Calcium binding by horseradish peroxidase C and the heme environmental structure

The hyperfine shifted proton NMR spectrum of isoenzyme c of horseradish peroxidase indicated that one calcium ion is essential to the enzyme in maintaining the protein structure in the heme vicinity.     

3-(p-hydroxyphenyl)propionic acid as a new fluorogenic reagent for amine oxidase assays

A detailed procedure of a new and extremely sensitive fluorometric assay for amine oxidases is presented. Hydrogen peroxide, produced by the oxidase reaction, reacted with 3-(p-hydroxyphenyl)propionic acid in the presence of peroxidase to yield a fluorescent compound by which enzyme activity could be determined. The enzyme reaction was terminated by NaOH solution, which increased the fluorescence intensity three- to fivefold. The detection limit thus obtained was as little as 0.02 nmol. The alkalinization also contributed to stopping the enzyme reaction and to the clarification of assay mixtures containing turbid enzyme preparations.     

Structural studies on a polysaccharide obtained from the cambium layer of a bael (Aegle marmelos) tree

The purified polysaccharide isolated from the cambium layer of a young bael (Aegle marmelos) tree contains galactose, arabinose, rhamnose, xylose, and glucose in the molar ratios of 10.0:9.8:1.4:1.9:1. Methylation analysis and Smith degradation studies established the linkages of the different monosaccharide residues. The anomeric configurations of the various sugar units were determined by oxidation of the acetylated polysaccharide with chromium(VI) trioxide. The oligosaccharides isolated from the polysaccharide by graded hydrolysis were characterized. The structural significance of these results is discussed.     

An inhibitory high affinity binding site for ADP in the oligomycin-sensitive ATPase of beef heart submitochondrial particles.

Kinetic evidence are presented for the existence of a high affinity inhibitory site for ADP /K_i < 10^?7 M/ in the oligomycin-sensitive ATPase of beef heart submitochondrial particles. The ATPase·ADP complex is completely inactive in the ATPase reaction; it can be converted into active ATPase in a slow ATP-dependent reaction. The dependence of a first order rate constant for activation of the enzyme·ADP complex on concentration of ATP gives a K_m value equal to that for ATP in the ATPase reaction. The data obtained suggest that the membrane-bound ATPase complex contains two kinetically distinct nucleotide-binding centers, i.e. center 1 binds ATP or ADP with a formation of enzyme-substrate or enzyme-competitive inhibitor complexes: center 2 binds ADP with a formation of a complex which is able to bind ATP in center 1 and unable to hydrolyze the bound ATP. The binding of ATP or ADP in center 1 changes the reactivity of center 2 towards ADP.     

A fluorometric-HPLC assay for quantitating the binding of benzo[a]pyrene metabolites to DNA

A nonradiometric method is presented for quantitating low levels of benzo[a]pyrene (BP) derivatives that are covalently bound to the DNA of BP-treated mice. This method consists of hydrolyzing the DNA with acid to liberate the BP-adducts in the form of the isomeric tetrols of BP. These tetrols have fluorescence quantum yields of ～0.7 in deoxygenated solution at 298 K. Hence they are easily quantitated, following HPLC separation, by means of fluorescence detection. The sensitivity of the method is such that one bound BP residue per 10⁷ bases can be detected in 100 μg of DNA.     

Temperature-jump studies of Desulfovibrio vulgaris flavodoxin: Kinetics of FMN binding and of reduction of semiquinone by methyl viologen

Temperature-jump relaxation spectrometry has been used with the flavodoxin from Desulfovibrio vulgaris to investigate the kinetics of FMN binding to apoprotein and of reduction of half-reduced to fully-reduced protein by methyl viologen. FMN binding was characterized by a single, concentration dependent, exponential relaxation which corresponded to a diminution of flavin fluorescence intensity. This implies the absence of detectable intermediates during coenzyme binding and a positive enthalpy of binding. The latter was confirmed by microcalorimetry and fluorometric titration studies at two temperatures. The reduction of the half-reduced holoprotein also displayed simple exponential kinetics, again implying the absence of intermediates. The results of these studies are compared with earlier work with other flavodoxins.     

