Structures and magnetic property studies of four copper(II) and nickel(II) supramolecular complexes derived from diphenic acid constructed by C-H?π and π-π interactions

Four one-dimensional metal-organic polymers derived from diphenic acid (H₂dpa) were synthesized in the presence of auxiliary ligands, [Cu(dpa)CH₃OH](1), [Ni(dpa)CH₃OH] (2), [Cu(bipy)₂(Hdpa)₂(H₂O)₂] (3) and [Ni(bipy)₂(Hdpa)₂(H₂O)₂] (4) (bipy = 4, 4′-bipyridine). The dinuclear paddle-wheel second building units (SBUs) constructed by four dpa²⁻ ligands in complexes 1 and 2 are linked by dpa²⁻ into double chains, which are connected by C-H?π interactions forming a two-dimensional rhombic porous structure. In complexes 3 and 4, the metal ions are connected by bipy ligands, and the grid-like network was formed with the π-π interactions between the adjacent phenyl rings of Hdpa⁻. For 1 and 2, there are strong antiferromagnetic interactions within Cu-Cu and Ni-Ni dimers. It is also strong antiferromagnetic interactions between the dimmers of Cu₂ in 1, while it is weaker of those of Ni₂ in 2. Weaker antiferromagnetic interactions exist among Cu-Cu and Ni-Ni in 3 and 4, in which bipy is the effective coupling media. Thermally gravimetric analyses and differential thermal analyses indicate that the four complexes are all thermal stable.     

Square-planar copper(II) halide complexes of tridentate ligands with π-π stacking interactions and alternating short and long Cu ? Cu distances

The preparation of a new tridentate N₂O-donor ligand N-(2-pyridylmethyl)-3-methoxysalicylaldiminato (HL) is described, together with the corresponding copper(II) complexes [Cu(L)X] (X = Cl⁻, Br⁻). The compounds were characterized by elemental analysis, spectral, magnetic and crystallographic studies. In both compounds, the local molecular structure of the Cu(II) ion involves a square-planar CuN₂OX chromophore, consisting of a deprotonated phenolate oxygen, an imine nitrogen, the pyridine nitrogen and X. In the solid state, π-π stacking interactions are dominantly present, involving the pyridine and phenolate rings of neighboring molecules, which lead to a one-dimensional arrangement with alternating short and long Cu ? Cu distances of [3.720, 4.599 Å] for the bromo complex and of [3.698, 4.696 Å] for the chloro complex. The temperature-dependent magnetic measurements and EPR data of polycrystalline samples, as well as of frozen solutions in CHCl₃ show that there is no observable exchange interaction between the Cu ions. The EPR parameters (g_∥, A_∥) agree with a perfect planar geometry, just as found in the X-ray analysis.     

Cation-π and π-π stacking interactions allow selective inhibition of butyrylcholinesterase by modified quinine and cinchonidine alkaloids

Scaffold varied quaternized quinine and cinchonidine alkaloid derivatives were evaluated for their selective butyrylcholinesterase (BChE) inhibitory potential. K_i values were between 0.4–260.5 μM (non-competitive inhibition) while corresponding K_ivalues to acetylcholinesterase (AChE) ranged from 7.0–400 μM exhibiting a 250-fold selectivity for BChE.Docking arrangements (GOLD, PLANT) revealed that the extended aromatic moieties and the quaternized nitrogen of the inhibitors were responsible for specific π–π stacking and π–cation interactions with the choline binding site and the peripheral anionic site of BChE’s active site.     

Extended structures sustained by hydrogen bonding and π-π interactions: Synthesis and characterization of Cd(II) complexes with bis(benzimidazolyl) ligands

Two new Cd(II) complexes, {[Cd(C4BIm)Cl₂] · DMF}_n (1) and [Cd(HC4BIm)Cl₃] · 3H₂O (2) (C4BIm = 1,4-bis(benzimidazolyl)butane and HC4BIm = mono-protonated 1,4-bis(benzimidazolyl)butane), have been prepared and characterized spectroscopically and crystallographically. In both complexes, the Cd(II) atom exhibits distorted tetrahedral coordination geometry with CdN₂Cl₂ and CdNCl₃ in 1 and 2, respectively. Complex 1 adopts a racemic structure built up from P- and M-helical [Cd(C4BIm)Cl₂]_n chains, which are alternately linked into two-dimensional network by N-H?Cl hydrogen bonds and further stabilized by the intermolecular π?π stacking. In complexes 2, the HC4BIm is monodentate, coordinating to Cd(II) ion via the unprotonated benzimidazolyl nitrogen donor to form mononuclear [Cd(HC4BIm)Cl₃]. The mononuclear units are linked by N-H?Cl hydrogen bonds to form one-dimensional planar belts, which interact via intermolecular π?π stacking to result in three-dimensional framework.     

