Use of Trichoderma harzianum cultured on ground mesocarp fibre of oil-palm as seed treatment to control Pythium aphanidermatum,a causal agent of damping-off of Chinese kale seedling

Trichoderma harzianum, isolate T 01-22, was cultured on either sorghum grains, ground mesocarp fibre of oil-palm or oil-palm shell, both amended with urea fertilizer (100:1, w/w). T. harzianum cultured on ground mesocarp fibre was then used to coat seeds of Chinese kale (Brassica alboglabra Bailey) to control damping-off of seedlings caused by Pythium aphanidermatum. Biomass of T. harzianum cultured on ground mesocarp fibre of oil-palm was more effective than Captan and Benomyl, but less effective than Metalaxyl, in controlling damping-off of Chinese kale seedlings. Viability of T. harzianum growing on sorghum grains was reduced significantly during 7 months storage, followed by that of T. harzianum cultured on ground mesocarp fibre and oil-palm shell, both amended with urea fertilizer (46-0-0) at 100:1 (w/w).     

Shell cracking strength in almond (Prunus dulcis [Mill.] D.A. Webb.) and its implication in uses as a value-added product

Researchers are currently developing new value-added uses for almond shells, an abundant agricultural by-product. Almond varieties are distinguished by processors as being either hard or soft shelled, but these two broad classes of almond also exhibit varietal diversity in shell morphology and physical characters. By defining more precisely the physical and chemical characteristics of almond shells from different varieties, researchers will better understand which specific shell types are best suited for specific industrial processes. Eight diverse almond accessions were evaluated in two consecutive harvest seasons for nut and kernel weight, kernel percentage and shell cracking strength. Shell bulk density was evaluated in a separate year. Harvest year by almond accession interactions were highly significant (p  0.01) for each of the analyzed variables. Significant (p  0.01) correlations were noted for average nut weight with kernel weight, kernel percentage and shell cracking strength. A significant (p  0.01) negative correlation for shell cracking strength with kernel percentage was noted. In some cases shell cracking strength was independent of the kernel percentage which suggests that either variety compositional differences or shell morphology affect the shell cracking strength. The varietal characterization of almond shell materials will assist in determining the best value-added uses for this abundant agricultural by-product.     

Characterization of Bio-oil and Bio-char from Pyrolysis of Palm Oil Wastes

The residues from the palm oil industry are the main contributors to biomass waste in Malaysia, and these wastes require extra attention with respect to handling. The biomass waste is a renewable resource that can potentially be used to produce absorbents, fuels, and chemical feedstocks through the pyrolysis process. In this study, the wastes of palm shell, empty fruit bunches, and mesocarp fiber were characterized and then pyrolyzed in a fixed-bed reactor under the following conditions: a temperature of 500 °C, a nitrogen flow rate of 2 L/min and reaction time of 60 min. After pyrolysis, characterization of the products with an emphasis on the bio-oil and the bio-char was performed using various approaches (including Karl Fischer water-content tests, FTIR, SEM, TGA and CNH/O analyses). The results showed that the pyrolysis of palm oil wastes yielded more bio-oil than bio-char or non-condensable gases. The results also indicated that all of the bio-oils were acidic and contained high levels of oxygen. The bio-oils heating values were low and varied from 10.49 MJ/kg to 14.78 MJ/kg. The heating values of the bio-chars (20–30 MJ/kg) were higher than those of the bio-oils. Among the biomasses studied in this work, palm shell contained the highest level of lignin and showed the highest levels of bio-char yield and fixed and elemental carbon in the raw and bio-char form.     

Improving laccase production by employing different lignocellulosic wastes in submerged cultures of Trametes versicolor

Laccase production by the white-rot fungus Trametes versicolor (CBS100.29) grown in submerged cultures was studied. Addition of different insoluble lignocellulosic materials into the culture medium in order to enhance laccase production was investigated. The lignocellulosic materials were grape seeds, grape stalks and barley bran, selected because of their availability and low cost, since they are agro-industrial wastes abundant in most countries. Barley bran gave the highest activities, a maximum value of 639U/l, which was 10 times the value attained in the cultures without lignocellulosics addition. The decolourisation of a model dye, Phenol Red, by the ligninolytic fluids obtained in the above-mentioned cultures was investigated. Grape stalk and barley bran cultures showed the highest ability to decolourise the dye, attaining a percentage of decolourisation of around 60% in 72 h.     