The synthesis of 4-methylumbelliferyl alpha-ketoside of N-acetylneuraminic acid and its use in a fluorometric assay for neuraminidase

4-Methylumbelliferyl α-ketoside of N-acetylneuraminic acid was synthesized by reacting the sodium salt of 4-methylumbelliferone with the 2-chloro-2-deoxy derivative of peracetylated methyl N-acetylneuraminate, followed by preparative silica gel chromatography, deblocking, and purification by gel filtration on Sephadex G-25. The final product was isolated as either the sodium or ammonium salt, and its suitability as a substrate for neuraminidase was evaluated. The optimal pH values for various neuraminidases were 5.6 in acetate buffer (Arthrobacter ureafaciens), 5.0–5.1 in acetate buffer (Clostridium perfringens), and 4.4 in phosphate-citrate buffer (human fibroblasts). K_m values for these enzymes at the optimal pH were 6 × 10^?4m (Arthrobacter), 1 × 10^?4m (Clostridium), and 3 × 10^?4m (human fibroblasts).     

Identification of a glycine transporter from pea leaf mitochondria

Mitochondria isolated from pea leaves possess a glycine transporter that is capable of moving glycine from the cytosol into the matrix, the site of glycine decar?ylase. The carrier was inhibited by mersalyl, p-chloromercuribenzoate, and the glycine analogues, glycine hydroxamate and aminoacetonitrile. Glycine uptake was dependent on the transmembrane pH gradient and was inhibited by uncouplers and electron transport inhibitors. Glycine transport was not, however, inhibited by the glycine decar?ylase inhibitor, arsenite. This transporter is responsible for the movement of glycine into the mitochondria and provides an important step in photorespiration.     

An improved preparation of 3-deoxy-d-erythro-hexos-2-ulose via the bis(benzoylhydrazone) and some related constitutional studies

Sugar osazones and glycosuloses rapidly and quantitatively react with hydroxylamine to produce oximes that give trimethylsilyl derivatives suitable for g.l.c. and mass spectral analysis. The reaction of d-glucose with benzoylhydrazine to give the bishydrazone of 3-deoxy-d-erythro-hexos-2-ulose (1) [H. El Khadem et al., Carbohydr. Res., 22 (1973) 381-89] was re-investigated, together with the conversion of this compound to the hexosulose. Although by-products are produced in the reaction, including the bis(benzoylhydrazone) (osazone) of d-glucose, the major product is the monohydrate of the bis(benzoylhydrazone) of 1 (colorless). The anhydrous (yellow) form can be prepared from the monohydrate by crystallization from absolute ethanol and has quite different physical properties. Improvements of the original preparation are described that allow the preparation of the bishydrazone and its subsequent conversion to 1via transhydrazonation in 44% overall yield, and with no detectable contamination by d-glucose or d-glucosone. Evidence is presented that the previously reported cyclic form of the bis(benzoylhydrazone) of d-glucose is the bis(benzoylhydrazone) (monohydrate) of 1.     

Anticytokinin activity of 4-furfurylamino-7-(beta-D-ribofuranosyl)pyrrolo(2,3)pyrimidine

4-Furfurylamino-7-(β-D-ribofuranosyl)pyrrolo[2,3-d]-pyrimidine, the 7-deaza analog of kinetin riboside, has been synthesized and found to be a potent anticytokinin in the tabacco callus bioassay.     

Protein-ligand binding studies with a table-top,air-driven,high-speed centrifuge

Procedures developed earlier for the ultracentrifuge in order to study the binding of low molecular weight ligands to proteins have been adapted for use with a relatively inexpensive, table-top, air-driven centrifuge known as the Airfuge. This instrument, which holds six plastic tubes with a total capacity of 1 ml, generates such high centrifugal fields (up to 160,000 times that of gravity) that proteins are readily sedimented to the bottom of the tubes, leaving unbound ligand in the supernatant. Hence, direct sampling and analysis of the solution at the conclusion of the centrifuge experiment and knowledge of the total concentration of ligand permit a quantitative determination of the amount of ligand bound to the protein. The method depends on the use of dextran in the solution in order to provide density stabilization and prevent serious convective stirring of the contents of the tubes during the deceleration of the rotor. Two systems were studied as a test of the technique and it was found that the centrifuge method yields results comparable to those obtained by equilibrium dialysis. With aspartate transcarbamoylase and CTP, conditions were obtained (100,000 rpm for 30 min) such that the enzyme and enzyme-CTP complexes were sedimented rapidly to the bottom of the tubes, leaving free CTP distributed throughout the solution. In contrast to this sedimentation velocity experiment, studies were also made with RNase and 5′-AMP. The procedure for this system involves sedimentation equilibrium and the protein, although not completely removed from the top of the solution, is distributed predominantly at the bottom of the tubes as unbound ligand remains in the supernatant. For such systems, it is possible to estimate theoretically the effects of the size of the ligand and it is shown that re-equilibration causes only minor complications for ligands of molecular weight less than 1000. The method is simple, uses only small amounts of proteins and ligands, requires only short times for proteins of molecular weight about 10⁵, and shows promise of providing binding data with an accuracy comparable to other techniques.     