Silver(I) complexes of dibenzo-18-crown-6-ether having cation-π and π-π interactions

Three silver(I) complexes of dibenzo-18-crown-6-ether (DB[18]C6), [Ag(DB[18]C6)(ClO₄)](THF) (1), [Ag(DB[18]6)(CF₃SO₃)]₂(acetone)₂ (2) and [Ag(DB[18]C6)(CF₃COO)]₂(AgCF₃COO)₂ (3) have been synthesized in different solvents and characterized structurally. In each complex, silver ions prefer an octahedral coordination geometry and form close dinuclear complex with DB[18]C6 based on cation-π interaction in η²-fashion. In particular, the coordination unit involving σ bonding at an oxygen group and π-π bonding between two benzene rings is quite unique.     

Intramolecular π-π stacking interactions in aqueous solution in mixed-ligand copper(II) complexes formed by heteroaromatic amines and the nucleotide analogue 9-[2-(phosphonomethoxy)ethyl]-2-aminopurine (PME2AP), an isomer of the antivirally active 9-[2-(phosphonomethoxy)ethyl]adenine (PMEA)

The stability constants of the mixed-ligand complexes formed between Cu(Arm)²⁺, where Arm = 2,2′-bipyridine (Bpy) or 1,10-phenanthroline (Phen), and the monoanion or the dianion of 9-[2-(phosphonomethoxy)ethyl]-2-aminopurine (PME2AP), a structural isomer of the antivirally active 9-[2-(phosphonomethoxy)ethyl]adenine (PMEA), were determined by potentiometric pH titrations in aqueous solution at 25 °C and I = 0.1 M (NaNO₃). Detailed stability constant comparisons reveal that in the monoprotonated ternary Cu(Arm)(H;PME2AP)⁺ complexes the proton is at the phosphonate group and that stacking between Cu(Arm)²⁺ and H(PME2AP)⁻ plays a significant role. The ternary Cu(Arm)(PME2AP) complexes are considerably more stable than the corresponding Cu(Arm)(R-PO₃) species, where represents a phosph(on)ate ligand with a group R that is unable to participate in any kind of interaction within the complexes. The increased stability is attributed to intramolecular stack formation in the Cu(Arm)(PME2AP) complexes and also, to a smaller extent, to the formation of 5-membered chelates involving the ether-oxygen present in the residue of PME2AP²⁻. This latter interaction was previously quantified by studying ternary Cu(Arm)(PME) complexes (PME²⁻ = dianion of (phosphonomethoxy)ethane), which can form the 5-membered chelates but where no intramolecular ligand-ligand stacking is possible. Application of these results allows a quantitative analysis of the intramolecular equilibria involving three structurally different Cu(Arm)(PME2AP) species; e.g., about 5% of the Cu(Bpy)(PME2AP) system exist with the metal ion solely coordinated to the phosphonate group, 15% as a 5-membered chelate involving the ether-oxygen atom of the residue, and 80% with an intramolecular π-π stack between the purine moiety of PME2AP²⁻ and the aromatic rings of Bpy. Finally, comparison of the stacking properties of PME2AP²⁻ and PMEA²⁻ in their ternary complexes reveals that stacking is somewhat more pronounced in the Cu(Arm)(PMEA) than in the Cu(Arm)(PME2AP) species. Speculatively, this reduced stacking intensity, together with a different hydrogen-bonding pattern, could well lead to a different positioning of the 2-aminopurine moiety (compared to the adenine residue) in the active site cavity of nucleic acid polymerases and thus be responsible for the reduced antiviral activity of PME2AP compared with that of PMEA.     

Aromatic-aromatic interactions: analysis of π-π interactions in interleukins and TNF proteins

Aromatic-aromatic hydrogen bonds are important in many areas of chemistry, biology and materials science. In this study we haveanalyzed the roles played by the π-π interactions in interleukins (ILs) and tumor necrosis factor (TNF) proteins. Majority of π-πinteracting residues are conserved in ILs and TNF proteins. The accessible surface area calculations in these proteins reveal thatthese interactions might be important in stabilizing the inner core regions of these proteins. In addition to π-π interactions, thearomatic residues also form π-networks in ILs and TNF proteins. The results obtained in the present study indicate that π-πinteractions and π-π networks play important roles in the structural stability of ILs and TNF proteins.     

