternary structures of the Synechocystis Cph1 phytochrome were investigated by absorption and circular dichroism spectroscopy, size exclusion chromatography, and limited proteolysis. The Cph1 protein was coexpressed with a bacterial thioredoxin in Escherichia coli, reconstituted in vitro with tetrapyrrole chromophores, and purified by chitin affinity chromatography. The resultant Cph1 holoproteins were essentially pure and had the specific absorbance ratio (SAR) of 0.8-0.9. Circular dichroism spectroscopy and limited proteolysis showed that the chromophore binding induced marked conformational changes in the Cph1 protein. The alpha-helical content increased to 42-44% in the holoproteins from 37% in the apoprotein. However, no significant difference in the secondary structure was detected between the Pr and Pfr forms. The tertiary structure of the Cph1 apoprotein appeared to be relatively flexible but became more compact and resistant to tryptic digestion upon chromophore binding. Interestingly, a small chromopeptide of about 30 kDa was still predominant even after longer tryptic digestion. The N-terminal location of this chromopeptide was confirmed by expression in E. coli and in vitro reconstitution with chromophores of the 32.5 kDa N-terminal fragment of the Cph1 protein. This chromopeptide was fully photoreversible with the spectral characteristic similar to that of the full-size Cph1 protein. The Cph1 protein forms dimers through the C-terminal region. These results suggest that the prokaryotic Cph1 phytochrome shares the structural and conformational characteristics of plant phytochromes, such as the two-domain structure consisting of the relatively compact N-terminal and the relatively flexible C-terminal regions, in addition to the chromophore-induced conformational changes.     

The atp1 and atp2 operons of the cyanobacterium Synechocystis sp. PCC 6803

The two operons atp1 and atp2, encoding the subunits of the F_OF₁ ATP-synthase, have been cloned and sequenced from the cyanobacterium Synechocystis sp. PCC 6803. The organization of the different genes in the operons have been found to resemble that of the cyanobacteria Synechococcus sp. PCC 6301 and Anabaena sp. PCC 7120. The Synechocystis F_OF₁ ATP-synthase has nine subunits. A tenth open reading frame with unknown function was detected at the 5 end of atp1, coding for a putative gene product similar to uncI in Escherichia coli.A promoter structure was inferred for the Synechocystis atp operons and compared to other known promoters of cyanobacteria. Even though the operon structure of atp1 and atp2 in Synechocystis resembles the corresponding operons of Synechococcus, the amino acid sequences of individual gene products show marked differences. Genetic distances between cyanobacterial genes and genes for ATP-synthase subunits from other species have been calculated and compiled into evolutionary trees.     

The three-dimensional structure of the cyanobacterium Synechocystis sp. PCC 6803

To advance our knowledge of the model cyanobacterium Synechocystis sp. PCC 6803 we investigated the three-dimensional organization of the cytoplasm using standard transmission electron microscopy and electron tomography. Electron tomography allows a resolution of ~5 nm in all three dimensions, superior to the resolution of most traditional electron microscopy, which is often limited in part by the thickness of the section (70 nm). The thylakoid membrane pairs formed layered sheets that followed the periphery of the cell and converged at various sites near the cytoplasmic membrane. At some of these sites, the margins of thylakoid membranes associated closely along the external surface of rod-like structures termed thylakoid centers, which sometimes traversed nearly the entire periphery of the cell. The thylakoid membranes surrounded the central cytoplasm that contained inclusions such as ribosomes and carboxysomes. Lipid bodies were dispersed throughout the peripheral cytoplasm and often juxtaposed with cytoplasmic and thylakoid membranes suggesting involvement in thylakoid maintenance or biogenesis. Ribosomes were numerous and mainly located throughout the central cytoplasm with some associated with thylakoid and cytoplasmic membranes. Some ribosomes were attached along internal unit-membrane-like sheets located in the central cytoplasm and appeared to be continuous with existing thylakoid membranes. These results present a detailed analysis of the structure of Synechocystis sp. PCC 6803 using high-resolution bioimaging techniques and will allow future evaluation and comparison with gene-deletion mutants.Electronic Supplementary Material Supplementary material is available for this article at and is accessible for authorized users.     