A study of the fiber obtained from the water bamboo husks

The water bamboo husks are the main agricultural wastes of Taiwan in summer. In this study, the fiber obtained from the water bamboo husks was investigated by CP/MAS C13 NMR, elemental analysis, and adiabatic calorimeter. Moreover, the pyrolysis behavior of the fiber was studied by TGA, TGA-GC-MS and Py-GC-MS. The kinetic parameters of the pyrolysis process of the fiber were calculated by the modified Kilzer-Broido model, Coats and Redfern method, Harcourt and Esson relationship, and Ozawa method, respectively. The results imply that the fiber is cellulose I type. Moreover, the kinetic analysis reveals that the pyrolysis of the fiber in nitrogen is more likely to be the model D3 mechanism. However, the pyrolysis of the fiber in air is much more complicated and the activation energies of pyrolysis are quite different from those in nitrogen. Based on the TGA-GC-MS and Py-GC-MS study, the decomposed products from the pyrolysis of the fiber are of interest for their potential use as organic resources.     

One-step synthesis of amphiphilic diblock copolymers from bacterial poly([R]-3-hydroxybutyric acid)

Catalyzed transesterification in the melt is used to produce diblock copolymers of poly([R]-3-hydroxybutyric acid), PHB, and monomethoxy poly(ethylene glycol), mPEG, in a one-step process. Bacterial PHB of high molecular weight is depolymerized by consecutive and partly simultaneous reactions: pyrolysis and transesterification. The formation of diblocks is accomplished by the nucleophilic attack from the hydroxyl end-group of the mPEG catalyzed by bis(2-ethylhexanoate) tin. The resulting diblock copolymers are amphiphilic and self-assemble into sterically stabilized colloidal suspensions of PHB crystalline lamellae.     

Real-time monitoring of nitrile biotransformations by mid-infrared spectroscopy

In this study mid-infrared spectroscopy was used to follow the enzyme kinetics involved in nitrile biocatalysis using whole cell suspensions of the bacterium Rhodococcus rhodochrous LL100-21. The bacteria were grown on acetonitrile to induce a two-step enzymatic pathway. Acetonitrile was biotransformed to acetamide by a nitrile hydratase enzyme and subsequently to acetic acid (carboxylate ion) by an amidase enzyme. The bacteria were also grown on benzonitrile to induce a one-step enzymatic pathway. Benzonitrile was biotransformed directly to benzoic acid (carboxylate ion) by a nitrilase enzyme. These reactions were followed by React IR using a silicon probe and gave excellent quantitative and qualitative real-time data of both nitrile biocatalytic reactions. This study has shown that this novel technique has potentially useful applications in biocatalysis.     

The ATPase cycle of the mitochondrial Hsp90 analog Trap1

Hsp90 is an ATP-dependent molecular chaperone whose mechanism is not yet understood in detail. Here, we present the first ATPase cycle for the mitochondrial member of the Hsp90 family called Trap1 (tumor necrosis factor receptor-associated protein 1). Using biochemical, thermodynamic, and rapid kinetic methods we dissected the kinetics of the nucleotide-regulated rearrangements between the open and the closed conformations. Surprisingly, upon ATP binding, Trap1 shifts predominantly to the closed conformation (70%), but, unlike cytosolic Hsp90 from yeast, this process is rather slow at 0.076 s(-1). Because reopening (0.034 s(-1)) is about ten times faster than hydrolysis (k(hyd) = 0.0039 s(-1)), which is the rate-limiting step, Trap1 is not able to commit ATP to hydrolysis. The proposed ATPase cycle was further scrutinized by a global fitting procedure that utilizes all relevant experimental data simultaneously. This analysis corroborates our model of a two-step binding mechanism of ATP followed by irreversible ATP hydrolysis and a one-step product (ADP) release.     