Synthesis and antimicrobial activity of copper(II) and manganese(II) α,ω-dicarboxylate complexes

Copper(II) ,-dicarboxylate complexes of general formulae, [Cu(O₂C(CH₂)_nCO₂)]·xH₂O, [Cu(O₂C(CH₂)_nCO₂) (phen)₂]·xH₂O and [Cu(O₂C(CH₂)_nCO₂)(bipy)_y]·xH₂O (n=1–8; y=1, 2; phen = 1,10-phenanthroline; bipy = 2,2-bipyridine) were synthesised. These copper complexes, some related manganese(II) complexes and the metal-free ligands were screened in vitro for their ability to inhibit the growth of Candida albicans. Metal-free 1,10-phenanthroline and all of the copper(II) and manganese(II) phenanthroline complexes were potent growth inhibitors, with only one bipyridine complex, [Cu(O₂C(CH₂)CO₂)(bipy)₂]·2H₂O, having moderate activity. The remaining substances were effectively inactive. Complexes which were active against C. albicans also proved effective against C. glabrata, C. tropicalis and C. kreusi with the manganese complexes retaining superior activity. For the phenanthroline complexes the active drug species is thought to be the dication [M(phen)₂(H₂O)_n]²⁺ (M = Cu, Mn). Escherichia coli and Staphylococcus aureus were resistant to all of the metal complexes and also to metal-free 1,10-phenanthroline. Only the copper phenanthroline complexes showed intermediate activity against Pseudomonas aeruginosa.     

CH/π interactions of π-system of acetylacetonato chelate ring: Comparison of CH/π interactions of Ni(II)-acetylacetonato chelate and benzene rings

The calculations have been done for CH/π interaction with π-system of Ni(II)-acetylacetonato chelate ring. The results show that there is an attractive electrostatic interaction, while dispersion component is a major source of attractive interacting energies. The interaction was compared with CH/π interaction between two benzene rings. The comparison shows that two interactions are quite similar, enabling to estimate the energy of CH/π interaction with π-system of Ni(II)-acetylacetonato chelate ring to be about 10.5 kJ/mol. The results indicate that CH/π interactions of chelate ring in various molecular systems can be as important as CH/π interactions of phenyl ring.     

Synthesis and properties of (2-pyridyl)alkylamine- and (2-pyridyl)alkylamine–amide-coordinated copper(II) complexes: Structures and non-covalent interactions

Reaction of the ligand N-methyl-N-((6-pivaloylamido-2-pyridyl)methyl)-N-(2-pyridylethyl)amine (mpppa) with equimolar amounts of [Cu(H₂O)₆][ClO₄]₂ or CuCl₂ · 2H₂O in MeCN afforded mononuclear copper(II) complexes [Cu(mpppa)][ClO₄]₂ (1) and [Cu(mpppa)Cl₂] (2). Crystal structure analysis reveals CuN₃O (two pyridyl, an aliphatic amine, and an amide oxygen) coordination in 1 and CuN₃Cl₂ (two pyridyl, an aliphatic amine, and two chlorides) coordination in 2. Crystal packing diagram of 1 reveals that one of the perchlorate counteranions provides weak coordination to copper(II) centers and in turn the copper(II) centers assume pseudo-six-coordination, generating 1D chain. Notably, one of the copper(II)-coordinated chloride ions in 2 participates in an intramolecular N–H?Cl interaction. Intermolecular C–H?Cl interactions in the solid state generate helical structure. Spectroscopic (IR, UV–Vis, and EPR) and redox properties of the two complexes have been investigated and compared.     

Binuclear metal complexes. 59. Synthesis and magnetism of dicopper(II) and copper(II)-nickel(II) complexes with N,N′-ethylenedisalicylamidatocuprate(II)

The complexes [Cu(samen)Cu(L)] and [Cu(samen)Ni(L)₂] (Lbpy, phen) have been synthesized by the reaction of sodium N,N′-ethylenedisalicylamidatocuprate(II) pentahydrate (Na₂- [Cu(samen)]·5H₂O), a divalent metal ion, and 2,2′- dipyridyl or 1,10-phenanthroline. Cryomagnetic data for the CuCu complexes did not fit the Bleaney- Bowers equation; but the data did fit a modified Bleaney-Bowers equation

with a large negative J and a significant negative θ, suggesting that a considerable magnetic interaction operates between essentially planar [Cu(samen)Cu(L)] molecules. The magnetisms of the CuNi complexes were well interpreted in terms of the susceptibility equation based on the Heisenberg model. An antiferromagnetic spin-exchange interaction (J= −13∼−14 cm⁻¹) was suggested between the metal ions.     

