High abundance of small zoobenthos around biogenic structures in tidal sediments of the Wadden Sea

On the tidal flats of the island of Sylt (eastern part of the North Sea) the quantity of micro- and meiofauna associated with shoots of seagrass(Zostera noltii), with infaunal bivalves(Macoma balthica), and with tubes and burrows of polychaetes(Pygospio elegans, Pectinaria koreni, Nereis diversicolor, Nereis virens, Arenicola marina) was found to add up to 5 to 33 % of the overall abundance. These structures, taken together, account for 10 to 50 % of the faunal abundance on an average tidal flat at Sylt. The quantitative effect of biogenic structures at the sediment surface (casts and funnels) is small compared to that of tubes and burrows penetrating the anaerobic subsurface layer. In providing stable oxic microenvironments these elite structures frequently bring together more individuals than occur in the entire reducing sediment below surface. Faunal composition of irrigated dwellings of large infauna is different from that of the oxic surface sediment. The common denominator of all elite structures of the subsurface is an oxic halo. Burrows without such a halo are unattractive. There is no evidence that owners of burrows prey on their smaller inmates.     

Marenzelleria cf. viridis and the sulphide regime

To find out how the polychaete Marenzelleria cf. viridis could spread successfully into the habitat of the Darss-Zingst Bodden Chain, one important environmental factor for sediment dwelling animals was examined: hydrogen sulphide. To investigate the stress of this environmental factor, hydrogen sulphide was continuously examined in the pore water of the sediment and burrows of M. cf. viridis. Metabolic activity was recorded by direct and indirect calorimetry. Depending on water temperature, organic matter content of the sediment and salinity, the sulphide concentration in the pore water varied between 1.5 and 4.2 mmol l^-1 being high during summer and in winter when the sediment and overlying water was ice covered. In microcosm experiments water of M. cf. viridis-burrows showed variations in sulphide between 145 and 210 µmol l^-1 but pore water concentration was much higher (6.5 mmol l^-1). In the presence of oxygen animals exhibited an accelerated metabolic rate which was met by a fully aerobic metabolism at Po₂ of 20 to 7.5 kPa and sulphide concentration of 215–245 µmol l^-1. When oxygen is absent the heat production was only slightly elevated (103%) when compared to the anoxic control. The elevated heat production of the animals during sulphide exposure and oxygen may be due to detoxification processes. In this case thiosulphate is formed probably via mitochondrial oxidation and therefore may account for additional ATP-gain.     

Imaging Oxygen Distribution in Marine Sediments. The Importance of Bioturbation and Sediment Heterogeneity

The influence of sediment oxygen heterogeneity, due to bioturbation, on diffusive oxygen flux was investigated. Laboratory experiments were carried out with 3 macrobenthic species presenting different bioturbation behaviour patterns: the polychaetes Nereis diversicolor and Nereis virens, both constructing ventilated galleries in the sediment column, and the gastropod Cyclope neritea, a burrowing species which does not build any structure. Oxygen two-dimensional distribution in sediments was quantified by means of the optical planar optode technique. Diffusive oxygen fluxes (mean and integrated) and a variability index were calculated on the captured oxygen images. All species increased sediment oxygen heterogeneity compared to the controls without animals. This was particularly noticeable with the polychaetes because of the construction of more or less complex burrows. Integrated diffusive oxygen flux increased with oxygen heterogeneity due to the production of interface available for solute exchanges between overlying water and sediments. This work shows that sediment heterogeneity is an important feature of the control of oxygen exchanges at the sediment-water interface.     

