High Recovery Purification and Some Properties of a β -Glucosidase from Aspergillus niger

A β-glucosidase was intensively purified with high recovery from a commercial preparation of Aspergillus niger by consecutive column chromatography. The enzyme was an acidic protein with a pI of 3.8, and split cellotriose to produce specifically β-D-glucose. Substrate specificity studies demonstrated that the purified enzyme required absolutely the C-4 configuration of the terminal, nonreducing β-D-glucose residues in the substrate molecules.     

Histoplasma capsulatum Recovery from the Urine and a Short Review of Genitourinary Histoplasmosis

Although virtually any organ can be involved in disseminated histoplasmosis, the recovery of Histoplasma capsulatum from the urine is a rare finding. Here we describe that a renal transplant recipient had H. capsulatum recovered from urinary sediment. The organism was also recovered from urine cultures. The potential implications of this finding are discussed, and the literature on genitourinary histoplasmosis is reviewed.     

Recovery of cognitive performance from sleep debt: do a short rest pause and a single recovery night help?

We studied the recovery of multitask performance and sleepiness from acute partial sleep deprivation through rest pauses embedded in performance sessions and an 8 h recovery sleep opportunity the following night. Sixteen healthy men, aged 19-22 yrs, participated in normal sleep (two successive nights with 8 h sleep) and sleep debt (one 2 h night sleep followed by an 8 h sleep the following night) conditions. In both conditions, the participants performed four 70 min multitask sessions, with every other one containing a 10 min rest pause with light neck-shoulder exercise. The multitask consisted of four simultaneously active subtasks, with the level of difficulty set in relation to each participant's ability. Physiological sleepiness was assessed with continuous electroencephalography/electro-oculography recordings during themultitask sessions, and subjective sleepiness was self-rated with the Karolinska Sleepiness Scale. Results showed that multitask performance and physiological and subjective sleepiness were impaired by the sleep debt ( p > .001). The rest pause improved performance and subjective sleepiness for about 15 min, regardless of the amount of prior sleep ( p > .01-.05). Following recovery sleep, all outcome measures showed marked improvement ( p < .001), but they failed to reach the levels observed in the control condition ( p < .001-.05). A correlation analysis showed the participants whose multitask performance deteriorated the most following the night of sleep loss tended to be the same persons whose performance was most impaired following the night of the recovery sleep ( p < .001). Taken together, our results suggest that a short rest pause with light exercise is not an effective countermeasure in itself for sleep debt-induced impairments when long-term effects are sought. In addition, it seems that shift arrangements that lead to at least a moderate sleep debt should be followed by more than one recovery night to ensure full recovery. Persons whose cognitive performance is most affected by sleep debt are likely to require the most sleep to recover.     

Recovery from a fish kill in a semi‐arid Australian river: Can stocking augment natural recruitment processes?

Localized catastrophic events can dramatically affect fish populations. Management interventions, such as stocking, are often undertaken to re‐establish populations that have experienced such events. Evaluations of the effectiveness of these interventions are required to inform future management actions. Multiple hypoxic blackwater events in 2010–2011 substantially reduced fish communities in the Edward‐Wakool river system in the southern Murray‐Darling Basin, New South Wales, Australia. These events led to extensive fish kills across large sections of the entire system following a period of prolonged drought. To expedite recovery efforts, 119 661 golden perch Macquaria ambigua and 59 088 Murray cod Maccullochella peelii fingerlings were stocked at five locations over 3 years. All fish stocked were chemically marked with calcein to enable retrospective evaluation of wild or hatchery origin. Targeted collections were undertaken 3 years post‐stocking to investigate the relative contribution of stocking efforts and recovery via natural recruitment in the system. Of the golden perch retained for annual ageing (n = 93) only nine were of an age that could have coincided with stocking activities. Of those, six were stocked. The dominant year‐class of golden perch were spawned in 2009; before the stocking programme began and prior to blackwater events. All Murray cod retained (n = 136) were of an age that coincided with stocking activities, although only eight were stocked. Among the Murray cod captured, the dominant year‐class was spawned in 2011, after the blackwater events occurred. The results from this study provide first evidence that natural spawning and recruitment, and possibly immigration, were the main drivers of golden perch and Murray cod recovery following catastrophic fish kills. Interpreted in the context of other recent examples, the collective results indicate limited benefit of stocking to existing connected populations already naturally recruiting in riverine systems.     

