Changes in methane oxidation activity and methanotrophic community composition in saline alkaline soils

The soil of the former Lake Texcoco is a saline alkaline environment where anthropogenic drainage in some areas has reduced salt content and pH. Potential methane (CH₄) consumption rates were measured in three soils of the former Lake Texcoco with different electrolytic conductivity (EC) and pH, i.e. Tex-S1 a >18 years drained soil (EC 0.7 dS m^?1, pH 8.5), Tex-S2 drained for ~10 years (EC 9.0 dS m^?1, pH 10.3) and the undrained Tex-S3 (EC 84.8 dS m^?1, pH 10.3). An arable soil from Alcholoya (EC 0.7 dS m^?1, pH 6.7), located nearby Lake Texcoco was used as control. Methane oxidation in the soil Tex-S1 (lowest EC and pH) was similar to that in the arable soil from Alcholoya (32.5 and 34.7 mg CH₄ kg^?1 dry soil day^?1, respectively). Meanwhile, in soils Tex-S2 and Tex-S3, the potential CH₄ oxidation rates were only 15.0 and 12.8 mg CH₄ kg^?1 dry soil day^?1, respectively. Differences in CH₄ oxidation were also related to changes in the methane-oxidizing communities in these soils. Sequence analysis of pmoA gene showed that soils differed in the identity and number of methanotrophic phylotypes. The Alcholoya soil and Tex-S1 contained phylotypes grouped within the upland soil cluster gamma and the Jasper Ridge, California JR-2 clade. In soil Tex-S3, a phylotype related to Methylomicrobium alcaliphilum was detected.     

Neutrophilic, nitrate-dependent, Fe(II) oxidation by a Dechloromonas species

A species of Dechloromonas, strain UWNR4, was isolated from a nitrate-reducing, enrichment culture obtained from Wisconsin River (USA) sediments. This strain was characterized for anaerobic oxidation of both aqueous and chelated Fe(II) coupled to nitrate reduction at circumneutral pH. Dechloromonas sp. UWNR4 was incubated in anoxic batch reactors in a defined medium containing 4.5–5 mM NO₃ ^?, 6 mM Fe²⁺ and 1–1.8 mM acetate. Strain UWNR4 efficiently oxidized Fe²⁺ with 90 % oxidation of Fe²⁺ after 3 days of incubation. However, oxidation of Fe²⁺ resulted in Fe(III)-hydroxide-encrusted cells and loss of metabolic activity, suggested by inability of the cells to utilize further additions of acetate. In similar experiments with chelated iron (Fe(II)-EDTA), encrusted cells were not produced and further additions of acetate and Fe(II)-EDTA could be oxidized. Although members of the genus Dechloromonas are primarily known as perchlorate and nitrate reducers, our findings suggest that some species could be members of microbial communities influencing iron redox cycling in anoxic, freshwater sediments. Our work using Fe(II)-EDTA also demonstrates that Fe(II) oxidation was microbially catalyzed rather than a result of abiotic oxidation by biogenic NO₂ ^?.     

Transgenic Bt rice has adverse impacts on CH4 flux and rhizospheric methanogenic archaeal and methanotrophic bacterial communities

Background and Aims

The effect of transgenic insect-resistant crops on soil microorganisms has become an issue of public concern. The goal of this study was to firstly realize the variation of in situ methane (CH₄) emission flux and methanogenic and methanotrophic communities due to planting transgenic Bt rice (Bt) cultivar.

Methods

CH₄ emitted from paddy soil was collected by static closed chamber technique. Denaturing gradient gel electrophoresis and real-time PCR methods were employed to analyze methanogenic archaeal and methanotrophic bacterial community structure and abundance.

Results

Results showed that planting Bt rice cultivar effectively reduced in situ CH₄ emission flux and methanogenic archaeal and methanotrophic bacterial community abundance and diversity. Data analysis showed that in situ CH₄ emission flux increased significantly with the increase of methanogenic archaeal abundance (R ² ?=?0.839, p?<?0.001) and diversity index H′ (R ² ?=?0.729, p?<?0.05), whereas was not obviously related to methanotrophic bacterial community.

Conclusions

Our results suggested that the lower in situ CH₄ emission flux from Bt soil may result from lower methanogenic archaeal community abundance and diversity, lower methanogenic activity and higher methanotrophic activity. Moreover, our results inferred that specific functional microorganisms may be a more sensitive indicator than the total archaeal, bacterial or fungal population to assess the effects of transgenic insect-resistant plants on soil microorganisms.     

