Molecular phylogeny of Sinocyclocheilus (Cypriniformes: Cyprinidae) inferred from mitochondrial DNA sequences

More than 10 species within the freshwater fish genus Sinoncyclocheilus adapt to caves and show different degrees of degeneration of eyes and pigmentation. Therefore, this genus can be useful for studying evolutionary developmental mechanisms, role of natural selection and adaptation in cave animals. To better understand these processes, it is indispensable to have background knowledge about phylogenetic relationships of surface and cave species within this genus. To investigate phylogenetic relationships among species within this genus, we determined nucleotide sequences of complete mitochondrial cytochrome b gene (1140 bp) and partial ND4 gene (1032 bp) of 31 recognized ingroup species and one outgroup species Barbodes laticeps. Phylogenetic trees were reconstructed using maximum parsimony, Bayesian, and maximum likelihood analyses. Our phylogenetic results showed that all species except for two surface species S. jii and S. macrolepis clustered as five major monophyletic clades (I, II, III, IV, and V) with strong supports. S. jii was the most basal species in all analyses, but the position of S. macrolepis was not resolved. The cave species were polyphyletic and occurred in these five major clades. Our results indicate that adaptation to cave environments has occurred multiple times during the evolutionary history of Sinocyclocheilus. The branching orders among the clades I, II, III, and IV were not resolved, and this might be due to early rapid radiation in Sinocyclocheilus. All species distributed in Yunnan except for S. rhinocerous and S. hyalinus formed a strongly supported monophyletic group (clade V), probably reflecting their common origins. This result suggested that the diversification of Sinocyclocheilus in Yunnan may correlate with the uplifting of Yunnan Plateau.     

An empirical test for convergence using African barbs (Cypriniformes: Cyprinidae)

Evidence for convergence is often based on overall similarity as interpreted by human eyes. We use geometric morphometrics and an analysis of phylogenetic signal to determine if similarity in form between two sympatric species of cyprinid fishes in a community from the Dja River of Cameroon is due convergence or shared evolutionary history. The two species, Enteromius aspilus and E. guirali, are deep-bodied and are very similar in color and appear to school together. The species co-occur with seven other species of Enteromius that have the more fusiform shape seen in other small barbs across Africa. Phylogenetic analysis of the mitochondrial cytochrome b and COI genes suggests that they are not sister taxa, and there is no phylogenetic signal when the phylogeny is overlaid on shape space. The convergence between the two is likely due to a variety of factors including predator avoidance and crypsis in open water, social mimicry to increase the benefit of the selfish herd effect, and increased protection of E. aspilus via Batesian mimicry of E. guirali, which has a protective dorsal spine.     

Threatened fishes of the world: Cyprinus micristius Regan 1906 (Cypriniformes: Cyprinidae)

Conservation status, identification, distribution, abundance, habitat and ecology, conservation actions and recommendations of a endemic cyprinid fish, Cyprinus micristius were introduced based on data and knowledge from a GEF project in Lake Dianchi, Yunnan, China.     

Phylogeny of finescale shiners of the genus Lythrurus (Cypriniformes: Cyprinidae) inferred from four mitochondrial genes

We infer the phylogenetic relationships of finescale shiners of the genus Lythrurus, a group of 11 species of freshwater minnows widely distributed in eastern North America, using DNA sequences from the ND2 (1047 bp), ATPase8 and 6 (823 bp), and ND3 (421 bp) mitochondrial protein-coding genes. The topologies resulting from maximum parsimony, Bayesian, and maximum likelihood tree building methods are broadly congruent, with two distinct clades within the genus: the L. umbratilis clade (L. umbratilis + L. lirus + (L. fasciolaris + (L. ardens, L. matutinus))) and the L. bellus clade (L. fumeus + L. snelsoni + (L. roseipinnis + (L. atrapiculus + (L. bellus, L. algenotus)))). Support is weak at the base of several clades, but strongly supported nodes differ significantly from prior investigations. In particular, our results confirm and extend earlier studies recovering two clades within Lythrurus corresponding to groups with largely "northern" and "southern" geographic distributions. Several species in this genus are listed in the United States as threatened or of special concern due to habitat degradation or limited geographic ranges. In this study, populations assigned to L. roseipinnis show significant genetic divergence suggesting that there is greater genetic diversity within this species than its current taxonomy reflects. A full accounting of the biodiversity of the genus awaits further study.     

Descriptive morphology of early developmental stages of laboratory-reared black sharkminnow Labeo chrysophekadion (Cypriniformes: Cyprinidae)

Ichthyological Research - In this study, we describe the morphological development of laboratory-reared black sharkminnow Labeo chrysophekadion larvae and juveniles. The body lengths (BL) were...     