Regrowth or dispersal? Recovery of a freshwater red alga following disturbance at the patch scale

Abstract Disturbance is an important factor in species coexistence. Disturbance models require knowledge about whether disturbed patches must be colonized anew from dispersal or whether species left behind can dominate, hence altering recovery trajectories of patches. The red, filamentous alga Audouinella hermannii Roth is a common macroalgal species present at sites in the Steavenson River, a stony, upland stream in south‐eastern Australia. We conducted an experiment in which we contrasted the recovery trajectory of the alga on overturned rocks compared with those that were not overturned, and for rocks that had remnants of the alga left behind compared with others where the alga was scrubbed off completely. Rocks had either a rough or smooth texture. Experimental rocks were set out in riffles and algal recovery monitored in 8 × 8 cm quadrats at approximately 4–6 weekly intervals for 8 months. We found that overturning caused a lasting impact on A. hermannii cover, whereas rocks that were abraded by scrubbing recovered very quickly, suggesting that this alga can re‐grow quickly from fragments (a result confirmed by a second experiment). Both surface texture and resident algae affected recovery on abraded substrata. Quadrats surrounded by resident algae on rough‐textured rocks had lower algal cover compared with all other treatments. We hypothesize this effect is caused by higher densities and grazing intensities of herbivorous macroinvertebrates on those sorts of substrata, analogous to findings for marine habitats. Abrasion does not kill A. hermannii, whereas overturning likely does, necessitating new colonization. Floods often create a mix of abrasion and overturning, producing a mosaic of patches, the complexity of which is not represented well by measures of average disturbance intensity over a whole site. The use of the latter may explain some recent contradictory results among stream disturbance studies. A patch‐level perspective is needed when disturbance creates mosaics over the landscape.     

Recovery of Nonpathogenic Mutant Bacteria from Tumors Caused by Several Agrobacterium tumefaciens Strains: a Frequent Event?