Production by Hexagenia limbata in a warm-water reservoir and its association with chlorophyll content of the water column

We investigated the productivity of nymphs of the mayfly Hexagenia limbata in Lake Waco, a central Texas reservoir, and assessed its association with chlorophyll content of the water. We hypothesized that food availability measured as chlorophyll content of the water may directly associate with growth of Hexagenia and predict population productivity. To test this, we compared production by mayfly populations at two stations in the same reservoir; a northern station receiving water input with high chlorophyll content, and a southern station receiving water with low chlorophyll content. Both stations had similar substrate type and abundant mayflies. Benthic samples were collected from October 1984 through September 1985, and dissolved oxygen and temperature of the water were monitored.Annual production (size-frequency method) was 1270 mg m^–2 (P/B = 7.5) at the northern station and 1990 mg m^–2 (P/B = 6.1) at the southern station. The mean standing crop was 323 mg m ^{– 2} at the southern station and 169mg m^–2 at the southern station. Densities of mayflies at the two stations were not significantly different.Mean chlorophyll concentration (total mg pigment) during the sampling period was 23.5 mg m^–3 at the northern station and 16.7 mg m ^{– 3} at the southern station. Therefore, the station with lower mean chlorophyll content had higher secondary productivity by Hexagenia. Conversely, the station with higher mean chlorophyll content had lower mayfly productivity. The productivity of the mayfly populations did not positively associate with the chlorophyll content of the water, and chlorophyll content did not predict the success of the population of Hexagenia. Variation in mayfly growth success was associated with differences in temperature and dissolved oxygen. The northern station with higher chlorophyll content and lower productivity had low dissolved oxygen and temperatures higher than optimum for growth.     

Scoyenia burrows from Ordovician palaeosols of the Juniata Formation in Pennsylvania

Scoyenia beerboweri is a new ichnospecies of burrow from the late Ordovician (Ashgill) Juniata Formation in central Pennsylvania, USA. The burrows are abundant in red calcareous palaeosols, and were created by animals living at the time of soil formation, because they are filled with red sediment like that of the palaeosol matrix, and both cut across, and are cut by, nodules of pedogenic carbonate. The isotopically light carbon and oxygen of carbonate in the palaeosols indicate a terrestrial ecosystem of well-drained floodplains in a tropical seasonally-dry semi-arid palaeoclimate. Backfill layering within the burrows is evidence of a bilaterally symmetrical animal. Size distribution of the burrows reveals discontinuous growth, as found in arthropods. Ferruginized faecal pellets in the burrows indicate that they ingested sediment. For these reasons the burrows of Scoyenia beerboweri are most likely to be the work of millipedes. The nature of vegetation supporting them is unknown, although a single problematic plant-like fossil cast was found, and liverwort spores are widespread in rocks of this age. Vegetative biomass was limited judging from the degree of chemical weathering, extent of burial gleization and isotopic composition of carbon in the palaeosols. These distinctive respiration-dominated liverwort-millipede polsterlands lived at a time of global greenhouse climate, following Precambrian–Cambrian lichen-algal microbial earths and supplanted by Silurian brakelands of early vascular land plants.     

Microscale oxygen distribution in various invertebrate burrow walls

Profiles of dissolved oxygen were measured in pore waters of unburrowed sediment and the burrow walls of seven invertebrate dwellings. Burrows studied include those of Corophium volutator, Heteromastus filiformis, Arenicola marina, Saccoglossus bromophenolosus, Clymenella sp., Hemigrapsus oregonensis and Cirriformia luxuriosa all from mudflats in Willapa Bay, Washington. These animals comprise a range of burrow architectures ranging from simple, unlined burrows to more complex, mucous lined burrows. Oxygen penetrated unburrowed sediment between depths of 0.4–2.6 mm, whereas oxygen penetrated the burrow walls from 0.3 mm to 2.3 mm. Three groups of burrows are recognized based on the oxygen diffusive properties relative to the unburrowed sediment including those that: (1) slightly impeded oxygen penetration, (2) clearly inhibited oxygen penetration, and (3) enhanced oxygen penetration. Differences in the diffusive properties of the burrow wall are related to the burrow microstructure and presumably the microbial communities living within the burrow microenvironment. The results of this study suggest that burrow shape and burrow‐wall architecture may play an important role in controlling the diffusion of oxygen, and possibly of other dissolved gases (i.e. CO₂, H₂S). The results further demonstrate that simplified assumptions (i.e. that bioturbation uniformly enhances oxygen diffusion into suboxic and anoxic sediments), while requisite for numerical modelling, are not necessarily representative of field data.     

