Malaria control: present situation and need for historical research

A rapid review is made of the history of malaria control, calling attention to differences between the evolution of the technical concepts, the formulated strategies and their implementation. Particular emphasis is placed on the discussion of the present situation of the world malaria problem and the difficulties faced by many endemic countries in adopting a malaria control strategy, based on primary health care, while their services are vertically organized for the performance of routines, which are irrelevant for disease control. The present malaria control strategy recognizes local variability, but it is possible to identify a limited number of types of situations, likely to respond to similar approaches. The definition not only of the control approaches but also of their conditions of applicability will become more precise as experiences are accumulated and adequately documented from different types of epidemiological situations. It is postulated that historical research on the malaria control and public health approaches, with proper attention being given to their socioeconomic and political context, in the countries which succeeded in controlling endemic malaria, will make an important contribution to such a definition.     

An optimized human resource management model for cloud-edge computing in the internet of things

The use of cloud-edge technology creates significant potential for cost reduction, efficiency and resource management. These features have encouraged users and organizations to use intelligence federated cloud-edge paradigm in Internet of Things (IoT). Human Resource Management (HRM) is one of the important challenges in federated cloud-edge computing. Since hardware and software resources in the edge environment are allocated for responding human requests, selecting optimal resources based on Quality of Service (QoS) factors is a critical and important issue in the IoT environments. The HRM can be considered as an NP-problem in a way that with proper selection, allocation and monitoring resource, system efficiency increases and response time decreases. In this study, an optimization model is presented for the HRM problem using Whale Optimization Algorithm (WOA) in cloud-edge computing. Experimental results show that the proposed model was able to improve minimum response time, cost of allocation and increasing number of allocated human resources in two different scenarios compared to the other meta-heuristic algorithms.

     

Structure-approximating inverse protein folding problem in the 2D HP model.

The inverse protein folding problem is that of designing an amino acid sequence which has a particular native protein fold. This problem arises in drug design where a particular structure is necessary to ensure proper protein-protein interactions. In this paper, we show that in the 2D HP model of Dill it is possible to solve this problem for a broad class of structures. These structures can be used to closely approximate any given structure. One of the most important properties of a good protein (in drug design) is its stability--the aptitude not to fold simultaneously into other structures. We show that for a number of basic structures, our sequences have a unique fold.     

Quantifying Trends in Disease Impact to Produce a Consistent and Reproducible Definition of an Emerging Infectious Disease

The proper allocation of public health resources for research and control requires quantification of both a disease''s current burden and the trend in its impact. Infectious diseases that have been labeled as “emerging infectious diseases” (EIDs) have received heightened scientific and public attention and resources. However, the label ‘emerging’ is rarely backed by quantitative analysis and is often used subjectively. This can lead to over-allocation of resources to diseases that are incorrectly labelled “emerging,” and insufficient allocation of resources to diseases for which evidence of an increasing or high sustained impact is strong. We suggest a simple quantitative approach, segmented regression, to characterize the trends and emergence of diseases. Segmented regression identifies one or more trends in a time series and determines the most statistically parsimonious split(s) (or joinpoints) in the time series. These joinpoints in the time series indicate time points when a change in trend occurred and may identify periods in which drivers of disease impact change. We illustrate the method by analyzing temporal patterns in incidence data for twelve diseases. This approach provides a way to classify a disease as currently emerging, re-emerging, receding, or stable based on temporal trends, as well as to pinpoint the time when the change in these trends happened. We argue that quantitative approaches to defining emergence based on the trend in impact of a disease can, with appropriate context, be used to prioritize resources for research and control. Implementing this more rigorous definition of an EID will require buy-in and enforcement from scientists, policy makers, peer reviewers and journal editors, but has the potential to improve resource allocation for global health.     

Determining Allocation: From Paper to Practice in the Distribution of Fishing Rights Between Countries

This article discusses the allocation problem in international fisheries management, which is critical to effective resource management. A number of cases where allocation problems exist are reviewed and trends identified. It is concluded that power relationships between the states involved are an important determinant of allocation outcomes. While this may seem a frustrating conclusion, it nevertheless reflects the realities of international cooperation.     