State 1-state 2 adaptation in the cyanobacteria Synechocystis PCC 6714 wild type and Synechocystis PCC 6803 wild type and phycocyanin-less mutant

The mechanism of excitation energy distribution between the two photosystems (state transitions) is studied in Synechocystis 6714 wild type and in wild type and a mutant lacking phycocyanin of Synechocystis 6803. (i) Measurements of fluorescence transients and spectra demonstrate that state transitions in these cyanobacteria are controlled by changes in the efficiency of energy transfer from PS II to PS I (spillover) rather than by changes in association of the phycobilisomes to PS II (mobile antenna model). (ii) Ultrastructural study (freeze-fracture) shows that in the mutant the alignment of the PS II associated EF particles is prevalent in state 1 while the conversion to state 2 results in randomization of the EF particle distribution, as already observed in the wild type (Olive et al. 1986). In the mutant, the distance between the EF particle rows is smaller than in the wild type, probably because of the reduced size of the phycobilisomes. Since a parallel increase of spillover is not observed we suggest that the probability of excitation transfer between PS II units and between PS II and PS I depends on the mutual orientation of the photosystems rather than on their distance. (iii) Measurements of the redox state of the plastoquinone pool in state 1 obtained by PS I illumination and in state 2 obtained by various treatments (darkness, anaerobiosis and starvation) show that the plastoquinone pool is oxidized in state 1 and reduced in state 2 except in starved cells where it is still oxidized. In the latter case, no important decrease of ATP was observed. Thus, we propose that in Synechocystis the primary control of the state transitions is the redox state of a component of the cytochrome b ₆/f complex rather than that of the plastoquinone pool.Abbreviations DCCD dicyclohexylcarbodiimide - DCMU 3-(3,4-dichlorophenyl)-1,1-dimethylurea - DBMIB 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone - EF exoplasmic face - PQ plasto-quinone - PS photosystem - PBS phycobilisome     

The Redox Potential of the Plastoquinone Pool of the Cyanobacterium Synechocystis Species Strain PCC 6803 Is under Strict Homeostatic Control