Novel use of burrow casting as a research tool in deep-sea ecology

Although the deep sea is the largest ecosystem on Earth, its infaunal ecology remains poorly understood because of the logistical challenges. Here we report the morphology of relatively large burrows obtained by in situ burrow casting at a hydrocarbon-seep site and a non-seep site at water depths of 1173 and 1455 m, respectively. Deep and complex burrows are abundant at both sites, indicating that the burrows introduce oxygen-rich sea water into the deep reducing substrate, thereby influencing benthic metabolism and nutrient fluxes, and providing an oxic microhabitat for small organisms. Burrow castings reveal that the solemyid bivalve Acharax johnsoni mines sulphide from the sediment, as documented for related shallow-water species. To our knowledge, this is the first study to examine in situ burrow morphology in the deep sea by means of burrow casting, providing detailed information on burrow structure which will aid the interpretation of seabed processes in the deep sea.     

Mayfly Burrows in Firmground of Recent Rivers from the Czech Republic and Poland,with Some Comments on Ephemeropteran Burrows in General

U-shaped, pouch-like burrows with parallel limbs, covered with short scratches arranged in sets, occur in the thalweg of the Oh?e river in NW Czech Republic. Similar, but smaller burrows with rare scratches, not arranged in sets, occur in the thalweg of the Drw?ca river in N Poland. Probably, they are produced by larvae and/or nymphs of Palingenia and Polymitarcis (Ephoron), respectively. In both localities, they burrowed in firmground surfaces at shallow depths. The burrowed surfaces were emerged during low water levels. A review of recent mayfly burrows shows that they are 1) U-shaped pouches with parallel limbs and septum, which may be covered with short scratches and are oriented perpendicular to the bottom, irrespective of its inclination, or 2) wide U-shape burrows with divergent limbs, which may be branched. In the fossil record, the ichnogenera Fuersichnus, Asthenopodichnium, and Rhizocorallium are partly ascribed to mayfly burrows, but their comparison to the recent burrows shows that such interpretations are somewhat problematic. The mayfly burrows are potentially good indicators of aquatic, non-marine, well oxygenated, clean water environments.     

The impact of sediment reworking by opportunistic chironomids on specialised mayflies

1. Bioturbation, by definition, changes the structure and properties of sediments, thereby altering the environment of the bioturbator and other benthic species. In addition to the indirect effects of sediment reworking (e.g. changes in water quality), bioturbating species may also directly interfere with other species via competition. This study aims, therefore, to examine both the direct and indirect effects of sediment reworking by an opportunistic detritivore on survival and growth of a specialised mayfly species. 2. Bioturbation was imposed by adding different densities of the midge Chironomus riparius to clean and polluted sediments. Changes in water quality and sediment properties, and survival and growth of the mayfly Ephoron virgo were assessed. 3. Chironomid density had a strong negative effect on the concentrations of metals, nutrients and particles in the overlying water, but increased the penetration of oxygen into the sediment. Survival and growth of E. virgo were strongly reduced in the presence of chironomids. In the polluted sediment, the activity of chironomids enhanced the negative effects of pollution on E. virgo. In the clean sediment, inhibition of the mayfly was even more pronounced. 4. This suggests that direct disturbance by C. riparius was more important than indirect changes in water quality, and over‐ruled the potential positive effects of improved oxygen penetration. The results indicated that the distribution of small insects, such as E. virgo, can be limited by bioturbating benthic invertebrates.     