We have evaluated the interaction that bacterial genotypes and plant hosts have with the loss of pathogenicity in tumors, using seven Agrobacterium tumefaciens strains inoculated on 12 herbaceous and woody hosts. We performed a screening of the agrobacteria present inside the tumors, looking for nonpathogenic strains, and found a high variability of those strains in this niche. To verify the origin of the putative nonpathogenic mutant bacteria, we applied an efficient, reproducible, and specific randomly amplified polymorphic DNA analysis method. In contrast with previous studies, we recovered a very small percentage (0.01%) of nonpathogenic strains that can be considered true mutants. Of 5,419 agrobacterial isolates examined, 662 were nonpathogenic in tomato, although only 7 (from pepper and tomato tumors induced by two A. tumefaciens strains) could be considered to derive from the inoculated strain. Six mutants were affected in the transferred DNA (T-DNA) region; one of them contained IS426 inserted into the iaaM gene, whereas the whole T-DNA region was apparently deleted in three other mutants, and the virulence of the remaining two mutants was fully restored with the T-DNA genes as well. The plasmid profile was altered in six of the mutants, with changes in the size of the Ti plasmid or other plasmids and/or the acquisition of new plasmids. Our results also suggest that the frequent occurrence of nonpathogenic clones in the tumors is probably due to the preferential growth of nonpathogenic agrobacteria, of either endophytic or environmental origin, but different from the bacterial strain inducing the tumor.Agrobacterium tumefaciens is the causal agent of crown gall, a neoplastic disease induced in a large number of dicotyledonous and some monocotyledonous plants, as well as in gymnosperms, in this case artificially (9, 32, 34, 35). Many studies have focused on the molecular understanding of the process that involves the tumorous growth of plant tissue by means of the transfer of specific genes from a plasmid harbored by the bacterium, called tumor-inducing plasmid (pTi) (7, 18, 30, 43). This transfer system has significant importance for pathogenicity and epidemiology studies, as well as for biotechnology, because this unique mechanism of pathogenicity has allowed the development of a diverse and efficient methodology for the transformation of eukaryotic cells. Other studies have concentrated on the ecology and epidemiology of Agrobacterium spp. to obtain a better knowledge of the spread and stability of the bacterium as a pathogen in tumors, hosts, and soil habitats (5, 11, 36).The pathogenicity of A. tumefaciens seems to be somewhat unstable both in association with plants and under free-living conditions. Several studies demonstrated that A. tumefaciens populations from tumors induced under natural conditions in several plants consisted mostly of nonpathogenic strains (2, 33, 38), and loss of pathogenicity has been proposed as a likely cause to explain the predominance of nonpathogens over pathogenic strains. Likewise, loss of pathogenicity has also been demonstrated in tumors developed after inoculation of apple plants with A. tumefaciens biovar 2 (3, 4), although the appearance of mutant bacteria was only observed after inoculation of plants grown in vitro, not with those grown in the greenhouse. This, together with the well-known difficulty of isolating pathogenic strains from apple tumors, fostered the hypothesis of a plant-mediated effect on the genetic instability of A. tumefaciens populations (3, 4, 10, 13). The appearance of nonpathogenic mutant bacteria was also observed when Agrobacterium strains were cultured in media supplemented with substances that are naturally present in plant wounds and that favor the activation of pathogenicity genes (13). The molecular bases of the spontaneous loss of pathogenicity in A. tumefaciens are not well understood, although previous work reported changes in the Ti plasmid, in either the regions involved in virulence, the transferred DNA (T-DNA) region, or the vir regions, due to point mutations or to the insertion of mobile elements (10, 13, 14, 21). However, it was not entirely clear that the nonpathogenic isolates were necessarily mutants derived from the inoculated strain rather than naturally occurring nonpathogenic A. tumefaciens strains.A precise knowledge of the factors that induce the putative loss of pathogenicity in A. tumefaciens, and the role that the plant might play in selecting against virulent bacteria, is pivotal for the development of effective control measures for this important plant pathogen. In the present work, we wanted to expand the preceding studies of the appearance of nonpathogenic variants and the influence of the host and of the bacterial genetic background. To confirm the identity of the nonpathogenic isolates, and to ensure that they were true variants of the inoculated strain, we combined biochemical tests with a highly discriminative randomly amplified polymorphic DNA (RAPD) procedure (24). The analysis of more than 5,400 clones allowed us to show, in contrast with previous studies, that the generation of nonpathogenic variants occurred with a very low frequency, and it appeared to be independent of the plants evaluated; we also show that the mutant bacteria were affected in large areas of the Ti plasmid and in the number of plasmids harbored.     

Recovery of the motor function of the arm with the aid of a hand exoskeleton controlled by a brain–computer interface in a patient with an extensive brain lesion

The dynamics of motor function recovery in a patient with an extensive brain lesion has been investigated during a course of neurorehabilitation assisted by a hand exoskeleton controlled by a brain–computer interface. Biomechanical analysis of the movements of the paretic arm recorded during the rehabilitation course was used for an unbiased assessment of motor function. Fifteen procedures involving hand exoskeleton control (one procedure per week) yielded the following results: (a) the velocity profile for targeted movements of the paretic hand became nearly bell-shaped; (b) the patient began to extend and abduct the hand, which was flexed and adducted at the beginning of the course; and (c) the patient started supinating the forearm, which was pronated at the beginning of the rehabilitation course. The first result is interpreted as improvement of the general level of control over the paretic hand, and the two other results are interpreted as a decrease in spasticity of the paretic hand.     