A method is presented for rapid extraction of the total plastoquinone (PQ) pool from Synechocystis sp. strain PCC 6803 cells that preserves the in vivo plastoquinol (PQH₂) to -PQ ratio. Cells were rapidly transferred into ice-cold organic solvent for instantaneous extraction of the cellular PQ plus PQH₂ content. After high-performance liquid chromatography fractionation of the organic phase extract, the PQH₂ content was quantitatively determined via its fluorescence emission at 330 nm. The in-cell PQH₂-PQ ratio then followed from comparison of the PQH₂ signal in samples as collected and in an identical sample after complete reduction with sodium borohydride. Prior to PQH₂ extraction, cells from steady-state chemostat cultures were exposed to a wide range of physiological conditions, including high/low availability of inorganic carbon, and various actinic illumination conditions. Well-characterized electron-transfer inhibitors were used to generate a reduced or an oxidized PQ pool for reference. The in vivo redox state of the PQ pool was correlated with the results of pulse-amplitude modulation-based chlorophyll a fluorescence emission measurements, oxygen exchange rates, and 77 K fluorescence emission spectra. Our results show that the redox state of the PQ pool of Synechocystis sp. strain PCC 6803 is subject to strict homeostatic control (i.e. regulated between narrow limits), in contrast to the more dynamic chlorophyll a fluorescence signal.The photosynthetic apparatus of oxygenic phototrophs consists of two types of photosynthetic reaction centers: PSII and PSI. Both photosystems are connected in series, with electrons flowing from PSII toward PSI through an intermediate electron transfer chain, which comprises the so-called plastoquinone (PQ) pool, plastocyanin and/or cytochrome c₅₅₃, and the cytochrome b₆f complex. The redox potential of the PQ pool is clamped by the relative rates of electron release into and uptake from this pool. Within the PSII complex, electrons are extracted from water at the lumenal side of the thylakoid membrane and transferred to the primary accepting quinone (Q_A) at the stromal side. The electron is subsequently transferred to a PQ molecule in the secondary accepting quinone (Q_B) of PSII. The intermediate Q_B semiquinone, which is formed accordingly, is stable in the Q_B site for several seconds (Diner et al., 1991; Mitchell, 1993) and subsequently can be reduced to plastoquinol (PQH₂). The midpoint potential of Q_A reduction is approximately −100 mV (Krieger-Liszkay and Rutherford, 1998; Allakhverdiev et al., 2011), whereas the corresponding midpoint potential of the Q_B semiquinone is close to zero (Nicholls and Ferguson, 2013). PQH₂ equilibrates with the PQ pool in the thylakoid membranes, which has a size that is approximately 1 order of magnitude larger than the number of PSII reaction centers (Melis and Brown, 1980; Aoki and Katoh, 1983).PQ is a lipophilic, membrane-bound electron carrier, with a midpoint potential of +80 mV (Okayama, 1976), that can accept two electrons and two protons to form PQH₂ (Rich and Bendall, 1980). PQH₂ can donate both electrons to the cytochrome b₆f complex, one to low-potential cytochrome b₆, by which reduced high-potential cytochrome b₆ is formed, and one to the cytochrome f moiety on the lumenal side of the thylakoid membrane, where the two protons are released. High-potential cytochrome b₆ then donates an electron back to PQ on the stromal side of the membrane, rendering a semiquinone in the PQ-binding pocket on the cytoplasmic face of the b₆f complex ready as an acceptor of another electron from PSII, and reduced cytochrome f feeds an electron to a water-soluble electron carrier (i.e. either plastocyanin or cytochrome c₅₅₃) for subsequent transfer to the reaction center of PSI or to cytochrome c oxidase, respectively (Rich et al., 1991; Geerts et al., 1994; Schubert et al., 1995; Paumann et al., 2004; Mulkidjanian, 2010).Electron transfer through the cytochrome b₆f complex proceeds according to the Q-cycle mechanism (Rich et al., 1991). As a result, maximally two protons from the stroma are released into the lumen per electron transferred. This electrochemical proton gradient can be used for the synthesis of ATP by the ATP synthase complex (Walker, 1998). In PSI, another transthylakoid membrane charge separation process is energized by light. Electron transfer within the PSI complex involves iron-sulfur clusters and quinones and leads to the reduction of ferredoxin, the reduced form of which serves as the electron donor for NADPH by the ferredoxin:NADP+ oxidoreductase enzyme (van Thor et al., 1999). The ATP and NADPH generated this way are used