The role of <Emphasis Type="Italic">Campsurus notatus</Emphasis> (Ephemeroptera: Polymitarcytidae) bioturbation and sediment quality on potential gas fluxes in a tropical lake

About 30% of the total area of Lake Batata (Amazon) was impacted by the disposal of bauxite tailings originated from the process of washing bauxite. This effluent, composed by fine particles of clay and water, settled on top of the natural sediment, originating a new substratum with a different physical and chemical composition. This phenomenon created a new distinct habitat (impacted sediment) influencing the benthic community. The aim of this study was to evaluate the impact of bioturbation by Campsurus notatus (Ephemeroptera: Polymitarcytidae) on potential gas fluxes in the sediment of natural and impacted areas of the lake. The natural sediment had a significantly higher methane concentration when compared to the impacted one. In incubated sediment cores, the presence of C. notatus nymphs resulted in a significant increase in oxygen consumption and methane and carbon dioxide release to the water column. The effect of the presence of nymphs on methane was ambiguous. The C. notatus nymphs strongly decreased methane concentration in natural sediment samples, probably because of the enhancement of the oxic sediment area. However, this effect was not observed in impacted samples. Finally, the new substratum of Lake Batata decreased methane concentration in sediment and water column. C. notatus nymphs demonstrated to have a significant role on gas flux (methane and CO₂) from sediment to water column as well as on oxygen consumption in Lake Batata, consequently influencing the carbon cycle in this lake. Handling editor: S. M. Thomaz     

Bioturbation: impact on the marine nitrogen cycle

Sediments play a key role in the marine nitrogen cycle and can act either as a source or a sink of biologically available (fixed) nitrogen. This cycling is driven by a number of microbial remineralization reactions, many of which occur across the oxic/anoxic interface near the sediment surface. The presence and activity of large burrowing macrofauna (bioturbators) in the sediment can significantly affect these microbial processes by altering the physicochemical properties of the sediment. For example, the building and irrigation of burrows by bioturbators introduces fresh oxygenated water into deeper sediment layers and allows the exchange of solutes between the sediment and water column. Burrows can effectively extend the oxic/anoxic interface into deeper sediment layers, thus providing a unique environment for nitrogen-cycling microbial communities. Recent studies have shown that the abundance and diversity of micro-organisms can be far greater in burrow wall sediment than in the surrounding surface or subsurface sediment; meanwhile, bioturbated sediment supports higher rates of coupled nitrification-denitrification reactions and increased fluxes of ammonium to the water column. In the present paper we discuss the potential for bioturbation to significantly affect marine nitrogen cycling, as well as the molecular techniques used to study microbial nitrogen cycling communities and directions for future study.     

Bacterial--Invertebrate Interactions in Uptake of Dissolved Organic Matter

SYNOPSIS. AS compared to integumentary uptake systems of soft-bodiedmarine invertebrates, bacterial systems, in terms of transportconstants, are much better adapted to the low concentrationsof dissolved organic nutrients encountered in coastal and offshorewaters. Bacteria respond to the presence of suitable dissolvedorganic substrates with induction, uptake and multiplication,maintaining the concentrations of dissolved organic matter (DOM)permanently low. At realistic in situ concentrations, epidermaluptake by pelagic and epibenthic animals proceeds at such lowrates that scarcely a substantial proportion of their metabolicneeds is provided by absorption. In marine sediments, wherethe life processes of bacteria and animals are closely interrelated,the macrofauna is sheltered by shells, firm tubes and burrows,which are irrigated by means of overlying water of the watercolumn. Hence, interstitial water with its sometimes higherconcentrations of DOM is scarcely available to sediment-dwellinglarger metazoans. The meiofauna mainly inhabits the few millimetersof the upper sediment layers and the thin halos surroundingirrigated macrofaunal burrows, where sufficient oxygen is available.Unless the magnitude of horizontal water movement, the amountsof diffusional nutrient supply and the percentages, by whichnutrient concentrations are reduced by meiofaunal uptake, areknown, estimations of nutritional benefits from uptake of DOMby meiofauna cannot be made. For all infaunal taxa, bacteriaappear to represent a major food supply.     