Coordination geometry isomerism induced by N-H?Cl, C-H?Cl, C-H?N, C-H?π and π?π supramolecular interactions in mercury(II) complexes with tripyridylimidazole chelating ligands

Reaction of HgCl₂ with trans-(±)2-(2,5-di(pyridin-2-yl)-4,5-dihydro-1H-imidazol-4-yl)pyridine (L1) and cis-(±)-(phenyl(2,4,5-tri(pyridin-2-yl)-4,5-dihydroimidazol-1- yl)methanone (L2) gives mononuclear complexes, 1 and 2. In these complexes L1 and L2 behave as tridentate and bidentate chelating ligands, giving distorted trigonal bipyramidal and tetrahedral coordination geometries, respectively. X-ray diffraction studies revealed a series of N-H?Cl, C-H?Cl, C-H?N and C-H?π interactions in 1 giving a 3D network, and N-H?Cl, C-H?Cl, C-H?π and π?π interactions in 2 giving a 2D network in the crystal lattice. Since both ligands should have a similar binding capacity to the mercury ions, the variations observed for coordination number and geometry should be a consequence of supramolecular stabilizing effects.     

Rational derivation of CETP self-binding helical peptides by π-π stacking and halogen bonding: Therapeutic implication for atherosclerosis

The human cholesteryl ester transfer protein (CETP) transfers cholesteryl ester from high-density lipoprotein (HDL) to other lipoproteins and has been established as an attractive target for reducing the risk of atherosclerosis. Here, an amphipathic α-helix peptide, namely SBH-peptide (⁴⁶⁵EHLLVDFLQSLS⁴⁷⁶), was derived from the C-terminal tail of CETP. The peptide exhibits self-binding capability towards the CETP. Crystal structure analysis, molecular dynamics (MD) simulations and ab initio electron correlation characterizations of CETP–SBH-peptide complex system revealed that the Phe471 residue plays a key role in SBH-peptide binding, which can form a π-π stacking with the Phe197 residue of CETP. In addition, substitution of the hydrogen atom H4 of Phe471 with halogen atoms, in particular the bromine atom Br4, can constitute a geometrically satisfactory halogen bonding with the oxygen atom O of CETP Ile193 residue. Fluorescence polarization assays substantiated that (i) mutation of the aromatic Phe471 to small Ala residue would impair the SBH-peptide affinity with K_d change from 10.5 to 26.4 μM, indicating that the π-π stacking should exist in Phe471⋯Phe197 adduct, and (ii) substitution with Br4 can considerably improve SBH-peptide affinity by ∼3-fold, but the SBH-peptide binding does not change essentially upon substitution with Br3 (a negative control that is theoretically unable to form the halogen bonding), indicating that the rationally designed halogen bonding should form between the Phe471(Br4) residue of SBH-peptide and the Ile193 residue of CETP protein.     

Studies on metal-drug complexes. Crystal structure and characterization of μ-sulfato bromazepam copper(II) complex

The compound Cu(Bromazepam) SO₄ having been synthesized, its crystal structure shows distorted octahedral environment for the Copper(II) ion. Because of the long Cu-O(4) length (2.90 Å), we can consider that there is a semicoordinative interaction with the sulfate group acting as tridentate bridging ligand. The structure is a polymeric chain where dimeric units are linked by the oxygen (C-O(5)) atom of the Bromazepam carbonyl group. The drug consequently acts as a tridentate ligand in this compound. The magnetic results show a very weak antiferromagnetic interaction.     

Intramolecular hydrogen bonding, π-π stacking interactions,and substituent effects of 8-hydroxyquinoline derivative supermolecular structures: a theoretical study

Journal of Molecular Modeling - Syn and anti dihydropyrene (DHP) are excellent thermochromes, and therefore extensively studied for their thermochromic and photochromic properties, respectively....     