Circadian methane oxidation in the root zone of rice plants

In the root zone of rice plants aerobic methanotrophic bacteria catalyze the oxidation of CH₄ to CO₂, thereby reducing CH₄ emissions from paddy soils to the atmosphere. However, methods for in situ quantification of microbial processes in paddy soils are scarce. Here we adapted the push–pull tracer-test (PPT) method to quantify CH₄ oxidation in the root zone of potted rice plants. During a PPT, a test solution containing CH₄ ± O₂ as reactant(s), Cl^? and Ar as nonreactive tracers, and BES as an inhibitor of CH₄ production was injected into the root zone at different times throughout the circadian cycle (daytime, early nighttime, late nighttime). After a 2-h incubation phase, the test solution/pore-water mixture was extracted from the same location and rates of CH₄ oxidation were calculated from the ratio of measured reactant and nonreactive tracer concentrations. In separate rice pots, O₂ concentrations in the vicinity of rice roots were measured throughout the circadian cycle using a fiber-optic sensor. Results indicated highly variable CH₄ oxidation rates following a circadian pattern. Mean rates at daytime and early nighttime varied from 62 up to 451 μmol l^?1 h^?1, whereas at late nighttime CH₄ oxidation rates were low, ranging from 13 to 37 μmol l^?1 h^?1. Similarly, daytime O₂ concentration in the vicinity of rice roots increased to up to 250% air saturation, while nighttime O₂ concentration dropped to below detection (<0.15% air saturation). Our results suggest a functional link between root-zone CH₄ oxidation and photosynthetic O₂ supply.     

Trace gas flux and the influence of short-term soil water and temperature dynamics in Australian sheep grazed pastures of differing productivity

Temperate pastures are often managed with P fertilizers and N₂-fixing legumes to maintain and increase pasture productivity which may lead to greater nitrous oxide (N₂O) emissions and reduced methane (CH₄) uptake. However, the diel and inter-daily variation in N₂O and CH₄ flux in pastures is poorly understood, especially in relation to key environmental drivers. We investigated the effect of pasture productivity, rainfall, and changing soil moisture and temperature upon short-term soil N₂O and CH₄ flux dynamics during spring in sheep grazed pasture systems in southeastern Australia. N₂O and CH₄ flux was measured continuously in a High P (23 kg P ha^?1 yr^?1) and No P pasture treatment and in a sheep camp area in a Low P (4 kg P ha^?1 yr^?1) pasture for a four week period in spring 2005 using an automated trace gas system. Although pasture productivity was three-fold greater in the High P than No P treatment, mean CH₄ uptake was similar (?6.3?±?SE 0.3 to ?8.6?±?0.4 μg C m^?2 hr^?1) as were mean N₂O emissions (6.5 to 7.9?±?0.8 μg N m^?2 hr^?1), although N₂O flux in the No P pasture did not respond to changing soil water conditions. N₂O emissions were greatest in the Low P sheep camp (12.4 μg?±?1.1 N m^?2 hr^?1) where there were also net CH₄ emissions of 5.2?±?0.5 μg C m^?2 hr^?1. There were significant, but weak, relationships between soil water and N₂O emissions, but not between soil water and CH₄ flux. The diel temperature cycle strongly influenced CH₄ and N₂O emissions, but this was often masked by the confounding covariate effects of changing soil water content. There were no consistently significant differences in soil mineral N or gross N transformation rates, however, measurements of substrate induced respiration (SIR) indicated that soil microbial processes in the highly productive pasture are more N limited than P limited after >20 years of P fertilizer addition. Increased productivity, through P fertilizer and legume management, did not significantly increase N₂O emissions, or reduce CH₄ uptake, during this 4 week measurement period, but the lack of an N₂O response to rainfall in the No P pasture suggests this may be evident over a longer measurement period. This study also suggests that small compacted and nutrient enriched areas of grazed pastures may contribute greatly to the overall N₂O and CH₄ trace gas balance.     