Ecophysiological Evidence that Achromatium oxaliferum Is Responsible for the Oxidation of Reduced Sulfur Species to Sulfate in a Freshwater Sediment

Achromatium oxaliferum is a large, morphologically conspicuous, sediment-dwelling bacterium. The organism has yet to be cultured in the laboratory, and very little is known about its physiology. The presence of intracellular inclusions of calcite and sulfur have given rise to speculation that the bacterium is involved in the carbon and sulfur cycles in the sediments where it is found. Depth profiles of oxygen concentration and A. oxaliferum cell numbers in a freshwater sediment revealed that the A. oxaliferum population spanned the oxic-anoxic boundary in the top 3 to 4 cm of sediments. Some of the A. oxaliferum cells resided at depths where no oxygen was detectable, suggesting that these cells may be capable of anaerobic metabolism. The distributions of solid-phase and dissolved inorganic sulfur species in the sediment revealed that A. oxaliferum was most abundant where sulfur cycling was most intense. The sediment was characterized by low concentrations of free sulfide. However, a comparison of sulfate reduction rates in sediment cores incubated with either oxic or anoxic overlying water indicated that the oxidative and reductive components of the sulfur cycle were tightly coupled in the A. oxaliferum-bearing sediment. A positive correlation between pore water sulfate concentration and A. oxaliferum numbers was observed in field data collected over an 18-month period, suggesting a possible link between A. oxaliferum numbers and the oxidation of reduced sulfur species to sulfate. The field data were supported by laboratory incubation experiments in which sodium molybdate-treated sediment cores were augmented with highly purified suspensions of A. oxaliferum cells. Under oxic conditions, rates of sulfate production in the presence of sodium molybdate were found to correlate strongly with the number of cells added to sediment cores, providing further evidence for a role for A. oxaliferum in the oxidation of reduced sulfur.     

The impact of polychaete (Nereis virens Sars) burrows on nitrification and nitrate reduction in estuarine sediments

The influence of Nereis virens Sars burrows on nitrification, denitrification and total nitrate reduction was assessed in poor (0.7% organic matter) and rich (2.0% organic matter) sediment from the estuary, Norsminde Fjord. The experiments were performed as assays of potential activity, since natural conditions proved impossible to simulate in the unpredictable burrow environment. The measurements were made in two microprofiles, extending 15 mm into the sediment from the surface and from the burrow wall lining. Both sediment types showed higher potential nitrification in the wall linings than in the surface sediment. This was positively correlated with the content of silt + clay particles and organic matter (i.e. the mucous lining of burrow walls). An elevated nitrate reduction activity was evident in the oxic layer of surface sediment. No such activity pattern was observed in the burrow walls. Denitrification accounted for 27–53 % of the total nitrate reduction. An empirical relationship between the ratio of predicted oxygen penetration into surface and wall sediment and the contribution of nereid burrows to bulk actual nitrification and nitrate reduction is presented. The burrow contribution to bulk nitrification was, in contrast to bulk nitrate reduction, very sensitive to variable oxygen penetrations. Thus, possible short-time changes in nitrate exchange across the wall lining will apparently be regulated by changes in nitrification activity rather than nitrate reduction activity.     

The effects of temperature and salinity on ventilation behavior of two species of ghost shrimp (Thalassinidea) from the northern Gulf of Mexico: a laboratory study

Thalassinidean shrimp are among the most important bioturbators in coastal ecosystems. The species Lepidophthalmus louisianensis and Callichirus islagrande are found in dense aggregations (up to 400 burrows m⁻²) along sandy and muddy shores of the northern Gulf of Mexico. These shrimp actively ventilate their burrows to provide oxygen and eliminate wastes. In doing so, they expel nutrient-rich burrow water to the overlying water column, potentially altering nutrient cycling and benthic primary productivity. To develop a mechanistic understanding of the role of burrowing shrimp in nutrient processes, we must first examine how changes in environmental conditions alter the frequency, strength, and duration of ventilation. Field measurements of burrow temperature and salinity suggest that the burrow serves as a buffer from the highly variable conditions found in these estuarine, intertidal habitats. Temperatures at sediment depths >30 cm were generally warmer in winter and cooler in summer than at the sediment surface. Burrow salinities, measured at low tide, were consistently higher than adjacent open water. We used these measurements to parameterize laboratory studies of burrow ventilation in artificial burrows made of plastic tubing and in more natural sediment mesocosms, and studies of oxygen consumption in small glass containers. Rates of oxygen consumption and burrow ventilation by L. louisianensis were lower than those of C. islagrande, perhaps reflecting a lower overall activity rate in the former species which resides in less permeable sediments. Generally, increased temperature had a significant positive effect on oxygen consumption for both species. Salinity had no effect on oxygen consumption by L. louisianensis, reflecting the ability of this species to exist in a wide range of salinities. In contrast, oxygen consumption rates of C. islagrande, which is less tolerant of low salinity, were significantly higher at 35‰ than at 20‰. Ventilation rates were highly variable, and shrimp in artificial burrows tended to have consistently higher ventilation rates than those in sediment mesocosms. There is a trend toward more frequent ventilation at 30 °C for both species. Salinity had no effect on ventilation for either species. Our results suggest that thalassinideans exhibit highly variable and species-specific ventilation patterns that are more likely to be affected by temperature than salinity. Increased ventilation at higher temperatures seems to coincide with increased oxygen consumption at these temperatures, although a similar finding was not made for salinity treatments.     