for CO₂ fixation in a mutual stoichiometry that is close to the stoichiometry at which these two energy-rich compounds are formed at the thylakoid membrane. Normally, this ratio is ATP:NADPH = 3:2 (Behrenfeld et al., 2008).Photosynthetic and respiratory electron transport in cyanobacteria share a single PQ pool (Aoki and Katoh, 1983; Aoki et al., 1983; Matthijs et al., 1984; Scherer, 1990). Respiratory electron transfer provides cells the ability to form ATP in the dark, but this ability is not limited to those conditions. Transfer of electrons into the PQ pool is the result of the joint activity of PSII, respiratory dehydrogenases [in particular those specific for NAD(P)H and succinate], and cyclic electron transport around PSI (Mi et al., 1995; Cooley et al., 2000; Howitt et al., 2001;Yeremenko et al., 2005), whereas oxidation of PQH₂ is catalyzed by the PQH₂ oxidase, the cytochrome b₆f complex, the respiratory cytochrome c oxidase (Nicholls et al., 1992; Pils and Schmetterer, 2001; Berry et al., 2002), and possibly plasma terminal oxidase (Peltier et al., 2010). Multiples of these partial reactions can proceed simultaneously, including respiratory electron transfer during illumination (Schubert et al., 1995), which includes oxygen uptake through a Mehler-like reaction (Helman et al., 2005; Allahverdiyeva et al., 2013).Because of its central location between the two photosystems, the redox state of the PQ pool has been identified as an important parameter that can signal photosynthetic imbalances (Mullineaux and Allen, 1990; Allen, 1995; Ma et al., 2010; Allen et al., 2011). Yet, an accurate estimation of the in vivo redox state of this pool has not been reported in cyanobacteria so far. Instead, the redox state of the PQ pool is widely assumed to be reflected in, or related to, the intensity of the chlorophyll a fluorescence emissions (Prasil et al., 1996; Yang et al., 2001; Gotoh et al., 2010; Houyoux et al., 2011). Imbalance in electron transport through the two photosystems may lead to a loss of excitation energy and, hence, to a loss of chlorophyll a fluorescence emission (Schreiber et al., 1986). Therefore, patterns of chlorophyll a fluorescence (pulse-amplitude modulated [PAM] fluorimetry; Baker, 2008) have widely been adopted for the analysis of (un)balanced photosynthetic electron transfer and, by inference, for indirect recording of the redox state of the PQ pool. However, the multitude of electron transfer pathways in the thylakoid membranes of cyanobacteria (see above) makes it much more complex to explain PAM signals in these organisms than in chloroplasts (Campbell et al., 1998). Additional regulatory mechanisms of nonphotochemical quenching, via the xanthophyll cycle in chloroplasts (Demmig-Adams et al., 2012) and the orange carotenoid protein (Kirilovsky and Kerfeld, 2012) in cyanobacteria, and energy redistribution via state transitions (Allen, 1995; Van Thor et al., 1998) complicate such comparisons even further.Several years ago, an HPLC-based technique was developed for the detection of the redox state of PQH₂ in isolated thylakoids (Kruk and Karpinski, 2006), but these results have neither been related to physiological conditions nor to the results of chlorophyll a fluorescence measurements. In this report, we describe an adaptation of this method with elements of a method for estimation of the redox state of the ubiquinone pool in Escherichia coli (Bekker et al., 2007). This modified method allows for reliable measurements of the redox state of the PQ pool of Synechocystis sp. strain PCC 6803 under physiologically relevant conditions. The method uses rapid cell lysis in an organic solvent to arrest all physiological processes, followed by extraction and identification of PQH₂ by HPLC separation with fluorescence detection. Next, we manipulated the redox state of the PQ pool with various redox-active agents, with inhibitors of photosynthetic electron flow, and by illumination with light specific for either PSII or PSI. The measured redox state of the PQ pool was then related to the chlorophyll a fluorescence signal and 77 K fluorescence emission spectra of cell samples taken in parallel and to oxygen-exchange rates measured separately. These experiments reveal that, despite highly fluctuating conditions of photosynthetic and respiratory electron flow, a remarkably stable redox state of the PQ pool is maintained. This homeostatically regulated redox state correlates poorly in many of the conditions tested with the more dynamic signal of chlorophyll a fluorescence emission, as measured with PAM fluorimetry. The latter signal only reflects the redox state of Q_A and not that of the PQ pool.     

