Recreational fishing impacts on threatened river sharks: A potential conservation issue

The Adelaide River in Australia's Northern Territory is a popular recreational fishing area, as well as habitat for threatened and protected river sharks (Glyphis species). Both the Critically Endangered Speartooth Shark (Glyphis glyphis) and Endangered Northern River Shark (Glyphis garricki) are identified here in illegal catches from recreational angling. The identification of a decayed shark specimen using a DNA barcoding‐like approach is the first such application to the identification of protected sharks in a recreational fishery. While the extent of catches by recreational anglers is unknown, the threatened status of these sharks, their suspected low population sizes, restricted distributions and importance of the Adelaide River as a nursery area call for the consideration of this as a potential conservation issue. As such, appropriate measures should be taken to reduce interactions with recreational anglers. The primary target species in the river is the iconic sportfish, Barramundi, which is predominantly caught by unbaited lure. Sharks are rarely caught on lure, allowing an opportunity for mitigation to focus on a fishing activity (baited hooks) which would limit any regulatory impact on popular lure fishing. Potential mitigation measures range from increased angler education and compliance checks, to the implementation of a spatial closure to baited hook fishing (a lure‐only zone). Such measures may assist in meeting a stated objective of the Australian Government's river shark Recovery Plan to ‘reduce and, where possible, eliminate adverse impacts of recreational fishing'.     

Uptake and resource allocation of inorganic carbon by the temperate seagrasses Posidonia and Amphibolis

Productivity measurements from carbon uptake have been suggested as good indicators of the physiological health of seagrasses. As seagrasses acquire carbon from the surrounding water, the rate of uptake often provide a good measure of the efficiency at which seagrasses meet their resource demands for growth. This rate is often used to assess the photosynthetic efficiency of the plants, a proxy for the physiological status of seagrass. This has special relevance to the Adelaide region as over 5000 ha of seagrasses have been lost from Adelaide coastal waters over the last 70 years, with much of this loss attributed to nutrient inputs from wastewater, industrial and stormwater discharges. This study used an in-situ inorganic carbon isotope-labelling and spike approach to obtain ecologically relevant estimates of seasonal variability in carbon uptake and its allocation in two species of temperate seagrass common to this coast (Amphibolis antarctica and Posidonia angustifolia). Uptake of carbon by the seagrass complex (leaves, roots, phytoplankton and epiphytes) was affected by both season and species. Carbon uptake rates of phytoplankton were generally higher than other components of the system. Uptake rates ranged from 0.01 mg C g^− 1 DW h^− 1 (summer) to 0.61 mg C g^− 1 DW h^− 1 (spring) in Posidonia and 0.02 mg C g^− 1 DW h^− 1 (summer) to 0.93 mg C g^− 1 DW h^− 1 (winter) in Amphibolis. Carbon uptake by the Amphibolis complex was higher than in the Posidonia complex. The Amphibolis complex had higher uptake rates in summer whereas the Posidonia complex was higher in spring. Fine sediments probably from a nearby dredging operation, are likely to have resulted in lower carbon uptake and a reduction in the above-ground and below-ground biomass in summer.     

R.B. Merrifield: European footnotes to his life and work.

Some reflections on the life and work of RB Merrifield in the European context are given.     

Primordia Vita. Deconvolution from Modern Sequences.

Evolution of the triplet code is reconstructed on the basis of consensus temporal order of appearance of amino acids. Several important predictions are confirmed by computational sequence analyses. The earliest amino acids, alanine and glycine, have been encoded by GCC and GGC codons, as today. They were succeeded, respectively, by A- and G-series of amino acids, encoded by pyrimidine-central and purine-central codons. The length of the earliest proteins is estimated to be 6–7 residues. The earliest mRNAs were short G+C-rich molecules. These short sequences could have formed hairpins. This is confirmed by analysis of modern prokaryotic mRNA sequences. Predominant size of detected ancient hairpins also corresponds to 6–7 amino acids, as above. Vestiges of last common ancestor can be found in extant proteins in form of entirely conserved short sequences of size six to nine residues present in all or almost all sequenced prokaryotic proteomes (omnipresent motifs). The functions of the topmost conserved octamers are not involved in the basic elementary syntheses. This suggests an initial abiotic supply of amino acids, bases and sugars. Presented at: National Workshop on Astrobiology: Search for Life in the Solar System, Capri, Italy, 26 to 28 October, 2005.     