Effects of hypoxia on animal burrow construction and consequent effects on sediment redox profiles

We conducted a laboratory experiment to investigate the effects of mild hypoxia on the burrowing behavior of three marine species (the hard clam Mercenaria mercenaria, the polychaete worm Neanthes virens, and the amphipod Leptocheirus plumulosus) and consequent effects on sediment redox profiles. Animals were introduced into defaunated sediment and allowed to burrow for four months at mildly hypoxic (2 mg l^− 1) and normoxic (7 mg l^− 1) dissolved oxygen (DO) levels. Sediment redox profiles were measured 10 times during the course of the experiment. At the end of the experiment, the sediment was imaged using computer-aided tomography to quantify burrow volume and location. For the three species, burrow volume remained constant over DO treatments, but amphipod and clam burrows were shallower in hypoxic treatments compared with normoxic treatments. Redox profile discontinuity (RPD) depth was shallower in hypoxic treatments compared with normoxic treatments for experiments without animals, indicating that water column oxygen concentration alone influences diffusion of oxygen into the sediment. Worms, but neither clams nor amphipods, increased the RPD depth relative to no-animal controls in both hypoxic and normoxic treatments, but the effect was greater in normoxic conditions. These results suggest that although hypoxia can reduce burrowing depth, infauna can still increase the depth to which oxygen penetrates the sediment, but not to the same degree as they would under normoxic conditions.     

The relationship between Chironomus plumosus burrows and the spatial distribution of pore-water phosphate, iron and ammonium in lake sediments

1. To study the influence of chironomids on the distribution of pore‐water concentrations of phosphate, iron and ammonium, we conducted a laboratory experiment using mesocosms equipped with two‐dimensional pore‐water samplers, filled with lake sediment and populated with different densities of Chironomus plumosus. 2. Specially designed mesocosms were used in the study. A 6‐mm deep space between the front plate and the pore‐water sampler at the back plate was just thick enough to allow the chironomids to live undisturbed, yet thin enough to force all the burrows into a two‐dimensional plane. 3. The courses of the burrows were observed during the experiment as oxidised zones surrounding them, as well as being identified with an X‐ray image taken at the end of the experiment. 4. We investigated the relationship between C. plumosus burrows and spatial patterns of pore‐water composition. Concentrations of the three ions were significantly less around ventilated burrows (54% to 24%), as bioirrigation caused a convective exchange of pore‐water enriched with dissolved species compared with the overlying water, and also because oxygen imported into the sediment resulting in nitrification of ammonium, oxidation of iron(II) and a co‐precipitation of phosphate with Fe(III) oxyhydroxides. 5. In mesocosms with chironomids, new (redox) interfaces occurred with diffusive pore‐water gradients perpendicular to the course of burrows and the site of major phosphate, ammonium and iron(II) release shifted from the sediment surface to the burrow walls.     