Recovery of plants from “Near-Lethal” stress

This study reports on the dieback and recovery of red-osier dogwood, Cornus sericea L. plants from near-lethal (NL, sublethal) stress after varying lengths of post-stress environment (PSE). Intact dormant stems were subjected to 47° C for one hour during either October, November or December, and then placed into either constant 0° C or 23° C (dark condition) or kept under natural conditions at Corvallis, OR. Plants exposed to NL-heat stress in October died prior to 9 weeks of 0° C PSE, while none of the plants from other PSE treatments showed signs of injury. For plants exposed to NL-heat stress during November and December, stemdieback occurred at 0° C after 12 and 15 weeks, respectively. None of the plants from the other PSE treatments were injured. Post-stress temperatures of 0° or 5° C following NL-heat in October were lethal while temperatures above 10° C allowed recovery. Post-stress exposure to 0° C injured excised stems within 48 h, whereas irreversible damage to whole plants occurred by two weeks. Dormant plants exposed in October to other stresses, e.g., freezing temperature and hydrogen cyanamide, at NL dosages showed that these stresses also caused plant dieback at 0° C and little or no dieback at 23° C PSE.Abbreviations NL Near-Lethal - PSE Post-Stress Environment     

Do Psychological Variables Affect Early Surgical Recovery?

Background

Numerous studies have examined the effect of psychological variables on surgical recovery, but no definite conclusion has been reached yet. We sought to examine whether psychological factors influence early surgical recovery.

Methods

We performed a systematic search in PubMed, Scopus and PsycINFO databases to identify studies examining the association of preoperative psychological variables or interventions with objectively measured, early surgical outcomes.

Results

We identified 16 eligible studies, 15 of which reported a significant association between at least one psychological variable or intervention and an early postoperative outcome. However, most studies also reported psychological factors not influencing surgical recovery and there was significant heterogeneity across the studies. Overall, trait and state anxiety, state anger, active coping, subclinical depression, and intramarital hostility appeared to complicate recovery, while dispositional optimism, religiousness, anger control, low pain expectations, and external locus of control seemed to promote healing. Psychological interventions (guided relaxation, couple support visit, and psychiatric interview) also appeared to favor recovery. Psychological factors unrelated to surgical outcomes included loneliness, perceived social support, anger expression, and trait anger.

Conclusion

Although the heterogeneity of the available evidence precludes any safe conclusions, psychological variables appear to be associated with early surgical recovery; this association could bear important implications for clinical practice. Large clinical trials and further analyses are needed to precisely evaluate the contribution of psychology in surgical recovery.     

Recovery of indigenous butterfly community following control of invasive alien plants in a tropical island’s wet forests

Invasive alien species pose one of the highest threats to biodiversity, especially in isolated oceanic islands where high rates of both endemism and extinction risk also usually prevail. Few studies have investigated the impact of invasive alien plants on butterflies in insular ecosystems, despite butterflies representing a key indicator group for terrestrial arthropod diversity. Using the Pollard Technique, we quantified butterfly species richness and abundance in eight wet lowland forest areas invaded by alien plants, principally the strawberry guava (Psidium cattleianum Sabine) on the tropical volcanic island of Mauritius, and compared the results with paired adjacent forest plots that had been weeded of alien plants between 2 and 12 years previously. Butterfly assemblages in weed-infested and weeded forests were distinctly different with higher species richness and much higher butterfly abundance in the latter. At least some of these differences seemed attributable to weed removal effects on forest structure, but understanding the precise mechanisms involved will require further study. The results suggest that alien plant invasion may have contributed to the extinction of certain endemic taxa and can increase the likelihood of butterfly species extinction by reducing population sizes through reduced habitat quality. Such a shift in a forest’s butterfly assemblage is likely to have negative effects on both their indigenous predators and the plants they pollinate. It is argued that in order to maintain butterfly and other arthropod diversity and function in these forests, alien plant control must be maintained and extended beyond the current 1% of surviving forest remnants.     