Evidence for sequence preferences in the intercalative binding of ethidium bromide to dinucleoside monophosphates.

The rate of production of tandem duplications in phage λ has been measured in the presence and absence of known recombination systems. Two deletion phages have been used: tdel33, a deletion derivative of a φ80-λ hybrid phage, and λb221, which carries a large deletion of the central portion of the λ chromosome. Both phages are int⁻, and tdel33 is also red⁻, by virtue of their deletions. Stocks of these phages can be prepared free of long tandem duplication derivatives by CsCl density gradient purification. After a single cycle of lytic growth, lysates from these purified phage stocks contain tandem duplications at a frequency of 10⁻³ in the case of tdel33 and 10⁻⁵ in the case of λb221. These frequencies are unaffected by the presence of mutations in the host Rec system or the phage Red system. To investigate the difference in duplication frequency between tdel33 and λb221, the phages were grown in mixed infection. The result indicates that a trans-active product of tdel33 is responsible for its high frequency of duplication production.Tandem duplications have been detected by banding the phage lysates in CsCl density gradients. Long DNA addition mutants can be detected in this way if they arise with a frequency of at least 10⁻⁵ and if the duplication length is at least 0.14 λ lengths. To accomplish this it is necessary to distinguish them from contaminating parental phage and from dense phages with aberrant structures which arise at roughly comparable frequencies. The former can be done by rebanding and the latter by growth and rebanding. To distinguish these types we have also made use of a new mutant of Escherichia coli which does not plate λ deletion phages. All of the DNA addition mutants we have detected in this way are tandem duplications; evidently mutants with long insertions arise more rarely.     

An hydroxylapatite batch assay for the quantitation of 1alpha,25-dihydroxyvitamin D3-receptor complexes.

A versatile hydroxylapatite batch assay for 1α,25-dihydroxyvitamin D₃-receptor complex from chick intestinal mucosa has been developed. The assay has been characterized with respect to time and temperature of incubations, protein concentration, amount of hydroxylapatite required to bind receptor-steroid complexes, pH, and effects of KCl and phosphate. Triton X-100 (0,5%, $\text{v}\text{v}$) was found to be essential for the removal of nonspecifically bound ligand. The hydroxylapatite was shown to bind the 1α,25-dihydroxy-vitamin D₃ receptor as demonstrated by the specificity and high affinity for 1α,25-dihydroxy-vitamin D₃ and the sedimentation properties of the phosphate-extracted hydroxylapatite-bound complex on sucrose density gradients. Binding appears to be nearly quantitative. The efficient separation of bound from free ligand utilizing this assay makes it possible to examine a number of aspects of the binding of this steroid hormone to its cytoplasmic receptor that has not previously been possible.     

Automated fluorometric analysis of DNA, protein, and enzyme activities: application to methods in cell culture

Automated fluorometric methods for the analysis of DNA, protein, and selected enzyme activities for N-acetyl-β-d-glucosaminidase, glucose 6-phosphate dehydrogenase, and 6-phosphogluconate dehydrogenase are described. Instrumentation for these assays includes a Gilford 3500 computer-directed analyzer in conjunction with a Farrand Ratio Fluorometer-2 modified for flowthrough sampling. Comparisons were made between the automated fluorometric methods described and manual spectrophotometric or fluorometric methods for reproducibility, speed of analysis, and quantitative correlation. Typical values of N-acetyl-β-d-glucosaminidase, glucose 6-phosphate dehydrogenase, and 6-phosphogluconate dehydrogenase activities obtained by these methods in isolated rat hepatocytes and Reuber H-35 hepatoma cells are reported.     