A review of the biology, ecology and potential use of the common ragworm Hediste diversicolor (O.F. Müller) (Annelida: Polychaeta)

The common ragworm Hediste diversicolor inhabits the shallow marine and brackish waters in the North Temperate Zone of the Atlantic. This infaunal species builds U or Y-shaped burrows in the soft sediments. H. diversicolor is gonochoristic and remains atokous throughout its life. Due to the facility of harvesting of individuals by hand and their maintenance, this species represents a good biological material for experimental studies. In consequence, the common ragworm served as a model for endocrine control of reproduction in Polychaeta and played a fundamental role in the study of immune defence in Polychaeta.Life history characteristics (longevity, spawning season, feeding tactics and growth) and population dynamics (sex ratio, density and biomass) vary greatly according to geographical location of the populations. In addition, inter-population morphological, biochemical and physiological differences have been noticed in individuals from different areas and different environmental conditions in the same areas and could be related to the limited dispersal capacity of the species. H. diversicolor interacts with its environment. The construction of burrows by individuals increases the sediment–water interface. When they ventilate their burrows, individuals verticalize oxic zones into the sediment and promote microbial and meiofaunal growth alongside their burrows. Moreover, the common ragworm is a species of commercial interest because of its use as bait in recreational fishing and as food in aquaculture. In order to alleviate environmental pressure caused by excessive demand over optimal sustainable yield of bait fisheries, intensive aquaculture has been proposed. The common ragworm could be also used as biomonitor of pollution in estuarine ecosystems.     

Silica and diatom growth in Lough Neagh: the importance of internal recycling

1. Lough Neagh is a large eutrophic lake with a high dissolved silica (SiO2) concentration arising from the basaltic rock in parts of the catchment and the normal winter maximum concentration is over 8 mg L−1. Based on frequent observations between 1974 and 1997, the annual cycles of SiO2 input, uptake and release are explored.
2. Large spring blooms of the planktonic diatoms Aulacoseira subarctica Haworth and Stephanodiscus astraea occur every year and are terminated by SiO2 depletion. Although there are periods when one diatom species has dominated the other, over the period as a whole, the two diatoms appear to be in a stable coexistence.
3. A model of the effect of river inputs on lake concentration shows that without SiO2 release from the sediment, the maximum spring dissolved SiO2 concentration (and hence diatom crop) would be only about one-third of that actually observed.
4. It is concluded that within-lake processes play a large role and are potentially more variable than catchment processes in determining the available SiO2 in Lough Neagh.
5. The role of benthic animals, especially Chironomus anthracinus, in the sediment SiO2 release process is discussed. Field data suggest the SiO2 release rate is highly sensitive to temperature, but this could be partly caused by an interaction between temperature and animal activity.     

Bioturbation and the role of microniches for sulfate reduction in coastal marine sediments

The effects of bioturbation in marine sediments are mainly associated with an increase in oxic and oxidized zones through an influx of oxygen‐rich water deeper into the sediment and the rapid transport of particles between oxic and anoxic conditions. However, macrofaunal activity also can increase the occurrence of reduced microniches and anaerobic processes, such as sulfate reduction. Our goal was to determine the two‐dimensional distribution of microniches associated with burrows of a ghost shrimp (Neotrypaea californiensis) and to determine microbial activities. In laboratory experiments, detailed measurements of sulfate reduction rates (SRR) were measured by injecting, in a 1 cm grid, radiolabelled sulfate directly into a narrow aquarium (40 cm × 30 cm × 3 cm) containing the complex burrow of an actively burrowing shrimp. Light‐coloured oxidized burrow walls, along with black reduced microniches, were clearly visible through the aquarium walls. Direct injection of radiotracers allowed for whole‐aquarium incubation to obtain two‐dimensional documentation of sulfate reduction. Results indicated SRR were up to three orders of magnitude higher (140–790 nmol SO₄^2? cm^?3 day^?1) in reduced microniches associated with burrows when compared with the surrounding sediment. Additionally, some of the subsurface sulfate‐reducing microniches associated with the burrow system appeared to be zones of dinitrogen fixation. Bioturbation may also lead to decreased sulfate reduction in other microniches and the sum of the activity in all microniches might not result in a total increase of sulfate reduction compared with non‐bioturbated control sediments.