Recovery of zooplankton diversity in a restored Mediterranean temporary marsh in Doñana National Park (SW Spain)

Over 30 years after drainage for agriculture, a 2700 ha temporary marshland was recently restored in Doñana National Park. We describe the recovery of zooplankton communities (copepods, cladocerans and rotifers) in 47 new temporary ponds excavated as part of the restoration project during the first two hydroperiods (April 2006 and 2007), and compare them to those of eight reference sites in the surrounding marshland. Major changes in the species composition and abundance occurred in new ponds between years. While rotifers and cyclopoid copepods dominated in terms of number of individuals in 2006, calanoid copepods and cladocerans were the most abundant groups in 2007. Rotifer species richness was significantly lower in 2007, but there was an increase in Simpson and β-diversity in 2007 owing largely to a dramatic decline in the abundance of Hexarthra cf. fennica (rare in reference sites) from 93% of all rotifer individuals in new ponds in 2006 to only 32% in 2007. In contrast, species richness of copepods and cladocerans was significantly higher in new ponds in 2007, but there were no changes in Simpson diversity. β-Diversity of cladocerans was also significantly higher in 2007. In 2006, the species richness of cladocera and copepods was significantly lower in new ponds than in reference sites, but by 2007 there were no differences in richness or Simpson diversity. Overall, 7 copepod, 13 cladoceran and 26 rotifer taxa were recorded in new ponds, including 80% of taxa recorded in reference sites. These results indicate that zooplankton communities can be rapidly restored in Mediterranean temporary wetlands, at least when large source populations in the surrounding area reduce dispersal limitation. They also illustrate the importance of comparing different metrics of richness and diversity in studies of zooplankton restoration.     

Recovery of transgenic plants from “escape” shoots

The problem of escapes is well known to those investigating the regeneration of transgenic shoots from transformed callus. Shoots can pass various tests and assays for transformation, and are then scored as transgenic, but the progeny do not express the transferred trait and do not contain the T-DNA. Explanations for these enigmatic escapes include instability of the T-DNA, genomic rearrangements during meiosis, or merely non-rigorous selection or identification assays giving rise to spuriously positive scorings. At least some shoots, however, are likely to simply be chimeric, containing both transformed and non-transformed cell lines. In this case, the transformed cells are responsible for the positive selection and scoring on tests, but either do not contribute to the germ line (resulting in no transgenic progeny) or contribute to only a portion of the germ line (resulting in many fewer positive segregants than expected). We describe two methods which we used to recover fully transgenic plants from apparent escapes. One method involved analyzing more progeny than would normally be necessary (to identify minority transgenic contribution to the cell line). The other method, (to recover transgenic plants from primary selectants with no transgenic contribution to the germ line) involved regenerating new shoots from leaf tissue used in a selection assay to score the initial shoot as a positive transgenic.     

Recovery of native grass biodiversity by sowing on former croplands: Is weed suppression a feasible goal for grassland restoration?

Grassland restoration on former croplands offers good opportunity to mitigate the loss of grassland biodiversity. Weed suppression can be another benefit, which becomes increasingly important because of the high recent rate of abandonment of arable lands in Central and Eastern Europe. Our aim was to evaluate the usefulness of sowing two low-diversity seed mixtures followed by annual mowing, a frequently used restoration technique, in weed suppression. We found that rapidly forming cover of sown grasses effectively suppressed short-lived weeds and their germination except in the first year. The detected dense seed bank of short-lived weeds points out the possibility and threat of later weed infestation. In the short run perennial weeds cannot be suppressed easily by sowing and annual mowing. We found that the effectiveness of seed sowing followed by mowing in weed suppression can be different on sites with different history or seed mixture. Rapidly establishing perennial weeds, such as Agropyron species were only detected in former alfalfa fields; Cirsium arvense was found in former cereal and sunflower fields but not in former alfalfa fields. We found that the rate of weed suppression and success was influenced by the seed mixtures used. In several alkali restorations the high proportion of perennial weeds was detected in year 3. In loess restorations, much lower scores were typical. This was likely caused by the different seed mixture used. The loess seed mixture contained seeds of a clonally spreading tall-grass, Bromus inermis, which could compete more effectively with clonally spreading weeds, than could short grass species with or without tussock forming. Our findings indicate that post-restoration management require carefully designed actions that are fine-tuned addressing specific threats at the site level.     