Zum 70. Geburtstag Von Professor Dr. Habil. Theo Wetzel

Information on the structure of the population of Phomopsis species in Ukraine, that describes the structure of Phomopsis spp. cultivated on medium: the morfological characteristics, properties of pathogenicity and phytotoxicity. It is described the method of evaluation and selection of unsusceptible forms of sunflower to phomopsis. It includes the optimal infection level, the forms of an inoculum that is effective and optimal way for artificial infection.     

花叶千年木愈伤组织直接再生花序

以花叶千年木(Dracaena fragrans cv. Massangeana Hort.)的花被筒、花序分枝轴和花序轴为外植体成功地诱导了花序的直接再生. 3种外植体首先在MS附加1.0 mg/L 6-BA和0.5-0.8mg/L 2,4-D的培养基上诱导形成愈伤组织,然后转移到MS附加0.5 mg/L 6-BA和0.005～0.5 mg/L 2,4-D的培养基上分别诱导了花序的直接再生.观察了愈伤组织形成和花序分化的形态学过程.     

三七植物各部位的研究和开发利用

本文报道了对三七根、绒根、根茎、茎叶、花蕾,果实,果梗等的化学成分研究;皂甙提取分离方法;皂甙及黄酮类成分的生理活性及新药开发利用等的研究概况。     

H.A. Hawkes—A pioneer of field ecology

This article outlines the life and career of H.A. (Bert) Hawkes, who has been referred to as one of the founders of field ecology, due to the work he conducted in the late 1940s and 1950s, investigating the fly nuisance emanating from biological filters. Following an overview of his life, there is a focus on his core research, carried out over a period of some 50 years, on two aspects of river pollution control—the prevention of pollution by sewage biological filtration and the monitoring of river pollution by biological surveillance.     

Relaxation kinetics of E. coli ribosomes.

Relaxation kinetics measurements on two types of ribosome preparations were parformed by the pressure-jump and temperature-Jump techniques, using light scattered at 90° as detector. For freshly prepared tibosomes isolated as 70S tight coupled from 26 000 RPM sucrose gradint sedimentation in 10 mM Mg²⁺, surprisingly large reaction amplitudes were found in 10 mM Mg²⁺ wilh both techniques, leading to an overall formation constant for 70S couples approximately three orders of magnitude smaller than that reported fot tight couples. For pelleted, two-tunes salt-washed ribosomes, amplitude titration versus Mg²⁺ in the pressure-jump apparatus showed an amplitude maximum near 10 mM Mg²⁺ with a relaxation time near 20 ms, and a second amplitude maximum near 2.5 mM Mg²⁺ with a relaxation time near 25 s. Both types of preparation on reanalysis on sucrose gradients at 5 mM Mg²⁺ showed approximately 15% of subunits, with a distinct zone in the 50S region. 70S light couples recovered from a sucrose density gradient separation at 5 mM Mg²⁺ on pelleted two-times salt-washed ribosomes behaved in the same way as the original sample in pressure-jump experiments at 10 mM Mg²⁺. These findings have been interpreted as follows (I) the processes observed at 10 mM Mg²⁺ are due entirety to the relatively small loose couple content of the samples, even in the case of material isolated as 70S tight couples, (2) the processes observed at 2.5 mM Mg²⁺ are due almost entirely to the preponderant tight couple population of the material, and (3) samples isolated as 70S tight couples from sucrose gradients at 5 mM Mg²⁺ spontaneously revert within hours into micro-heterogeneous material containing about 15% loose couples, for both types of ribosomes.     

一个不合格发表的新种名——福建双翅龙脑香

杨永康等建立并发表的化石新种福建双翅龙脑香(Diptercoarpus fujianensis Y.K.Yang,H.M.Li et J.K.wu sp.nov.fossil plant)未附任何照片或素描图,且无正规的模式标本登记号和确切的存放单位,与国际植物命名法规中有关古植物的重要条款和规则不符.因此,这个新种名属于不合格发表.     