Microbial and Environmental Controls of Methane Fluxes Along a Soil Moisture Gradient in a Pacific Coastal Temperate Rainforest

Most studies of greenhouse gas fluxes from forest soils in the coastal rainforest have considered carbon dioxide (CO₂), whereas methane (CH₄) has not received the same attention. Soil hydrology is a key driver of CH₄ dynamics in ecosystems, but the impact on the function and distribution of the underlying microbial communities involved in CH₄ cycling and the resultant net CH₄ exchange is not well understood at this scale. We studied the growing season variations of in situ CH₄ fluxes, microbial gene abundances of methanotrophs (CH₄ oxidizers) and methanogens (CH₄ producers), soil hydrology, and nutrient availability in three typical forest types across a soil moisture gradient. CH₄ displayed a spatial variability changing from a net uptake in the upland soils (3.9–46 µmol CH₄ m^?2 h^?1) to a net emission in the wetter soils (0–90 μmol CH₄ m^?2 h^?1). Seasonal variations of CH₄ fluxes were related to soil hydrology in both upland and wet soils. Thus, in the upland soils, uptake rates increased with the decreasing soil moisture, whereas CH₄ emission was inversely related to the water table depth in the wet soils. Spatial variability of CH₄ exchange was related to the abundance of genes involved in CH₄ oxidation and production, but there was no indication of a temporal link between microbial groups and CH₄ exchange. Our data show that the abundances of genes involved in CH₄ oxidation and production are strongly influenced by soil moisture and each other and grouped by the upland–wetland classification but not forest type.     

Carbon dioxide and methane emissions from interfluvial wetlands in the upper Negro River basin, Brazil

Extensive interfluvial wetlands occur in the upper Negro River basin (Brazil) and contain a mosaic of vegetation dominated by emergent grasses and sedges with patches of shrubs and palms. To characterize the release of carbon dioxide and methane from these habitats, diffusive and ebullitive emissions and transport through plant aerenchyma were measured monthly during 2005 in permanently and seasonally flooded areas. CO₂ emissions averaged 2193 mg C m^?2 day^?1. Methane was consumed in unflooded environments and emitted in flooded environments with average values of ?4.8 and 60 mg C m^?2 day^?1, respectively. Bubbles were emitted primarily during falling water periods when hydrostatic pressure at the sediment?Cwater interface declined. CO₂ and CH₄ emissions increased when dissolved O₂ decreased and vegetation was more abundant. Total area and seasonally varying flooded areas for two wetlands, located north and south of the Negro River, were determined through analysis of synthetic aperture radar and optical remotely sensed data. The combined areas of these two wetlands (3000 km²) emitted 1147 Gg C year^?1 as CO₂ and 31 Gg C year^?1 as CH₄. If these rates are extrapolated to the area occupied by hydromorphic soils in the upper Negro basin, 63 Tg C year^?1 of CO₂ and 1.7 Tg C year^?1 as CH₄ are estimated as the regional evasion to the atmosphere.     

Atmospheric methane uptake by tropical montane forest soils and the contribution of organic layers

Microbial oxidation in aerobic soils is the primary biotic sink for atmospheric methane (CH₄), a powerful greenhouse gas. Although tropical forest soils are estimated to globally account for about 28% of annual soil CH₄ consumption (6.2 Tg CH₄ year^?1), limited data are available on CH₄ exchange from tropical montane forests. We present the results of an extensive study on CH₄ exchange from tropical montane forest soils along an elevation gradient (1,000, 2,000, 3,000 m) at different topographic positions (lower slope, mid-slope, ridge position) in southern Ecuador. All soils were net atmospheric CH₄ sinks, with decreasing annual uptake rates from 5.9 kg CH₄–C ha^?1 year^?1 at 1,000 m to 0.6 kg CH₄–C ha^?1 year^?1 at 3,000 m. Topography had no effect on soil atmospheric CH₄ uptake. We detected some unexpected factors controlling net methane fluxes: positive correlations between CH₄ uptake rates, mineral nitrogen content of the mineral soil and with CO₂ emissions indicated that the largest CH₄ uptake corresponded with favorable conditions for microbial activity. Furthermore, we found indications that CH₄ uptake was N limited instead of inhibited by NH₄ ⁺. Finally, we showed that in contrast to temperate regions, substantial high affinity methane oxidation occurred in the thick organic layers which can influence the CH₄ budget of these tropical montane forest soils. Inclusion of elevation as a co-variable will improve regional estimates of methane exchange in these tropical montane forests.     