Biogenesis of chlorophyll-binding proteins under iron stress in Synechocystis sp. PCC 6803

The biogenesis of chlorophyll-binding proteins under iron stress has been investigated in vivo in a chlN deletion mutant of Synechocystis sp. PCC 6803. The chlN gene encodes one subunit of the light-independent protochlorophyllide reductase. The mutant is unable to synthesis chlorophyll in darkness, causing chlorophyll biosynthesis to become light dependent. When the mutant was propagated in darkness, essentially no chlorophyll and photosystems were detected. Upon return of the chlN deletion mutant to light, 77 K fluorescence emission spectra and oxygen evolution of greening cells under iron-sufficient or -deficient conditions were measured. The gradual blue shift of the photosystem I (PS I) peak upon greening under iron stress suggested the structural alteration of newly synthesized PS I. Furthermore, the rate of biogenesis of PS II was delayed under iron stress, which might be due to the presence of IsiA.     

Expression of holo-proteorhodopsin in Synechocystis sp. PCC 6803

Retinal-based photosynthesis may contribute to the free energy conversion needed for growth of an organism carrying out oxygenic photosynthesis, like a cyanobacterium. After optimization, this may even enhance the overall efficiency of phototrophic growth of such organisms in sustainability applications. As a first step towards this, we here report on functional expression of the archetype proteorhodopsin in Synechocystis sp. PCC 6803. Upon use of the moderate-strength psbA2 promoter, holo-proteorhodopsin is expressed in this cyanobacterium, at a level of up to 10⁵ molecules per cell, presumably in a hexameric quaternary structure, and with approximately equal distribution (on a protein-content basis) over the thylakoid and the cytoplasmic membrane fraction. These results also demonstrate that Synechocystis sp. PCC 6803 has the capacity to synthesize all-trans-retinal. Expressing a substantial amount of a heterologous opsin membrane protein causes a substantial growth retardation Synechocystis, as is clear from a strain expressing PROPS, a non-pumping mutant derivative of proteorhodopsin. Relative to this latter strain, proteorhodopsin expression, however, measurably stimulates its growth.     

Role of HoxE subunit in Synechocystis PCC6803 hydrogenase

Cyanobacterial NAD(P)(+)-reducing reversible hydrogenases comprise five subunits. Four of them (HoxF, HoxU, HoxY, and HoxH) are also found in the well-described related enzyme from Ralstonia eutropha. The fifth one (HoxE) is not encoded in the R. eutropha genome, but shares homology with the N-terminal part of R. eutropha HoxF. However, in cyanobacteria, HoxE contains a 2Fe-2S cluster-binding motif that is not found in the related R. eutropha sequence. In order to obtain some insights into the role of HoxE in cyanobacteria, we deleted this subunit in Synechocystis PCC6803. Three types of interaction of the cyanobacterial hydrogenase with pyridine nucleotides were tested: (a) reductive activation of the NiFe site, for which NADPH was found to be more efficient than NADH; (b) H(2) production, for which NADH appeared to be a more efficient electron donor than NADPH; and (c) H(2) oxidation, for which NAD(+) was a much better electron acceptor than NADP(+). Upon hoxE deletion, the Synechocystis hydrogenase active site remained functional with artificial electron donors or acceptors, but the enzyme became unable to catalyze H(2) production or uptake with NADH/NAD(+). However, activation of the electron transfer-independent H/D exchange reaction by NADPH was still observed in the absence of HoxE, whereas activation of this reaction by NADH was lost. These data suggest different mechanisms for diaphorase-mediated electron donation and catalytic site activation in cyanobacterial hydrogenase.     

Characterization of the Cph1 holo-phytochrome from Synechocystis sp. PCC 6803.

The cph1 gene from the unicellular cyanobacterium Synechoycstis sp. PCC 6803 encodes a protein with the characteristics of plant phytochromes and histidine kinases of two-component phospho-relay systems. Spectral and biochemical properties of Cph1 have been intensely studied in vitro using protein from recombinant systems, but virtually nothing is known about the situation in the natural host. In the present study, His6-tagged Cph1 was isolated from Synechocystis cells. The cph1-his gene was expressed either under the control of the natural cph1 promoter or over-expressed using the strong promoter of the psbA2 gene. Upon purification with nickel affinity chromatography, the presence of Cph1 in extracts was confirmed by immunoblotting and Zn2+-induced fluorescence. The Cph1 extracts exhibited a red/far-red photoactivity characteristic of phytochromes. Difference spectra were identical with those of the phycocyanobilin adduct of recombinant Cph1, implying that phycocyanobilin is the chromophore of Cph1 in Synechocystis.     