基于视觉廊道的青藏铁路沿线旅游动态景观评价

青藏铁路作为一种重要的"线性"廊道,不仅起着重要的区域连接作用,促进着区域经济和社会发展,还具有旅游观光和体验的功能。基于游客视角对青藏铁路沿线10个自然景观段进行了青藏铁路沿线旅游动态景观评价研究。详细界定了铁路沿线动态景观评价的对象,构建了"游客眼"——青藏铁路沿线动态景观评价模型。动态景观评价是基于旅游列车在行进过程中以旅游者的眼睛感受到的景观质量高低——景观基底(包括地貌景观多样性、动植物点缀度、人文景观丰富度等),在列车行进过程中哪些景观能被游客捕捉到受到景观视域(包括相对坡度、景观在视域内出现几率、距离的远近等)的制约,哪些景观能被游客留下深刻印象要受到景观美感(包括色彩、奇异罕见景观、水体配置等)的影响。搭建了青藏铁路沿线旅游动态景观评价指标体系,青藏铁路沿线旅游动态景观评价指标体系包括沿线景观基底指标、景观视域评价指标和景观动态美感指标3个类指标和9个基础指标,动态景观评价指标的选择和权重确定主要采用层次分析法(Analytic Hierarchy Process,简称AHP),动态景观评价主要是基于模糊综合评判方法。通过对青藏铁路沿线10个自然景观段的各指标量化打分以及计算,结果发现:青藏铁路沿线不同景观带给游客的感受差异很大,10个旅游景观段的景观质量从高到低排序为:念青唐古拉宽谷盆地高寒草原草甸景观段、昆仑高山荒漠与荒漠草原景观段、可可西里—长江源宽谷高寒草原景观段、唐古拉极高山高寒草甸景观段、青海湖盆地草甸草原景观段、怒江源宽谷高寒草甸景观段、拉萨河谷灌丛草原景观段、柴达木盆地东北亚高山荒漠草原景观段、湟水谷地温性草原景观段、柴达木盆地盐湖戈壁荒漠景观段。其中旅游动态景观质量极高的有1个,旅游动态景观质量较高的有6个,旅游动态景观质量一般的有2个,旅游动态景观质量低的有1个。客观评估青藏铁路沿线各景观段的景观,有助于游客预知和了解青藏铁路途中旅游景观质量,对于地方相关部门指导青藏铁路旅游业的发展和景观管理、打造、开发、决策提供了参考依据。     

The protein side of the central dogma: permanence and change

There are two facets to the central dogma proposed by Francis Crick in 1957. One concerns the relation between the sequence of nucleotides and the sequence of amino acids, the second is devoted to the relation between the sequence of amino acids and the native three-dimensional structure of proteins. 'Folding is simply a function of the order of the amino acids,' i.e. no information is required for the proper folding of a protein other than the information contained in its sequence. This protein side of the central dogma was elaborated in a scientific context in which the characteristics and functions of proteins, and the mechanisms of protein folding, were seen very differently. This context, which made the folding problem a simple one, supported the bold proposition of Francis Crick. The protein side of the central dogma was not challenged by the discovery of prions if one adopts the definition of information given by Francis Crick. It might have been challenged by the discovery that regulatory enzymes exist in different conformations, and the evidence for the existence of chaperones assisting protein folding. But it was not, and folding remains what it was for Francis Crick, 'simply a function of the order of amino acids'. But the meaning of 'function' has dramatically changed. It is no longer the result of simple physicochemical laws, but that of a long evolutionary process which has optimized protein folding. Molecular mechanistic explanations have to be allied with evolutionary explanations, in a way characteristic of present biology.     

The importance of growth and mortality costs in the evolution of the optimal life history

A central assumption of life history theory is that the evolution of the component traits is determined in part by trade-offs between these traits. Whereas the existence of such trade-offs has been well demonstrated, the relative importance of these remains unclear. In this paper we use optimality theory to test the hypothesis that the trade-off between present and future fecundity induced by the costs of continued growth is a sufficient explanation for the optimal age at first reproduction, alpha, and the optimal allocation to reproduction, G, in 38 populations of perch and Arctic char. This hypothesis is rejected for both traits and we conclude that this trade-off, by itself, is an insufficient explanation for the observed values of alpha and G. Similarly, a fitness function that assumes a mortality cost to reproduction but no growth cost cannot account for the observed values of alpha. In contrast, under the assumption that fitness is maximized, the observed life histories can be accounted for by the joint action of trade-offs between growth and reproductive allocation and between mortality and reproductive allocation (Individual Juvenile Mortality model). Although the ability of the growth/mortality model to fit the data does not prove that this is the mechanism driving the evolution of the optimal age at first reproduction and allocation to reproduction, the fit does demonstrate that the hypothesis is consistent with the data and hence cannot at this time be rejected. We also examine two simpler versions of this model, one in which adult mortality is a constant proportion of juvenile mortality [Proportional Juvenile Mortality (PJM) model] and one in which the proportionality is constant within but not necessarily between species [Specific Juvenile Mortality (SSJM) model]. We find that the PJM model is unacceptable but that the SSJM model produces fits suggesting that, within the two species studied, juvenile mortality is proportional to adult mortality but the value differs between the two species.     