Changes of methane and nitrous oxide emissions in a transition bog in central Germany (German National Park Harz Mountains) after rewetting

During the last decades, various renaturation programmes have been initialized to recover nutrient sink and ecological functions of peatlands by rewetting. Rewetting, however, often results in the formation of hotspots for methane (CH₄) emissions and in temporal dieback of local vegetation. The present study aimed at quantifying changes of CH₄ and nitrous oxide (N₂O) emissions in a peatland currently under continuous rewetting conditions. Emissions where studied at a permanently flooded site and a non-flooded peat site with fluctuating water tables by using common closed chamber method. The permanently flooded site revealed extremely high CH₄ emissions (up to 1195 mg C m^?2 d^?1) which were positively correlated with temperature, nutrient content, dissolved organic carbon and nitrogen concentration of the peat soil water. In contrast, the non-flooded peat site, with lower and fluctuating water tables (WT), showed significantly lower CH₄ emissions and an increasing trend of CH₄ release associated with a generally increasing WT caused by the progressing rewetting process. Lower N₂O emissions (<24 µg N m^?2 d^?1) were observed at the flooded site. By contrast, the non-flooded peat site with fluctuating WT showed significantly higher N₂O emissions (up to 4178 µg N m^?2 d^?1), in particular at high temperatures during summer time. The present results indicate that permanently flooded conditions during rewetting processes might cause higher CH₄ emissions compared to fluctuating WT which in contrast might enhance N₂O emissions. In total, however, no decreasing trend for CH₄ emissions throughout the five-year renaturation period could be found. At least for N₂O we observed a decreasing trend during rewetting.     

Atmospheric CH4 oxidation by Arctic permafrost and mineral cryosols as a function of water saturation and temperature

The response of methanotrophic bacteria capable of oxidizing atmospheric CH₄ to climate warming is poorly understood, especially for those present in Arctic mineral cryosols. The atmospheric CH₄ oxidation rates were measured in microcosms incubated at 4 °C and 10 °C along a 1‐m depth profile and over a range of water saturation conditions for mineral cryosols containing type I and type II methanotrophs from Axel Heiberg Island (AHI), Nunavut, Canada. The cryosols exhibited net consumption of ~2 ppmv CH₄ under all conditions, including during anaerobic incubations. Methane oxidation rates increased with temperature and decreased with increasing water saturation and depth, exhibiting the highest rates at 10 °C and 33% saturation at 5 cm depth (260 ± 60 pmol CH₄ gdw^?1 d^?1). Extrapolation of the CH₄ oxidation rates to the field yields net CH₄ uptake fluxes ranging from 11 to 73 μmol CH₄ m^?2 d^?1, which are comparable to field measurements. Stable isotope mass balance indicates ~50% of the oxidized CH₄ is incorporated into the biomass regardless of temperature or saturation. Future atmospheric CH₄ uptake rates at AHI with increasing temperatures will be determined by the interplay of increasing CH₄ oxidation rates vs. water saturation and the depth to the water table during summer thaw.     

Spatial variation in flux, δ<Superscript>13</Superscript>C and δ<Superscript>2</Superscript>H of methane in a small Arctic lake with fringing wetland in western Greenland

Small lakes in northern latitudes represent a significant source of CH₄ to the atmosphere that is predicted to increase with warming in the Arctic. Yet, whole-lake CH₄ budgets are lacking as are measurements of δ¹³C-CH₄ and δ²H-CH₄. In this study, we quantify spatial variability of diffusive and ebullitive fluxes of CH₄ and corresponding δ¹³C-CH₄ and δ²H-CH₄ in a small, Arctic lake system with fringing wetland in southwestern Greenland during summer. Net CH₄ flux was highly variable, ranging from an average flux of 7 mg CH₄ m^?2 d^?1 in the deep-water zone to 154 mg CH₄ m^?2 d^?1 along the lake margin. Diffusive flux accounted for ~8.5 % of mean net CH₄ flux, with plant-mediated and ebullitive flux accounting for the balance of the total net flux. Methane content of emitted ebullition was low (mean ± SD 10 ± 17 %) compared to previous studies from boreal lakes and wetlands. Isotopic composition of net CH₄ emissions varied widely throughout the system, with δ¹³C-CH₄ ranging from ?66.2 to ?55.5 ‰, and δ²H-CH₄ ranging from ?345 to ?258 ‰. Carbon isotope composition of CH₄ in ebullitive flux showed wider variation compared to net flux, ranging from ?69.2 to ?49.2 ‰. Dissolved CH₄ concentrations were highest in the sediment and decreased up the water column. Higher concentrations of CH₄ in the hypoxic deep water coincided with decreasing dissolved O₂ concentrations, while methanotrophic oxidation dominated in the epilimnion based upon decreasing concentrations and increasing values of δ¹³C-CH₄ and δ²H-CH₄. The most depleted ¹³C- and ²H-isotopic values were observed in profundal bottom waters and in subsurface profundal sediments. Based upon paired δ¹³C and δ²H observations of CH₄, acetate fermentation was likely the dominant production pathway throughout the system. However, isotopic ratios of CH₄ in deeper sediments were consistent with mixing/transition between CH₄ production pathways, indicating a higher contribution of the CO₂ reduction pathway. The large spatial variability in fluxes of CH₄ and in isotopic composition of CH₄ throughout a single lake system indicates that the underlying mechanisms controlling CH₄ cycling (production, consumption and transport) are spatially heterogeneous. Net flux along the lake margin dominated whole-lake flux, suggesting the nearshore littoral area dominates CH₄ emissions in these systems. Future studies of whole-lake CH₄ budgets should consider this significant spatial heterogeneity.     