The Proteome and Lipidome of Synechocystis sp. PCC 6803 Cells Grown under Light-Activated Heterotrophic Conditions

Cyanobacteria are photoautotrophic prokaryotes with a plant-like photosynthetic machinery. Because of their short generation times, the ease of their genetic manipulation, and the limited size of their genome and proteome, cyanobacteria are popular model organisms for photosynthetic research. Although the principal mechanisms of photosynthesis are well-known, much less is known about the biogenesis of the thylakoid membrane, hosting the components of the photosynthetic, and respiratory electron transport chain in cyanobacteria. Here we present a detailed proteome analysis of the important model and host organism Synechocystis sp. PCC 6803 under light-activated heterotrophic growth conditions. Because of the mechanistic importance and severe changes in thylakoid membrane morphology under light-activated heterotrophic growth conditions, a focus was put on the analysis of the membrane proteome, which was supported by a targeted lipidome analysis. In total, 1528 proteins (24.5% membrane integral) were identified in our analysis. For 641 of these proteins quantitative information was obtained by spectral counting. Prominent changes were observed for proteins associated with oxidative stress response and protein folding. Because of the heterotrophic growth conditions, also proteins involved in carbon metabolism and C/N-balance were severely affected. Although intracellular thylakoid membranes were significantly reduced, only minor changes were observed in their protein composition. The increased proportion of the membrane-stabilizing sulfoqinovosyl diacyl lipids found in the lipidome analysis, as well as the increased content of lipids with more saturated acyl chains, are clear indications for a coordinated synthesis of proteins and lipids, resulting in stabilization of intracellular thylakoid membranes under stress conditions.Cyanobacteria are a widespread group of photoautotrophic organisms, which significantly contribute to global carbon fixation. Cyanobacteria and plant chloroplasts share a common ancestor, and thus cyanobacteria have a plant-like photosynthetic metabolism (1, 2). Consequently, they are established model organisms for studies, aiming to elucidate photosynthetic mechanisms. Both, chloroplasts and cyanobacteria, have two internal membrane systems, that is, the inner envelope and the cytoplasmic membrane (CM)¹ in chloroplasts or cyanobacteria, respectively, as well as the thylakoid membrane (TM) system, which harbors the complexes of the photosynthetic electron transfer chain (3, 4). The photosynthetic electron transfer chain typically consists of the three membrane integral protein complexes: photosystem I (PS I), photosystem II (PS II), and the cytochrome b₆f complex, as well as of the soluble electron carriers plastoquinone and plastocyanin (5, 6). In the end, reduction equivalents are produced, which are used for CO₂-fixation (7). However, besides the ability to grow photoautotrophically, some cyanobacteria are also capable to grow photoheterotrophically, where they use reduced organic compounds as carbon source, or even completely heterotrophically by using reduced organic compounds as carbon and energy source (8). The well-characterized cyanobacterium Synechocystis sp. PCC 6803 (9) (hereafter: Synechocystis) can grow in darkness under light-activated heterotrophic growth (LAHG) conditions by using glucose as carbon and energy source (10). Enhanced sugar catabolism in LAHG cultures is, for example, reflected by increased activities of enzymes involved in sugar catabolism, such as glucokinase and pyruvate kinase (11). The effects of LAHG conditions on the abundance of soluble Synechocystis proteins have been analyzed previously, although only 23 proteins with a significantly altered expression level (LAHG versus autotrophic growth) have been described. This study has e.g. indicated that under LAHG conditions glucose is mainly degraded by the oxidative pentose phosphate (OPP) pathway (12). The histidine kinase 8 (Hik8) as well as the sigma factor E (SigE), regulating the expression of sugar-degrading genes, were shown to be essential for LAHG (13, 14).Although readjustments of the cellular energy metabolism are important, the impact on the cellular membrane architecture is more striking. The ability of Synechocystis to grow under LAHG conditions has been used recently to analyze TM formation within cyanobacterial cells (15). Although dark-adapted Synechocystis cells have no active PS II complex, complete photosynthetic activity is regained within 24 h after transferring dark-adapted cells into the light. Furthermore, reappearance of photosynthetic electron transfer processes is coupled to the formation of internal TMs. However, it is essentially still completely enigmatic how the formation of internal TM is controlled, although some proteins have been suggested to be involved. These proteins include the vesicle inducing protein in plastids 1 (Vipp1), DnaK proteins, a prohibitin-like protein, as well as the YidC protein, a membrane protein integrase (16–19). Nevertheless, although some proteins have been suggested to be more directly involved in TM formation, the stability of the TM is also globally affected indirectly by pathways, which control the biogenesis of lipids and/or cofactors, and mutants defective in synthesis of chlorophyll or of the membrane lipid phosphatidylglycerol (PG) have severely reduced TM systems (20, 21).In the present work, we combined prefractioning of Synechocystis cellular membranes with a global proteome and lipidome analysis, to shift the analytical focus toward the rearrangement of the internal thylakoid membrane system observed in Synechocystis cells under LAHG conditions, with a significantly larger coverage of the proteome than in former studies. Furthermore, also the effect on Synechocystis lipids was analyzed in a targeted mass spectrometric approach, revealing significant adjustment of fatty acid saturation in response to the LAHG conditions.     