Conversion of a 2-(N-nitroso)acetamido hexose into a five-carbon, acetylenic sugar derivative

Dinitrogen tetraoxide was used to convert 2-acetamido-1,3,4,6-tetra-O-acetyl-2-deoxy-β-D-glucopyranose (1) in high yield into the syrupy N-nitroso derivative 2, and benzyl 2-acetamido-3,4,6-tri-O-acetyl-2-deoxy-β-D-glucopyranose (6) into the crystalline N-nitroso analog 7. The N-nitroso derivative 2 in acetonitrile underwent photolysis by pyrex-filtered, u.v. light to regenerate the starting acetamide 1 in high yield; spontaneous decomposition of 2 afforded β-D-glucopyranose pentaacetate (3) and other products. In ethereal solution, compound 2 reacted with potassium hydroxide in isopropyl alcohol with loss of the 2-substituent and C-1, to give a C₅ acetylene, 1,2-dideoxy-D-erythro-pent-1-ynitol, isolated in high yield as its triacetate 4 and characterized by conversion into the known, crystalline 1,2-dideoxy-3-O-(3,5- dinitrobenzoyl)-4,5-O-isopropylidene-D-erythro-pent-1-ynitol (5).     

Purification of 2,5-anhydro-d-hexitol bis(phosphates) and identification of a major 1,4,6-tris(phosphate) contaminant by 31P-, 13C-, and 1H-N.M.R. spectroscopy

The reaction of two equivalents of diphenylchlorophosphate in cold pyridine with 2,5-anhydrohexitols has been assumed to result in only 1,6-bis(diphenylphosphate) products. However, by thin-layer, silica gel dry-column, and DEAE-Sephadex A-25 column chromatography, the products of this reaction have been shown to contain three major components; monophosphates (32 or 30%, by weight), 1,6-bis(phosphates) (40 or 56%), and 1,4,6-tris(phosphates) (28 or 14%): the former percentages for the product from 2,5-anhydro-d-mannitol (1) and the latter for the product from 2,5-anhydro-d-glucitol (10). The identity of each bis- and tris-(phosphate) of 1 or 10 was established by ³¹P- and ¹³C-n.m.r. spectroscopy. Acetylated bis- and tris-(diphenylphosphates) of 1 were also examined by ¹H-n.m.r. The significance of these findings on the interpretation of studies of the anomeric specificity of enzymes and on the specificity of the reagent diphenylchlorophosphate are discussed. The formation of only a 1,4,6-tris(phosphate) of 10 suggests that the 1,6-bis(diphenylphosphate) of 10 may undergo formation of a 1,3-cyclic phosphate triester by transesterification with elimination of phenol. A method for the determination of the number of cyclohexylammonium groups crystallizing with a sugar phosphate is proposed that simplifies the elemental analysis of this type of salt.     

Multiple Smith-degradations of carcinoembryonic antigen (CEA) and of asialo CEA

Carcinoembryonic antigen (CEA) and asialo CEA were subjected to multiple Smith-degradation (i.e., for each degradation, application in sequence of periodate oxidation, borohydride reduction, and mild hydrolysis with acid; borohydride-t was substituted for unlabelled borohydride). High yields of modified glycoproteins were obtained at each stage. After three complete degradations and a further periodate-borohydride-t treatment, the carbohydrate content of CEA and of asialo CEA had decreased from 45–50% to 11–12% (i.e., 90% removal of carbohydrate). Glycerol was always one of the products obtained after each degradation, but threitol and erythritol were not detected. The second degradation caused a substantial loss of 2-acetamido-2-deoxyglucose, which is consistent with the location of some of this monosaccharide towards the terminal (non-reducing) end of the oligosaccharides. The “core” region of the oligosaccharides is composed of galactose, mannose, and 2-acetamido-2-deoxyglucose. After the fourth oxidation, 2-acetamido-2-deoxyglucose was 50–60% of the total content of residual carbohydrate. After the first degradation, there was a progressive loss in antigenic activity, but this was associated with a small amount of hydrolysis of the protein moiety of CEA.