Seasonal and spatial variations of methane emissions from coastal marshes in the northern Yellow River estuary, China

Aims and methods

To evaluate the seasonal and spatial variations of methane (CH₄) emissions and understand the controlling factors, we measured CH₄ fluxes and their environmental variables for the first time by a static chamber technique in high Suaeda salsa marsh (HSM), middle S. salsa marsh (MSM), low S. salsa marsh (LSM) and bare flat (BF) in the northern Yellow River estuary throughout a year.

Results

CH₄ emissions from coastal marsh varied throughout different times of the day and significant differences were observed in some sampling periods (p?<?0.05). Over all sampling periods, CH₄ fluxes averaged between ?0.392 mgCH₄ m^?2?h^?1 and 0.495 mgCH₄ m^?2?h^?1, and emissions occurred during spring (0.008 mgCH₄ m^?2?h^?1) and autumn (0.068 mgCH₄ m^?2?h^?1) while sinks were observed during summer (?0.110 mgCH₄ m^?2?h^?1) and winter (?0.009 mgCH₄ m^?2?h^?1). CH₄ fluxes from the four marshes were not significantly different (p?>?0.05), and emissions occurred in LSM (0.026 mgCH₄ m^?2?h^?1) and BF (0.055 mgCH₄ m^?2?h^?1) while sinks were observed in HSM (?0.035 mgCH₄ m^?2?h^?1) and MSM (?0.022 mgCH₄ m^?2?h^?1). The annual average CH₄ flux from the intertidal zone was 0.002 mgCH₄ m^?2?h^?1, indicating that coastal marsh acted as a weak CH₄ source. Temporal variations of CH₄ emission were related to the interactions of abiotic factors (temperatures, soil moisture and salinity) and the variations of limited C and mineral N in sediments, while spatial variations were mainly affected by the vegetation composition at spatial scale.

Conclusions

This study observed a large spatial variation of CH₄ fluxes across the coastal marsh of the Yellow River estuary (CV?=?7856.25 %), suggesting that the need to increase the spatial replicates at fine scales before the regional CH₄ budget was evaluated precisely. With increasing exogenous nitrogen loading to the Yellow River estuary, the magnitude of CH₄ emission might be enhanced, which should also be paid more attentions as the annual CH₄ inventory was assessed accurately.     

Leaf Litter Fuels Methanogenesis Throughout Decomposition in a Forested Peatland

Decomposing leaf litter is a large supply of energy and nutrients for soil microorganisms. How long decaying leaves continue to fuel anaerobic microbial activity in wetland ecosystems is poorly understood. Here, we compare leaf litter from 15 tree species with different growth forms (angiosperms and gymnosperms, deciduous, and longer life span), using litterbags positioned for up to 4 years in a forested peatland in New York State. Periodically, we incubated partially decayed residue per species with fresh soil to assess its ability to fuel microbial methane (CH₄) production and concomitant anaerobic carbon dioxide (CO₂) production. Decay rates varied by leaf type: deciduous angiosperm > evergreen gymnosperm > deciduous gymnosperm. Decay rates were slower in leaf litter with a large concentration of lignin. Soil with residue of leaves decomposed for 338 days had greater rates of CH₄ production (5.8 µmol g^?1 dry mass d^?1) than less decomposed (<0.42 µmol g^?1 dry mass d^?1) or more decomposed (2.1 µmol g^?1 dry mass d^?1) leaf residue. Species-driven differences in their ability to fuel CH₄ production were evident throughout the study, whereas concomitant rates of CO₂ production were more similar among species and declined with degree of decomposition. Methane production rates exhibited a positive correlation with pectin and the rate of pectin decomposition. This link between leaf litter decay rates, biochemical components in leaves, and microorganisms producing greenhouse gases should improve predictions of CH₄ production in wetlands.     