Could Seals Prevent Cod Recovery in the Baltic Sea?

Fish populations are increasingly affected by multiple human and natural impacts including exploitation, eutrophication, habitat alteration and climate change. As a result many collapsed populations may have to recover in ecosystems whose structure and functioning differ from those in which they were formerly productive and supported sustainable fisheries. Here we investigate how a cod (Gadus morhua) population in the Baltic Sea whose biomass was reduced due to a combination of high exploitation and deteriorating environmental conditions might recover and develop in the 21st century in an ecosystem that likely will change due to both the already started recovery of a cod predator, the grey seal Halichoerus grypus, and projected climate impacts. Simulation modelling, assuming increased seal predation, fishing levels consistent with management plan targets and stable salinity, shows that the cod population could reach high levels well above the long-term average. Scenarios with similar seal and fishing levels but with 15% lower salinity suggest that the Baltic will still be able to support a cod population which can sustain a fishery, but biomass and yields will be lower. At present knowledge of cod and seal interactions, seal predation was found to have much lower impact on cod recovery, compared to the effects of exploitation and salinity. These results suggest that dual management objectives (recovery of both seal and cod populations) are realistic but success in achieving these goals will also depend on how climate change affects cod recruitment.     

Recovery after African Olive invasion: can a ‘bottom‐up’ approach to ecological restoration work?

African Olive (Olea europaea ssp. cuspidata) is a densely crowned evergreen small tree, native to eastern Africa that is highly invasive in areas where it has been introduced, including Hawaii and Australia. Invasion by African Olive threatens Cumberland Plain Woodland, a critically endangered grassy eucalypt woodland from western Sydney, Australia, through the formation of a dense mid‐canopy excluding the regeneration of native species. We established a 3‐year field experiment to determine the effectiveness of direct seeding and fire, as techniques for early stage restoration of a 2 ha historically cleared and degraded Cumberland Plain Woodland site after the removal of African Olive. Direct seeding was able to re‐establish a native perennial grass cover which was resistant to subsequent weed invasion and could be managed as an important first stage in woodland restoration with fire and selective herbicide. Fire was able to stimulate some germination of colonising native species from the soil seed bank after 15 years of African Olive invasion; however, germination and establishment of native shrubs from the applied seed mix was poor. We propose a ‘bottom‐up’ model of ecological restoration in such highly degraded sites that uses a combination of direct seeding and stimulation of the soil seed bank by fire, which could be applicable to other degraded grassy woodland sites and plant communities.     

Mouse Sperm Cryopreservation and Recovery using the I·Cryo Kit

Thousands of new genetically modified (GM) strains of mice have been created since the advent of transgenesis and knockout technologies. Many of these valuable animals exist only as live animals, with no backup plan in case of emergency. Cryopreservation of embryos can provide this backup, but is costly, can be a lengthy procedure, and generally requires a large number of animals for success. Since the discovery that mouse sperm can be successfully cryopreserved with a basic cryoprotective agent (CPA) consisting of 18% raffinose and 3% skim milk, sperm cryopreservation has become an acceptable and cost-effective procedure for archiving, distributing and recovery of these valuable strains.Here we demonstrate a newly developed I•Cryo kit for mouse sperm cryopreservation. Sperm from five commonly-used strains of inbred mice were frozen using this kit and then recovered. Higher protection ratios of sperm motility (> 60%) and rapid progressive motility (> 45%) compared to the control (basic CPA) were seen for sperm frozen with this kit in 5 inbred mouse strains. Two cell stage embryo development after IVF with the recovered sperm was improved consistently in all 5 mouse strains examined. Over a 1.5 year period, 49 GM mouse lines were archived by sperm cryopreservation with the I•Cryo kit and later recovered by IVF.