Kinetics of binding the mRNA cap analogues to the translation initiation factor eIF4E under second-order reaction conditions

The kinetics of binding of five analogues of the 5'-mRNA cap, differing in size and electric charge, to the eukaryotic initiation factor eIF4E, at 20 degrees C, pH 7.2, and ionic strength of 150 mM, were measured, after mixing solutions of comparable concentrations of the reagents, in a stopped-flow spectrofluorimeter. The registered stopped-flow signals were fitted using an efficient software package, called Dyna Fit, based on a numerical solution of the kinetic rate equations for assumed reaction mechanisms. One-, two-, and three-step binding models were considered. The quality of fits for these models were compared using two statistical criteria: Akaike's Information Criterion and Bayesian Information Criterion. Based on resulting probabilities of the models, it was concluded that for all investigated ligands a one-step binding model has essentially no support in the experimental observations. Our conclusions were also analysed from the perspective of kinetic transients obtained for cap-eIF4E systems under the so called pseudo-first order reaction condition, which result in the linear correlation of the observed association rate constant with ligand concentration. The existence of such a linear correlation is usually considered as proof of a one-step binding mechanism. The kinetic and optical parameters, derived from fitting a two-step cap-binding model with the DynaFit, were used to simulate kinetic transients under pseudo-first order reaction conditions. It appeared that the observed association rate constants derived from these simulated transients are also linearly correlated with the ligand concentration. This indicated that these linear dependencies are not sufficient to conclude a one-step binding.     

Kinetic studies of overlapping pyrolysis reactions in industrial waste activated sludge

A sludge pyrolytic kinetics model was established in this study. Two types of sewage sludge from different industrial wastewater treatment plant produced different DTG (Derivative Thermogravimetry) shapes with an overlapping pattern. The multi-heating rate method was conducted to evaluate the kinetics for obtaining reasonable pyrolysis mechanisms and DTG curves were divided into several peaks using the Lorentz fitting method based on the composition of the sludge and the desire for precision. The peaks formed corresponded to the pyrolysis reactions of volatile matter, microbe cells, proteins, inorganic substances and char respectively, which can be reasonably explained based on the results from the flue gas analyzer and the chemical analysis. Two types of sewage sludge were found to have similar pyrolysis mechanisms. Reasonable reasons were also given to explain the distortion and lag observed in the DTG curves and pyrolysis mechanism.     

Low temperature conversion of rice husks, eucalyptus sawdust and peach stones for the production of carbon-like adsorbent

In this study, the feasibility of preparing effective adsorbents from unmitigated agroforestry wastes was investigated. Three different kinds of carbon-like materials were produced by low temperature pyrolysis (LTC, <500 degrees C) of the raw materials rice husks, eucalyptus sawdust and peach stones. The carbon-like materials were characterized by instrumental methods (SEM,X-RDS,BET,MAS-RMN,FTIR), physico-chemical adsorption (iodine-, methylene blue- and phenazone-number; acetic acid adsorption isotherm; textile dyes- and carbohydrate adsorption), and heat value determination. The produced materials, which showed appreciable adsorption capacity, can be considered as precursors for the production of active coal or even be used directly as well.     

Pyrolysis characteristics and kinetics of oak trees using thermogravimetric analyzer and micro-tubing reactor

In this work, pyrolysis characteristics were investigated using thermogravimetric analysis (TGA) at heating rates of 5-20 degrees C/min. Most of the materials were decomposed between 330 degrees C and 370 degrees C at each heating rate. The average activation energy was 236.2 kJ/mol when the pyrolytic conversion increased from 5% to 70%. The pyrolysis kinetics of oak trees was also investigated experimentally and mathematically. The experiments were carried out in a tubing reactor at a temperature range of 330-370 degrees C with a reaction time of 2-8 min. A lump model of combined series and parallel reactions for bio-oil and gas formation was proposed. The kinetic parameters were determined by nonlinear least-squares regression from the experimental data. It was found from the reaction kinetic constants that the predominant reaction pathway from the oak trees was to bio-oil formation rather than to gas formation at the investigated temperature range.     

Current challenges facing one-step production of l-ascorbic acid

l-ascorbic acid (L-AA, vitamin C) is an essential vitamin that is widely used as a nutrient or medicine in the pharmaceuticals, cosmetics, food, beverage and feed additive industries, and accounts for the largest share of the global vitamins market. L-AA is mainly produced by a classic two-step fermentation process that suffers from the use of a multi-step mixed culture system and two rounds of sterilisation, which significantly increases the cost of the final product. One-step fermentation has been attempted, but a method rivalling the efficiency of the two-step process has not yet been achieved on an industrial scale. In this review, based on the current classical two-step fermentation processes and other potential routes for L-AA production, the challenges and pitfalls of a one-step fermentation process are summarised. The prospects for one-step fermentation production of L-AA and how this might be achieved are also discussed.     