Effect of water table on greenhouse gas emissions from peatland mesocosms

Peatland landscapes typically exhibit large variations in greenhouse gas (GHG) emissions due to microtopographic and vegetation heterogeneity. As many peatland budgets are extrapolated from small-scale chamber measurements it is important to both quantify and understand the processes underlying this spatial variability. Here we carried out a mesocosm study which allowed a comparison to be made between different microtopographic features and vegetation communities, in response to conditions of both static and changing water table. Three mesocosm types (hummocks?+?Juncus effusus, hummocks?+?Eriophorum vaginatum, and hollows dominated by moss) were subjected to two water table treatments (0–5 cm and 30–35 cm depth). Measurements were made of soil-atmosphere GHG exchange, GHG concentration within the peat profile and soil water solute concentrations. After 14 weeks the high water table group was drained and the low water table group flooded. Measurement intensity was then increased to examine the immediate response to change in water table position. Mean CO₂, CH₄ and N₂O exchange across all chambers was 39.8 μg m^?2 s^?1, 54.7 μg m^?2 h^?1 and ?2.9 μg m^?2 h^?1, respectively. Hence the GHG budget was dominated in this case by CO₂ exchange. CO₂ and N₂O emissions were highest in the low water table treatment group; CH₄ emissions were highest in the saturated mesocosms. We observed a strong interaction between mesocosm type and water table for CH₄ emissions. In contrast to many previous studies, we found that the presence of aerenchyma-containing vegetation reduced CH₄ emissions. A significant pulse in both CH₄ and N₂O emissions occurred within 1–2 days of switching the water table treatments. This pulsing could potentially lead to significant underestimation of landscape annual GHG budgets when widely spaced chamber measurements are upscaled.     

An in-depth look into a tropical lowland forest soil: nitrogen-addition effects on the contents of N2O, CO2 and CH4 and N2O isotopic signatures down to 2-m depth

Atmospheric nitrogen (N) deposition is rapidly increasing in tropical regions. We investigated how a decade of experimental N addition (125 kg N ha^?1 year^?1) to a seasonal lowland forest affected depth distribution and contents of soil nitrous oxide (N₂O), carbon dioxide (CO₂) and methane (CH₄), as well as natural abundance isotopic signatures of N₂O, nitrate (NO₃ ^?) and ammonium (NH₄ ⁺). In the control plots during dry season, we deduced limited N₂O production by denitrification in the topsoil (0.05–0.40 m) as indicated by: ambient N₂O concentrations and ambient ¹⁵N-N₂O signatures, low water-filled pore space (35–60%), and similar ¹⁵N signatures of N₂O and NO₃ ^?. In the subsoil (0.40–2.00 m), we detected evidence of N₂O reduction to N₂ during upward diffusion, indicating denitrification activity. During wet season, we found that N₂O at 0.05–2.00 m was mainly produced by denitrification with substantial further reduction to N₂, as indicated by: lighter ¹⁵N-N₂O than ¹⁵N-NO₃ ^? throughout the profile, and increasing N₂O concentrations with simultaneously decreasing ¹⁵N-N₂O enrichment with depth. These interpretations were supported by an isotopomer map and by a positive correlation between ¹⁸O-N₂O and ¹⁵N-N₂O site preferences. Long-term N addition did not affect dry-season soil N₂O-N contents, doubled wet-season soil N₂O-N contents, did not affect ¹⁵N signatures of NO₃ ^?, and reduced wet-season ¹⁵N signatures of N₂O compared to the control plots. These suggest that the increased NO₃ ^? concentrations have stimulated N₂O production and decreased N₂O-to-N₂ reduction. Soil CO₂-C contents did not differ between treatments, implying that N addition essentially did not influence soil C cycling. The pronounced seasonality in soil respiration was largely attributable to enhanced topsoil respiration as indicated by a wet-season increase in the topsoil CO₂-C contents. The N-addition plots showed reduced dry-season soil CH₄-C contents and threshold CH₄ concentrations were reached at a shallower depth compared to the control plots, revealing an N-induced stimulation of methanotrophic activity. However, the net soil CH₄ uptake rates remained similar between treatments possibly because diffusive CH₄ supply from the atmosphere largely limited CH₄ oxidation.     