Genomic analysis of parallel-evolved cyanobacterium Synechocystis sp. PCC 6803 under acid stress

Photosynthesis Research - Experimental evolution is a powerful tool for clarifying phenotypic and genotypic changes responsible for adaptive evolution. In this study, we isolated acid-adapted...     

Accumulation of poly-beta-hydroxybutyrate in cyanobacterium Synechocystis sp. PCC6803

Accumulation of poly-beta-hydroxybutyrate (PHB) by photoautotrophic microorganisms makes it possible to reduce the production cost of PHB. The Synechocystis sp. PCC6803 cells grown in BG11 medium under balanced, nitrogen-starved or phosphorus-starved conditions were observed by transmission electron microscope. Many electron-transparent granules in the nitrogen-starved cells had a diameter up to 0.8 micron. In contrast, the number of granules in the normally cultured cells decreased obviously and only zero to three much smaller granules were in each cell. These granules were similar to those in bacteria capable of synthesizing PHB. They were proved to be PHB by gas chromatography after subjecting the cells to methanolysis. Effects of glucose as carbon source and light intensity on PHB accumulation in Synechocystis sp. PCC6803 under nitrogen-starved cultivation were further studied. Glucose and illumination promoted cell growth but did not favor PHB synthesis. After 7 days of growth under nitrogen-starved photoautotrophic conditions, the intracellular level of PHB was up to 4.1% of cellular dry weight and the PHB concentration in the culture broth was 27 mg/l.     