A note on biotopology of reproduction

In a recent paper (Bull. Math. Biophysics, 20, 245, 1958), Robert Rosen applied topological considerations to the study of an organism as a whole. Those considerations have no direct relation to the principle of biotopological mapping. They rather represent a topological model of an organism, especially a model of the repair mechanisms which organisms possess for lost or impaired parts. In this note it is shown that the model introduced by Rosen may possibly be derived from the principle of biotopological mapping plus a proper definition of the primordial. Such a derivation may also provide a clue to a proper biotopological approach to the problem of multiplication of organisms.     

Analysis of mussel growth data*

This short paper considers the problem of estimating the year of birth of a mussel picked at an unknown time. This is an important problem not only for studying a certain mussel population but also for environmental monitoring. A mathematical formulation of the problem is presented, which leads to a combined delay estimation and constrained linear regression problem. A solution is developed and applied to the estimation problem. Examples with mussels picked from a river in Sweden are shown, which demonstrate that the proposed technique works well in practice.     

Irrational time allocation in decision-making

Time is an extremely valuable resource but little is known about the efficiency of time allocation in decision-making. Empirical evidence suggests that in many ecologically relevant situations, decision difficulty and the relative reward from making a correct choice, compared to an incorrect one, are inversely linked, implying that it is optimal to use relatively less time for difficult choice problems. This applies, in particular, to value-based choices, in which the relative reward from choosing the higher valued item shrinks as the values of the other options get closer to the best option and are thus more difficult to discriminate. Here, we experimentally show that people behave sub-optimally in such contexts. They do not respond to incentives that favour the allocation of time to choice problems in which the relative reward for choosing the best option is high; instead they spend too much time on problems in which the reward difference between the options is low. We demonstrate this by showing that it is possible to improve subjects'' time allocation with a simple intervention that cuts them off when their decisions take too long. Thus, we provide a novel form of evidence that organisms systematically spend their valuable time in an inefficient way, and simultaneously offer a potential solution to the problem.     

Serrate-Notch signaling defines the scope of the initial denticle field by modulating EGFR activation

The Drosophila embryonic epidermis has been a key model for understanding the establishment of cell type diversity across a cellular field. During segmental patterning, distinct signaling territories are established that employ either the Hedgehog, Spitz, Serrate or Wingless ligands. How these pathways control segmental pattern is not completely clear. One major decision occurs as cells are allocated to differentiate either smooth cuticle or denticle type cuticle. This allocation is based on competition between Wingless signaling and Spitz, which activates the Epidermal Growth Factor Receptor (EGFR). Here we show that a main role for Serrate-Notch signaling is to adjust the Spitz signaling domain. Serrate accomplishes this task by activating Notch in a discrete domain, the main purpose of which is to broaden the spatially regulated expression of Rhomboid. This adjusts the breadth of the source for Spitz, since Rhomboid is necessary for the production of active Spitz. We also show that the Serrate antagonist, fringe, must temper Notch activity to insure that the activation of the EGFR is not too robust. Together, Serrate and Fringe modulate Notch activation to generate the proper level of EGFR activation. If Serrate-Notch signaling is absent, the denticle field narrows while the smooth cell field expands, as judged by the expression of the denticle field determinant Ovo/Shaven baby. This establishes one important role for the Serrate signaling territory, which is to define the extent of denticle field specification.     

A general-purpose framework to simulate musculoskeletal system of human body: using a motion tracking approach*

Computation of muscle force patterns that produce specified movements of muscle-actuated dynamic models is an important and challenging problem. This problem is an undetermined one, and then a proper optimization is required to calculate muscle forces. The purpose of this paper is to develop a general model for calculating all muscle activation and force patterns in an arbitrary human body movement. For this aim, the equations of a multibody system forward dynamics, which is considered for skeletal system of the human body model, is derived using Lagrange–Euler formulation. Next, muscle contraction dynamics is added to this model and forward dynamics of an arbitrary musculoskeletal system is obtained. For optimization purpose, the obtained model is used in computed muscle control algorithm, and a closed-loop system for tracking desired motions is derived. Finally, a popular sport exercise, biceps curl, is simulated by using this algorithm and the validity of the obtained results is evaluated via EMG signals.     