Soil N and C trace gas fluxes and microbial soil N turnover in a sessile oak (Quercus petraea (Matt.) Liebl.) forest in Hungary

During two intensive field campaigns in summer and autumn 2004 nitrogen (N₂O, NO/NO₂) and carbon (CO₂, CH₄) trace gas exchange between soil and the atmosphere was measured in a sessile oak (Quercus petraea (Matt.) Liebl.) forest in Hungary. The climate can be described as continental temperate. Fluxes were measured with a fully automatic measuring system allowing for high temporal resolution. Mean N₂O emission rates were 1.5 μg N m⁻² h⁻¹ in summer and 3.4 μg N m⁻² h⁻¹ in autumn, respectively. Also mean NO emission rates were higher in autumn (8.4 μg N m⁻² h⁻¹) as compared to summer (6.0 μg N m⁻² h⁻¹). However, as NO₂ deposition rates continuously exceeded NO emission rates (−9.7 μg N m⁻² h⁻¹ in summer and −18.3 μg N m⁻² h⁻¹ in autumn), the forest soil always acted as a net NO _x sink. The mean value of CO₂ fluxes showed only little seasonal differences between summer (81.1 mg C m⁻² h⁻¹) and autumn (74.2 mg C m⁻² h⁻¹) measurements, likewise CH₄uptake (summer: −52.6 μg C m⁻² h⁻¹; autumn: −56.5 μg C m⁻² h⁻¹). In addition, the microbial soil processes net/gross N mineralization, net/gross nitrification and heterotrophic soil respiration as well as inorganic soil nitrogen concentrations and N₂O/CH₄ soil air concentrations in different soil depths were determined. The respiratory quotient (ΔCO_{2 resp} ΔO_{2 resp}⁻¹) for the uppermost mineral soil, which is needed for the calculation of gross nitrification via the Barometric Process Separation (BaPS) technique, was 0.8978 ± 0.008. The mean value of gross nitrification rates showed only little seasonal differences between summer (0.99 μg N kg⁻¹ SDW d⁻¹) and autumn measurements (0.89 μg N kg⁻¹ SDW d⁻¹). Gross rates of N mineralization were highest in the organic layer (20.1–137.9 μg N kg⁻¹ SDW d⁻¹) and significantly lower in the uppermost mineral layer (1.3–2.9 μg N kg⁻¹ SDW d⁻¹). Only for the organic layer seasonality in gross N mineralization rates could be demonstrated, with highest mean values in autumn, most likely caused by fresh litter decomposition. Gross mineralization rates of the organic layer were positively correlated with N₂O emissions and negatively correlated with CH₄ uptake, whereas soil CO₂ emissions were positively correlated with heterotrophic respiration in the uppermost mineral soil layer. The most important abiotic factor influencing C and N trace gas fluxes was soil moisture, while the influence of soil temperature on trace gas exchange rates was high only in autumn.     

Methanotrophic community structure and activity under warming and grazing of alpine meadow on the Tibetan Plateau

Knowledge about methanotrophs and their activities is important to understand the microbial mediation of the greenhouse gas CH₄ under climate change and human activities in terrestrial ecosystems. The effects of simulated warming and sheep grazing on methanotrophic abundance, community composition, and activity were studied in an alpine meadow soil on the Tibetan Plateau. There was high abundance of methanotrophs (1.2–3.4 × 10⁸ pmoA gene copies per gram of dry weight soil) assessed by real-time PCR, and warming significantly increased the abundance regardless of grazing. A total of 64 methanotrophic operational taxonomic units (OTUs) were obtained from 1,439 clone sequences, of these OTUs; 63 OTUs (98.4%) belonged to type I methanotrophs, and only one OTU was Methylocystis of type II methanotrophs. The methanotroph community composition and diversity were not apparently affected by the treatments. Warming and grazing significantly enhanced the potential CH₄ oxidation activity. There were significantly negative correlations between methanotrophic abundance and soil moisture and between methanotrophic abundance and NH₄–N content. The study suggests that type I methanotrophs, as the dominance, may play a key role in CH₄ oxidation, and the alpine meadow has great potential to consume more CH₄ under future warmer and grazing conditions on the Tibetan Plateau.     