Mutants of Synechocystis PCC6803 Defective in Inorganic Carbon Transport

Eighty mutants of Synechocystis PCC6803 that require high CO₂ for growth were examined with a mass spectrometer for their ability to take up CO₂ in the light. Two of these mutants (type A) did not show any CO₂ uptake while the rest of the mutants (type B) took up CO₂ actively. Type A mutants (RKa and RKb) and one type B mutant (RK11) were partially characterized. At 3% CO₂, growth rates of the mutants and the wild type (WT) were similar. Under air levels of CO₂, growth of RKa and RKb was very slow, and RK11 did not grow at all. The photosynthetic affinities for inorganic carbon (C_i) in these three mutants were about 100 times lower than the affinity in WT. The following characteristics of type A mutants indicated that the mutants have a defect in their CO₂-transport system: (a) the activity of ¹³C¹⁸O₂ uptake in RKa and RKb in the light was less than 5% the activity in WT, and (b) each mutant had only a low level of activity of ¹⁴CO₂ uptake as measured by the method of silicone oil-filtering centrifugation. The HCO₃⁻-transport system was also impaired in these mutants. The activity of H¹⁴CO₃⁻ uptake was negligibly low in RKb and was one-third the activity of WT in RKa. On the other hand, the type B mutant, RK11, transported CO₂ and HCO₃⁻ into the intracellular C_i pool as actively as WT but was unable to utilize it for photosynthesis. Complementation analysis of type A mutants indicated that RKa and RKb have mutations in different regions of the genome. These results suggested that at least two kinds of proteins are involved in the C_i-transport system.     

Reduction of Photoautotrophic Productivity in the Cyanobacterium Synechocystis sp. Strain PCC 6803 by Phycobilisome Antenna Truncation

Truncation of the algal light-harvesting antenna is expected to enhance photosynthetic productivity. The wild type and three mutant strains of Synechocystis sp. strain 6803 with a progressively smaller phycobilisome antenna were examined under different light and CO(2) conditions. Surprisingly, such antenna truncation resulted in decreased whole-culture productivity for this cyanobacterium.     

Growth kinetics and mathematical modeling of Synechocystis sp. PCC 6803 under flashing light

In photobioreactors and natural systems, microalgae are subjected to rapidly changing light intensities (LI) due to light attenuation and mixing. A controlled way to study the effect of rapidly changing LI is to subject cultures to flashing light. In this study, series of flashing-light experiments were conducted using Synechocystis sp. PCC6803 with constant overall average LI of approximately 84 μmol·m⁻²·s⁻¹ and relative times in the light and dark varied. The results were also compared with simulated results using a mathematical model including an absorbed pool of light energy, photoacclimation, and photoinhibition. With equal time in light and dark, the specific growth rate (μ) systematically decreased with increasing light duration, and µ decreased further when the ratio of light to dark was decreased. The model captured both trends with the mechanistic explanation that when the light duration was very short the changes in the pool of absorbed LI were smoothed out across the light and dark periods, whereas longer durations caused the biomass to experience discrete light and dark conditions that lead to reduced light absorption, more energy loss to nonphotochemical quenching, and more photodamage. These growth effects were accentuated as the ratio of light to dark decreased.     

Proteomic analysis of heterotrophy in Synechocystis sp. PCC 6803

To provide an insight into the heterotrophic metabolism of cyanobacteria, a proteomic approach has been employed with the model organism Synechocystis sp. PCC 6803. The soluble proteins from Synechocystis grown under photoautotrophic and light-activated heterotrophic conditions were separated by 2-DE and identified by MALDI-MS or LC-MS/MS analysis. 2-DE gels made using narrow- and micro-range IPG strips allowed quantitative comparison of more than 900 spots. Out of 67 abundant protein spots identified, 13 spots were increased and 9 decreased under heterotrophy, representing all the major fold changes. Proteomic alterations and activity levels of selected enzymes indicate a shift in the central carbon metabolism in response to trophic change. The significant reduction in light-saturated rate of photosynthesis as well as in the expression levels of rubisco and CO(2)-concentrating mechanism proteins under heterotrophy indicates the down-regulation of the photosynthetic machinery. Alterations in the expression level of proteins involved in carbon utilization pathways refer to enhanced glycolysis, oxidative pentose phosphate pathway as well as tricarboxylic acid cycle under heterotrophy. Proteomic evidences also suggest an enhanced biosynthesis of amino acids such as histidine and serine during heterotrophic growth.