森林生态系统健康评估的一般性途径探讨

生态系统健康评估方法及指标体系成为21世纪生态系统健康研究的核心内容．作为陆地生态系统的重要组成部分,森林生态系统健康的评估研究引起了广泛的关注．学者们对森林生态系统健康的定义、测度、评估和管理开始做出积极的探讨和实践,提出了一些理论和应用上的评价方法、评估途径和框架,为解决陆地生态系统危机甚至全球环境问题提供了新的概念和一系列研究手段．但由于多种条件的限制,目前仍然没有通用有效的评估森林生态系统健康的一般模式．文中简要探讨了森林生态系统健康问题,提出有效评估森林健康的3个前提：1)清晰明确的概念框架;2)充分有效的数据信息;3)正确合理的研究途径和技术手段．并分别进行了探讨．在此基础上总结阐述了可用于森林生态系统健康评估研究的途径：长期研究和定位监测、时空互换、历史研究途径、经济价值评估及其途径等．     

The orientation of cell divisions determines the shape of Drosophila organs

Organ shape depends on the coordination between cell proliferation and the spatial arrangement of cells during development. Much is known about the mechanisms that regulate cell proliferation, but the processes by which the cells are orderly distributed remain unknown. This can be accomplished either by random division of cells that later migrate locally to new positions (cell allocation) or through polarized cell division (oriented cell division; OCD). Recent data suggest that the OCD is involved in some morphogenetic processes such as vertebrate gastrulation, neural tube closure, and growth of shoot apex in plants; however, little is known about the contribution of OCD during organogenesis. We have analyzed the orientation patterns of cell division throughout the development of wild-type and mutant imaginal discs of Drosophila. Our results show a causal relationship between the orientation of cell divisions in the imaginal disc and the adult morphology of the corresponding organs, indicating a key role of OCD in organ-shape definition. In addition, we find that a subset of planar cell polarity genes is required for the proper orientation of cell division during organ development.     

An algorithm for approximate tandem repeats.

A perfect single tandem repeat is defined as a nonempty string that can be divided into two identical substrings, e.g., abcabc. An approximate single tandem repeat is one in which the substrings are similar, but not identical, e.g., abcdaacd. In this paper we consider two criterions of similarity: the Hamming distance (k mismatches) and the edit distance (k differences). For a string S of length n and an integer k our algorithm reports all locally optimal approximate repeats, r = umacro ?, for which the Hamming distance of umacro and ? is at most k, in O(nk log (n/k)) time, or all those for which the edit distance of umacro and ? is at most k, in O(nk log k log (n/k)) time. This paper concentrates on a more general type of repeat called multiple tandem repeats. A multiple tandem repeat in a sequence S is a (periodic) substring r of S of the form r = u(a)u', where u is a prefix of r and u' is a prefix of u. An approximate multiple tandem repeat is a multiple repeat with errors; the repeated subsequences are similar but not identical. We precisely define approximate multiple repeats, and present an algorithm that finds all repeats that concur with our definition. The time complexity of the algorithm, when searching for repeats with up to k errors in a string S of length n, is O(nka log (n/k)) where a is the maximum number of periods in any reported repeat. We present some experimental results concerning the performance and sensitivity of our algorithm. The problem of finding repeats within a string is a computational problem with important applications in the field of molecular biology. Both exact and inexact repeats occur frequently in the genome, and certain repeats occurring in the genome are known to be related to diseases in the human.     

Exemplar-Based Image Inpainting Using a Modified Priority Definition

Exemplar-based algorithms are a popular technique for image inpainting. They mainly have two important phases: deciding the filling-in order and selecting good exemplars. Traditional exemplar-based algorithms are to search suitable patches from source regions to fill in the missing parts, but they have to face a problem: improper selection of exemplars. To improve the problem, we introduce an independent strategy through investigating the process of patches propagation in this paper. We first define a new separated priority definition to propagate geometry and then synthesize image textures, aiming to well recover image geometry and textures. In addition, an automatic algorithm is designed to estimate steps for the new separated priority definition. Comparing with some competitive approaches, the new priority definition can recover image geometry and textures well.     

On the use of cartographic projections in visualizing phylo-genetic tree space

Phylogenetic analysis is becoming an increasingly important tool for biological research. Applications include epidemiological studies, drug development, and evolutionary analysis. Phylogenetic search is a known NP-Hard problem. The size of the data sets which can be analyzed is limited by the exponential growth in the number of trees that must be considered as the problem size increases. A better understanding of the problem space could lead to better methods, which in turn could lead to the feasible analysis of more data sets. We present a definition of phylogenetic tree space and a visualization of this space that shows significant exploitable structure. This structure can be used to develop search methods capable of handling much larger data sets.     

Design of Supervisors to Avoid Deadlock in Flexible Assembly Systems

Modern production systems exhibit a high degree of resource sharing that can lead to deadlock conditions. Deadlock arises when some parts remain indefinitely blocked because each of them requests access to a resource held by some other parts. One of the tasks of the control system lies in preventing such situations from occurring by proper resource management. This article addresses the deadlock problem for an important class of production facilities, that is, flexible assembly systems, that can perform both manufacturing or assembly operations. In particular, we develop an approach to deadlock avoidance based on a supervisory control that works by inhibiting or enabling the events involving resource allocation. The article proposes two supervisors characterized by easy implementation, efficiency, and flexibility in resource management. The analysis of some case studies, performed by discrete event simulation, confirms the effectiveness of the approach.