Helminth communities of the rudd Scardinius erythrophthalmus (Cypriniformes, Cyprinidae) from Srebarna Biosphere Reserve, Bulgaria

A total of 180 individuals of Scardinius erythrophthalmus from Srebarna Lake, north-east Bulgaria, were examined for helminth parasites during spring, summer and autumn of 2005-2006 (30 specimens per season). Helminth parasites were recorded in 166 individuals (92.2%). Ten helminth species were found: trematodes--metacercariae of Posthodiplostomum cuticola, Diplostomum chromatophorum and D. spathaceum; monogeneans--Dactylogyrus difformis, D. difformoides and Diplozoon scardinii; cestodes--metacestodes of Paradilepis scolecina; nematodes--larvae of Spiroxys contortus and Rhabdochona denudata and adults of Schulmanela petruschewskii. Significant seasonal differences in the mean abundance were recorded for D. difformis, D. difformoides and D. scardinii. Significant seasonal differences in prevalence were recorded for P. cuticola, D. difformis, D. difformoides and D. scardinii. Dominant species in the component communities were P. cuticola, D. difformis and D. difformoides. The species composition of the component community essentially differs from that in the adjacent Danube River; a possible reason is the specific hydrobiological situation of the lake, characterized by a low density of benthic molluscs and crustaceans.     

Three-dimensional morphology of the Sinocyclocheilus hyalinus(Cypriniformes: Cyprinidae) horn based on synchrotron X-ray microtomography

Sinocyclocheilus is a cave-dwelling cyprinid genus endemic to southwest China. Several species possess a conspicuous horn on their head, which has been suggested as a constructive troglomorphic trait but lacks substantial evidence. We used noninvasive, high spatial resolution synchrotron X-ray microtomography to investigate the three-dimensional(3D) morphology of the horn of Sinocyclocheilus hyalinus, one of eight such troglobiotic species. 3D renderings demonstrated the osteological components,which were comprised of a rear wall comprised of the supraoccipital bone, a remaining frontal wall with numerous fenestrae, and the bottom continuous with the parietal and epiotic. A horn cavity occurred within the horn. The fenestrae in the frontal wall were continuous in the horn cavity and showed elaborate channeling, and were, connected to the cranial cavity by soft tissue. We tentatively called this configuration the otocornual connection due to its anatomic and putative functional similarity to the otolateralic connection in clupeids and loricariids, which provide an indirect pathway to enhance perception of underwater sound signals. This study provides a functional morphology context for further histological and physiological investigations of such horn structures in Sinocyclocheilus cavefish, and we suggest that the horn might enhance acoustic perception to compensate for visual loss in subterranean life, which warrants future physiological examination as lab-reared S. hyalinus become available.     

Complete mitochondrial genome of Acheilognathus signifer (Cypriniformes, Cyprinidae): comparison of light-strand replication origins from six Acheilognathus species

Acheilognathus signifer (Cypriniformes, Cyprinidae) is an endemic, endangered fresh water fish species in the Korean peninsula. In this study, the mitochondrial genome of A. signifer was completely sequenced, which is 16,566 bp in length. The characteristics of the complete mitochondrial genome were described in detail.     

The complete mitogenome of Rhodeus uyekii (Cypriniformes, Cyprinidae).

The complete nucleotide sequence of the mitochondrial genome from the R. uyekii with a total size of 16,817 bp has been determined by long PCR technology. Mitogenome of R. uyekii encoding 13 putative proteins, two ribosomal RNAs and 22 tRNAs shows typical teleost mitogenome structure. Nucleotide composition, amino acid composition and codon usage are in the range of values estimated from other teleost mitogenomes. In the AT rich region of R. uyekii, several conserved blocks which are identified from vertebrates are observed in the genome. R. uyekii, the Korean endemic species, belongs to cyprinid fish from which the information of nine mitogenomes is available. To understand the phylogenetic relationships of Cypriniformes from the known mitogenome information, we analysed Cypriniformes mitogenome based on protein coding gene sequences. In spite of more resolved picture of phylogenetic interrelationships in cyprinid fish in this study, the further study with comprehensive taxon sampling for mitogenome information is strongly needed.     

Osteological Characters to Define Six Species of the Capoeta damascina Species Complex (Cypriniformes: Cyprinidae)

Journal of Ichthyology - This paper presents the results of a comparative study of eight osteological characters: the counts, dimension and regionalization of the vertebral column, the pattern of...     