Effective and site-specific phosphoramidation reaction for universally labeling nucleic acids

Here we report efficient and selective postsynthesis labeling strategies, based on an advanced phosphoramidation reaction, for nucleic acids of either synthetic or enzyme-catalyzed origin. The reactions provided phosphorimidazolide intermediates of DNA or RNA which, whether reacted in one pot (one-step) or purified (two-step), were directly or indirectly phosphoramidated with label molecules. The acquired fluorophore-labeled nucleic acids, prepared from the phosphoramidation reactions, demonstrated labeling efficacy by their F/N ratio values (number of fluorophores per molecule of nucleic acid) of 0.02–1.2 which are comparable or better than conventional postsynthesis fluorescent labeling methods for DNA and RNA. Yet, PCR and UV melting studies of the one-step phosphoramidation-prepared FITC-labeled DNA indicated that the reaction might facilitate nonspecific hybridization in nucleic acids. Intrinsic hybridization specificity of nucleic acids was, however, conserved in the two-step phosphoramidation reaction. The reaction of site-specific labeling nucleic acids at the 5′-end was supported by fluorescence quenching and UV melting studies of fluorophore-labeled DNA. The two-step phosphoramidation-based, effective, and site-specific labeling method has the potential to expedite critical research including visualization, quantification, structural determination, localization, and distribution of nucleic acids in vivo and in vitro.     

Enzymatic enrichment of egg-yolk phosphatidylcholine with α-linolenic acid

α-Linolenic acid (ALA) was incorporated at 28% into the sn-1 position of egg-yolk phospatidylcholine using Novozyme 435 in one-step transesterification process. Using phospholipase A₂ in a two-step process gave 25% incorporation of ALA into the sn-2 position.     

The comparative kinetic analysis of Acetocell and Lignoboost® lignin pyrolysis: the estimation of the distributed reactivity models

The non-isothermal pyrolysis kinetics of Acetocell (the organosolv) and Lignoboost? (kraft) lignins, in an inert atmosphere, have been studied by thermogravimetric analysis. Using isoconversional analysis, it was concluded that the apparent activation energy for all lignins strongly depends on conversion, showing that the pyrolysis of lignins is not a single chemical process. It was identified that the pyrolysis process of Acetocell and Lignoboost? lignin takes place over three reaction steps, which was confirmed by appearance of the corresponding isokinetic relationships (IKR). It was found that major pyrolysis stage of both lignins is characterized by stilbene pyrolysis reactions, which were subsequently followed by decomposition reactions of products derived from the stilbene pyrolytic process. It was concluded that non-isothermal pyrolysis of Acetocell and Lignoboost? lignins can be best described by n-th (n>1) reaction order kinetics, using the Weibull mixture model (as distributed reactivity model) with alternating shape parameters.     

Characteristics of Eucheuma cottonii waste from East Malaysia: physical,thermal and chemical composition

The aim of this paper was to examine the characteristics of Eucheuma cottonii waste in order to analyse its potential as renewable material. The morphology of Eucheuma cottonii (raw and wastes) was investigated through scanning electron microscopy (SEM), the thermal behaviour through thermogravimetric analysis (TGA) and the physical properties through FT-IR, XRD, gas pycnometer, particle size analyser, water absorption and moisture content analysis. The chemical compositions were determined by using acid detergent fibre (ADF), neutral detergent fibre (NDF) and acid detergent lignin (ADL) analysis. It was found that Eucheuma cottonii wastes have better thermal stability, higher crude fibre content, lower moisture content and similar density to the raw Eucheuma cottonii, which suggests that these biomass wastes have good potential as renewable filler material.     

Sustainable utilization of oil palm wastes for bioactive phytochemicals for the benefit of the oil palm and nutraceutical industries

For a hectare of oil palm plantation, about 21.63 tonnes of biomass comprising 20.43 % empty fruit bunches, 5.09 % palm kernel shells, 11.65 % oil palm trunks, 50.30 % oil palm fronds and 12.53 % palm pressed fibre is produced per year as wastes which keep raising many environmental concerns as most of them are incinerated and dumped at open sites. Oil palm wastes are found to contain phytochemicals which have anti-cancer, antioxidants and other vital biological activities. About 17–65 kg of carotenoids, 0.1–60 kg phenolic compounds, 0.6–39 kg sterols and 4.0–62 kg tocols could be extracted from these wastes which would not only boost the economy but also help improve human health and promote clean environments. This study assesses the phytochemistry of oil palm wastes and their pharmacological activities beneficial to the nutraceutical industry with the view of utilizing oil palm wastes for sustainable development.