Dicyanamido-metal(II) complexes. Part 4: Synthesis, structure and magnetic characterization of polynuclear Cu(II) and Ni(II) complexes bridged by μ-1,5-dicyanamide

The one pot aqueous reaction of M(ClO₄)₂ (M = Cu²⁺ or Ni²⁺) with N-methylbis[2-(2-pyridylethyl)]amine (MeDEPA) and N,N′-dimethyl-N,N′-bis(2-pyridylmethyl)ethylenediamine (bpmen) and 1,4,7,10-tetraazacyclododecane (cyclen) in presence of sodium dicyanamide (Nadca) yielded dicyanamido-bridged polynuclear complex {[Cu(MeDEPA)(μ-1,5-dca)]ClO₄}_n (1), and two dinuclear complexes [Cu₂(bpmen)₂(μ-1,5-dca)]₂(ClO₄)₅dca (2) and [Ni(cyclen)(μ-1,5-dca)]₂(ClO₄)₂ (3). These complexes were characterized by IR and UV-Vis spectroscopy. Room temperature single-crystal X-ray studies have confirmed that the Cu(II) centers in 1 and 2 adopt geometries that are more close to trigonal bipyramidal (TBP) in 1 and close to square pyramidal (SP) in 2, whereas in 3, the Ni(II) centers are located in octahedral environment with doubly bridged μ-1,5-dca bonding mode. The intermolecular M···M distances in these complexes are in the range of 7.3-8.6 Å. Variable temperature magnetic susceptibility studies have confirmed that the dca-bridges mediate very weak antiferromagnetic interaction between the M(II) centers with J values of −0.35, −0.18 and −0.43 cm⁻¹ for 1, 2 and 3, respectively. The results are compared and discussed in the light of other related bridged μ-1,5-dca Cu(II) and Ni(II) complexes.     

Two new N-heterocyclic carbene silver(I) complexes with the π–π stacking interactions

The precursors bis[N-(alkyl)benzimidazoliumylmethyl]durene halide (1a: alkyl = C₂H₅, halide = Br^?; 1b: alkyl = n-C₄H₉, halide = Cl^?; durene = 1,2,4,5-tetramethylbenzene) and their two new NHC silver(I) complexes [Durene(CH₂BimyEtAgBr)₂] (2a) and [Durene(CH₂BimyⁿBuAgCl)₂] (2b) (Bimy = benzimidazol-2-ylidene) have been prepared and characterized. In the crystal structures of 2a and 2b the aromatic π–π stacking interactions are observed.     

Effect of anionic co-ligands on structure and magnetic coupling of bis(μ-phenoxo)-bridged dinuclear copper(II) complexes

Two phenoxo bridged dinuclear Cu(II) complexes, [Cu₂L₂(NO₂)₂] (1) and [Cu₂L₂(NO₃)₂] (2) have been synthesized using the tridentate reduced Schiff-base ligand 2-[(2-dimethylamino-ethylamino)-methyl]-phenol (HL). The complexes have been characterized by X-ray structural analyses and variable-temperature magnetic susceptibility measurements. The structures of the two compounds are very similar having the same tridentate chelating ligand (L) and mono-dentate anionic ligand nitrite for 1 and nitrate for 2. In both complexes Cu(II) is penta-coordinated but the square pyramidal geometry of the copper ions is severely distorted (Addison parameter (τ) = 0.33) in 1 while the distortion is quite small (average τ = 0.11) in 2. These differences have marked effect on the magnetic properties of two compounds. Although both are antiferromagnetically coupled, the coupling constants (J = −140.8 and −614.7 cm⁻¹ for 1 and 2, respectively) show that the coupling is much stronger in 2.     

Extended structures based on hydrogen bonding and π-π interactions: synthesis and characterization of two zinc complexes: [Zn(dap)Cl2] and [Zn(dap)2Cl2]

Two new Zn(II) complexes, [Zn(dap)Cl₂] (1) and [Zn(dap)₂Cl₂] (2) (dap stands for 2,3-diaminopyridine), were prepared and spectroscopically and crystallographically characterized. In both compounds, the zinc(II) atom has a pseudo-tetrahedral ZnN₂Cl₂ coordination environment. Compound 1 adopts a three-dimensional structure built up from [Zn(dap)Cl₂]_n zig-zag chains, which are linked by N-H?Cl hydrogen bonds. In compound 2 the dap is monodentate coordinating via the pyridine nitrogen; the mononuclear tetrahedral [Zn(dap)₂Cl₂] units are linked into two-dimensional sheets through extensive N-H?Cl hydrogen bonding. Inter-sheet π-π interactions connect them into a three-dimensional network.