Atmospheric methane removal by methane-oxidizing bacteria immobilized on porous building materials

Biological treatment using methane-oxidizing bacteria (MOB) immobilized on six porous carrier materials have been used to mitigate methane emission. Experiments were performed with different MOB inoculated in building materials at high (~20 % (v/v)) and low (~100 ppmv) methane mixing ratios. Methylocystis parvus in autoclaved aerated concrete (AAC) exhibited the highest methane removal rate at high (28.5?±?3.8 μg CH₄ g^?1 building material h^?1) and low (1.7?±?0.4 μg CH₄ g^?1 building material h^?1) methane mixing ratio. Due to the higher volume of pores with diameter >5 μm compared to other materials tested, AAC was able to adsorb more bacteria which might explain for the higher methane removal observed. The total methane and carbon dioxide-carbon in the headspace was decreased for 65.2?±?10.9 % when M. parvus in Ytong was incubated for 100 h. This study showed that immobilized MOB on building materials could be used to remove methane from the air and also act as carbon sink.     

Site specific and regional estimates of methane uptake by tropical rainforest soils in north eastern Australia

Methane flux from rainforest soils in northeast Queensland, Australia, was investigated using a combination of laboratory, field and simulation modelling. In aerobic laboratory incubations, CH₄ uptake in the top 0.1 m of the soil (?2.5 to ?7.3 μg CH₄ kg^?1 SDW day^?1) is approximately one order of magnitude higher than CH₄ production under anaerobic conditions. The highest CH₄ uptake, as well as potential CH₄ production is found in the uppermost C rich soil layers. Detailed measurements from three contrasting rainforest sites identified the soils to be functioning as sinks for atmospheric CH₄. Fifteen months continuous measurement at one of the lowland rainforest sites showed that the seasonality of CH₄ uptake was mainly driven by changes in soil moisture rather than by temperature changes. Maximum CH₄ uptake (109 μg CH₄ m^?2 h^?1) was observed during dry season conditions, whereas during the wet season, CH₄ uptake decreased significantly to near zero. Based on our laboratory experiments and on published literature we developed a semi-empirical CH₄ module for the biogeochemical model ForestDNDCtropica. Tests at several sites showed the robustness of our modelling approach with mean simulated values within 12% of observed values. To estimate regional CH₄ uptake by rainforest soils in the region of the ‘Wet Tropics’, Queensland, Australia, we linked CH₄ uptake and production algorithms to a regional GIS database. We estimated that the lowland and montane rainforest soils in northeast Queensland, Australia, were a net sink for CH₄ with a mean uptake rate of ?2.89 kg CH₄ ha^?1 year^?1 during July 1996 to June 1997 period.     

Integrated effects of organic,inorganic and biological amendments on methane emission,soil quality and rice productivity in irrigated paddy ecosystem of Bangladesh: field study of two consecutive rice growing seasons

Aims

Effects of different soil amendments were investigated on methane (CH₄) emission, soil quality parameters and rice productivity in irrigated paddy field of Bangladesh.

Methods

The experiment was laid out in a randomized complete block design with five treatments and three replications. The experimental treatments were urea (220 kg ha^?1) + rice straw compost (2 t ha^?1) as a control, urea (170 kg ha^?1) + rice straw compost (2 t ha^?1) + silicate fertilizer, urea (170 kg ha^?1) + sesbania biomass (2 t ha^?1 ) + silicate fertilizer, urea (170 kg ha^?1) + azolla biomass (2 t ha^?1) + cyanobacterial mixture 15 kg ha^?1 silicate fertilizer, urea (170 kg ha^?1) + cattle manure compost (2 t ha^?1) + silicate fertilizer.

Results

The average of two growing seasons CH₄ flux 132 kg ha^?1 was recorded from the conventional urea (220 kg ha^?1) with rice straw compost incorporated field plot followed by 126.7 (4 % reduction), 130.7 (1.5 % reduction), 116 (12 % reduction) and 126 (5 % reduction) kg CH₄ flux ha^?1 respectively, with rice straw compost, sesbania biomass, azolla anabaena and cattle manure compost in combination urea and silicate fertilizer applied plots. Rice grain yield was increased by 15 % and 10 % over the control (4.95 Mg ha^?1) with silicate plus composted cattle manure and silicate plus azolla anabaena, respectively. Soil quality parameters such as soil organic carbon, total nitrogen, microbial biomass carbon, soil redox status and cations exchange capacity were improved with the added organic materials and azolla biofertilizer amendments with silicate slag and optimum urea application (170 kg ha^?1) in paddy field.

Conclusion

Integrated application of silicate fertilizer, well composted organic manures and azolla biofertilizer could be an effective strategy to minimize the use of conventional urea fertilizer, reducing CH₄ emissions, improving soil quality parameters and increasing rice productivity in subtropical countries like Bangladesh.