赤斑羚和斑羚核型比较研究

本文对赤斑羚（ＮａｅｍｏｒｈｅｄｕｓＣｒａｎｂｒｏｏｋｉ）和斑羚（Ｎ．ｇｏｒａｌｇｒｉｓｅｕｓ）的染色体Ｇ带、Ｃ带和Ａｇ－ＮＯＲｓ的数目、分布等作了较详细的比较研究。赤斑羚２ｎ＝５６全部为近端着丝粒染色体,Ｎ．Ｆ＝５４;斑羚２ｎ＝５４,除Ｎｏ．３是亚中着丝粒染色体外,具有丰富的异染色质;二者Ｇ带带纹相似程度高,其Ｎｏ．３长臂Ｇ带带纹相似。斑羚的Ｎｏ．３短臂与赤斑羚Ｎｏ．２７近端着丝粒染色体的大小、     

树干径流模型

以红松代表针叶树,栎树代表阔叶树,通过模拟实验研究树干径流过程,根据实验结果从机理上构造了模型。树干径流模型为一个方程组用“辗转迭代法”求出了数值解。该方程组基本上揭示了树干径流的规律,从实验与模拟结果对比分析中得到了佐证。     

Sarcocystis dubeyella n. sp. and Sarcocystis phacochoeri n. sp. (Protozoa: Sarcocystidae) from the Warthog (Phacochoerus aethiopicus) in South Africa

ABSTRACT Sarcocystis dubeyella n. sp. and S. phacochoeri n. sp. from muscle fibers of the skeletal musculature of two warthogs in South Africa are described by light and and electron microscopy. Sarcocystis dubeyella sarcocysts are macroscopic (up to 12 mm long and 1 mm wide), with a parasite-induced encapsulation of the host muscle fiber in which the plasma membrane of the latter remained unaltered. The sarcocyst wall is characterized by evenly arranged, irregularly semicircular or rectangular villar protrusions (5.0 T. 2.8-11.0 μm) with indented margins and no specific content. Sarcocystis phacochoeri formed filiform microcysts (up to 4 mm long and 0.13 mm wide). Its cyst wall is provided with tightly packed, molarlike villar protrusions (1.6-3.3 T. 1.7-3.3 μm), with smooth margins, hollow on one side, and with longitudinal condensations of the fine granular matrix at various locations in the interior.     

Rotational diffusion of Escherichia coli ribosomes. I. - Free 70 S, 50 S and 30 S particles.

The rotational brownian diffusion of Escherichia coli ribosomes has been studied by following the transient dichroism generated by optical excitation of a covalent probe into its triplet state. The induced absorption anisotropy decays exponentially with characteristic correlation times: 2.5 microseconds, 1.6 microseconds and 1.1 microseconds for the 70S ribosome and the 50S and 30S subparticles respectively. The corresponding Stokes radii are in the same order, 133 A, 115 A and 103 A. The hydrodynamic properties are discussed in terms of an ellipsoidal shape of the ribosome particles.     

Recent artificial selection in U.S. Jersey cattle impacts autozygosity levels of specific genomic regions

Background

Genome signatures of artificial selection in U.S. Jersey cattle were identified by examining changes in haplotype homozygosity for a resource population of animals born between 1953 and 2007. Genetic merit of this population changed dramatically during this period for a number of traits, especially milk yield. The intense selection underlying these changes was achieved through extensive use of artificial insemination (AI), which also increased consanguinity of the population to a few superior Jersey bulls. As a result, allele frequencies are shifted for many contemporary animals, and in numerous cases to a homozygous state for specific genomic regions. The goal of this study was to identify those selection signatures that occurred after extensive use of AI since the 1960, using analyses of shared haplotype segments or Runs of Homozygosity. When combined with animal birth year information, signatures of selection associated with economically important traits were identified and compared to results from an extended haplotype homozygosity analysis.

Results

Overall, our results reveal that more recent selection increased autozygosity across the entire genome, but some specific regions increased more than others. A genome-wide scan identified more than 15 regions with a substantial change in autozygosity. Haplotypes found to be associated with increased milk, fat and protein yield in U.S. Jersey cattle also consistently increased in frequency.

Conclusions

The analyses used in this study was able to detect directional selection over the last few decades when individual production records for Jersey animals were available.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-1500-x) contains supplementary material, which is available to authorized users.     

耐受性定律的一个数学注记

在许多著作中关于耐受性定律的叙述大同小异。为了视限制因子原理和Liebig 最小因子定律为耐受性定律的特殊情况(某些侧面),我们采用[1]对耐受性定律的叙述:一种环境因子对每一种生物都有一个范     

Significance of a new chromosome number in Nitella mirabilis Nordst. ex Groves em. R.D.W.

The new chromosome number n = 9 has been reported in Nitella mirabilis Nordst. ex. Groves em. R.D.W. Discussing the significance of this new chromosome number with regard to arthrodactylous and anarthrodactylous groups of the genus Nitella, the possible origin of a 9 chromosome form of N. mirabilis due to hybridization has been suggested.