Classical and molecular cytogenetics of the zebrafish, Danio rerio (Cyprinidae, Cypriniformes): an overview

The zebrafish, Danio rerio, has recently become the model system for the genetic analysis of vertebrate development. This paper reviews the advances in zebrafish cytogenetics, obtained through classical and molecular techniques, which will lead to the assignment of specific linkage groups to specific chromosome pairs in the zebrafish genome project. Several chromosome pairs of the 50-chromosome karyotype of D. rerio were differentially stained by classical staining techniques and additional information has been obtained by molecular cytogenetics. Indeed, the analysis of constitutive heterochromatin by C-banding and base-specific fluorochrome staining had suggested a differential composition of peri- and paracentromeric constitutive heterochromatin. The chromosome mapping of distinct AT- and GC-rich zebrafish satellite DNAs by means of PRINS (Primed in situ) and multicolor FISH (Fluorescence in situ Hybridization) has confirmed this hypothesis, which therefore provided the chromosome localization of 10% of the zebrafish genome. The analysis of nucleolus organizer regions (NORs) by silver staining and by FISH with 18S rDNA has also revealed the existence of variable and inactive NORs, in addition to those on the terminal regions of the long arms of the three NOR-bearing chromosome pairs. Other multicopy genes, such as minor ribosomal genes, or multicopy repeats, such as telomere specific sequences, have now been mapped on zebrafish chromosomes. The latest advancement in zebrafish molecular cytogenetics is the chromosome mapping of single locus genes. Single-copy genes from each of the 25 genetic linkage groups are now being mapped on zebrafish chromosomes by using PAC clones.     

Tempo and mode of recurrent polyploidization in the Carassius auratus species complex (Cypriniformes,Cyprinidae)

Polyploidization is an evolutionarily rare but important mechanism in both plants and animals because it increases genetic diversity. Goldfish of the Carassius auratus species complex can be tetraploids, hexaploids and octaploids. Polyploidization events have occurred repeatedly in goldfish, yet the extent of this phenomenon and its phyletic history are poorly understood. We explore the origin, tempo and frequency of polyploidization in Chinese and Japanese goldfish using both mitochondrial (mtDNA) and nuclear DNA sequences from up to 1202 individuals including the outgroup taxon, Cyprinus carpio. Analyses of de novo nuclear gene data resolve two clusters of alleles and the pattern supports the prior hypothesis of an ancient allotetraploidization for Carassius. Alleles shared by tetraploid and hexaploid individuals indicate recent autoploidizations within the C. auratus complex. Sympatric tetraploids and hexaploids share mtDNA haplotypes and these frequently occur independently within six well-supported lineages and sublineages on a small spatial scale. Gene flow estimates (F_st values) indicate that hexaploids differ only slightly from sympatric tetraploids, if at all. In contrast, allopatric populations of tetraploids and hexaploids differ from one another to a far greater extent. Gene flow between sampled localities appears to be limited. Coalescence-based time estimations for hexaploids reveal that the oldest lineage within any sampled locality is around one million years old, which is very young. Sympatric, recurrent autoploidization occurs in all sampled populations of the C. auratus complex. Goldfish experience polyploidization events more frequently than any other vertebrate.     

Features of reproductive biology in females of bitterlings (Cyprinidae: Acheilognathinae) from the Amur River basin

Data on morphological and functional characteristics of the ovipositor, conical organ, and ovaries in four species of bitterlings (Russian bitterling Acanthorodeus asmussii, Khanka spiny bitterling A. chankaensis, bitterling Rhodeus sericeus, and Amur bitterling R. amurensis) from the Amur River basin are obtained and reviewed for the first time. In all studied fish species, several generations of sex cells develop at the same time, which leads to releasing of oocytes in batches. The specificity of Amur bitterling, bitterling, and Russian bitterling to selection of mollusks for egg deposition is determined.     

广西南宁渐新世基于咽齿的鲤亚科一新属

记述了产自广西南宁盆地渐新世早—中期的鲤科鲤亚科一新属种——伍氏南宁鲤(+Nanningocyprinus wui gen.et sp.nov).化石材料包括一些咽喉骨和咽齿.这些咽喉骨和咽齿的以下特征组合明显不同于其他鲤科鱼类:齿式-3·2·1,主行第一枚咽齿大小是第二枚的3～4倍,第二枚咽齿及第二行第一枚咽齿咀嚼面上各仅有一条沟纹,咽骨前角很发育.该属种的发现进一步证明鲤亚科是鲤科中较早的分支,中国南方很有可能是鲤亚科的起源和分化中心.