Determining algal assemblages in oligotrophic lakes and streams: comparing information from newly developed pigment/chlorophyll a ratios with direct microscopy

1. Pigment analyses by high performance liquid chromatography (HPLC) are commonly used for determining algal groups in marine and estuarine areas but are underdeveloped in freshwaters. In this study, 15 characteristic pelagic algal species (representing five algal groups) of oligo‐ / mesotrophic lakes were cultured and pigment / Chl a ratios determined at three light intensities. 2. With the exception of cyanophytes, light treatment had little effect on pigment / Chl a ratios. This justifies the use of the same pigment / Chl a ratios during seasonal studies where light conditions may change. 3. The determined pigment / Chl a ratios were tested on seasonal samples from five oligo‐ / mesotrophic lakes and three streams using CHEMTAX software. Pigment ratios of both pelagic and benthic algal communities from the lakes and streams were analysed to determine whether the pelagic algae‐based ratios can be used for benthic algal communities. 4. HPLC combined with CHEMTAX was useful for identifying freshwater phytoplankton classes and for quantifying the abundance of phytoplankton groups. However, although correlations were significant for six of seven phytoplankton classes studied, they were weak and varied with season. 5. HPLC was valid for quantifying benthic diatom groups in stream samples, whereas for lakes more benthic algal groups were recorded with HPLC than with microscopy and correlations between the two methods were not significant. 6. The use of both HPLC and microscopy is recommended as a cost‐efficient method for analysing many samples. It is crucial, however, that the CHEMTAX software is calibrated with the correct information, and the user is aware of the limitations.     

Comparing microscopic counts and pigment analyses in 46 phytoplankton communities from lakes of different trophic state

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An HPLC analysis of the summer phytoplankton assemblage in Lake Baikal

1. The enormous size and spatial heterogeneity of Lake Baikal require rapid methods for large sample sets. We therefore tested the applicability of a novel, high‐performance liquid chromatography (HPLC)‐based, combination of methods for analysing phytoplankton. In July 2001, samples were collected in a transect across the lake at various depths down to 30 m. Phytoplankton (>3 μm) and autotrophic picoplankton (APP) were counted under light and epifluorescence microscopes, respectively. Pigments were analysed with HPLC. 2. The pigment data allowed the contributions of the dominant phytoplankton groups to the total chlorophyll a (Chl a) in the lake to be estimated by multiple linear regression and by the CHEMTAX matrix factorisation program. Three marker pigments, fucoxanthin, lutein and zeaxanthin, were shown to be useful indicators of the abundance and spatial distribution of certain phytoplankton groups. The relative contributions of the various phytoplankton groups to the total Chl a in the lake determined using these marker pigments were similar, but not identical, to those determined by cell counts. 3. Pigment analyses of isolated strains from Lake Baikal and some European lakes confirmed that phycoerythrin‐containing Cyanobacteria with very high amounts of zeaxanthin were responsible for the low Chl a/zeaxanthin ratios of the water samples. A picoplanktonic species of Eustigmatophyceae was isolated from the lake. Its high violaxanthin content, responsible for very low Chl a/violaxanthin ratios of some water samples, can be used to estimate the contribution of this group to total Chl a.     

QUANTIFICATION OF THE RELATIVE ABUNDANCE OF THE TOXIC DINOFLAGELLATE,KARENIA BREVIS (DINOPHYTA), USING UNIQUE PHOTOPIGMENTS1

Diagnostic photopigment analysis is a useful tool for determining the presence and relative abundance of algal groups in natural phytoplankton assemblages. This approach is especially useful when a genus has a unique photopigment composition. The toxic dinoflagellate Karenia brevis (Davis) G. Hansen & Moestrup comb. nov. shares the diagnostic pigment gyroxanthin‐diester with only a few other dinoflagellates and lacks peridinin, one of the major diagnostic pigments of most dinoflagellate species. In this study, measurements of gyroxanthin‐diester and other diagnostic pigments of K. brevis were incorporated into the initial pigment ratio matrix of the chemical taxonomy program (CHEMTAX) to resolve the relative contribution of K. brevis biomass in mixed estuarine phytoplankton assemblages from Florida and Galveston Bay, Texas. The phytoplankton community composition of the bloom in Galveston Bay was calculated based on cell enumerations and biovolumetric measurements in addition to chl a‐specific photopigment estimates of biomass (HPLC and CHEMTAX). The CHEMTAX and biovolume estimates of the phytoplankton community structure were not significantly different and suggest that the HPLC–CHEMTAX approach provides reasonable estimates of K. brevis biomass in natural assemblages. The gyroxanthin‐diester content per cell of K. brevis from Galveston Bay was significantly higher than in K. brevis collected from the west coast of Florida. This pigment‐based approach provides a useful tool for resolving spatiotemporal distributions of phytoplankton in the presence of K. brevis blooms, when an appropriate initial ratio matrix is applied.     

Does pigment composition reflect phytoplankton community structure in differing temperature and light conditions in a deep alpine lake? An approach using HPLC and delayed fluorescence techniques1

In vivo delayed fluorescence (DF) and HPLC/CHEMTAX pigment analyses were used to investigate seasonal and depth distributions of phytoplankton in a deep alpine mesotrophic lake, Mondsee (Austria). Using chl a equivalents, we determined significant relationships with both approaches. Community structure derived from pigment ratios of homogenous samples was compared with microscopic estimations using biovolume conversion factors. An advantage of the HPLC/CHEMTAX method was that it gave good discrimination among phytoplankton groups when based on a pigment ratio matrix derived from multiple regression analysis. When a single algal group was dominant, such as epilimnetic diatoms or hypolimnetic cyanobacteria in the deep chl maxima, HPLC/CHEMTAX results were significantly correlated with microscopic estimations (diatoms: r = 0.93; cyanobacteria: r = 0.94). Changes in the composition of photosynthetically active pigments were investigated with DF and benefited from excitation spectra that considered all light‐harvesting pigments, which made it possible to assess the enhancement of accessory photosynthetically active pigments relative to active chl a (chl a_DF672). Changes in similarity index, based on normalized DF spectra, confirmed compositional shifts observed by microscopy. At chosen wavelengths of DF spectra, 534 and 586 nm, we generally observed a significantly inverse relationship between normalized DF intensities and temperature and light along both seasonal and depth gradients. The relative increase in photosynthetically active pigments other than chl a_DF672 under low light and temperature was caused by an increasing dominance of diatoms and/or phycobilin‐rich cyanobacteria and Cryptophyta. DF spectra provided a more accurate picture of community pigments acclimated to light and temperature conditions than the β‐carotene:chl a ratio derived from HPLC.     

Pigment ratios and phytoplankton assessment in northern Wisconsin lakes

Nine lakes in northern Wisconsin were sampled from February through September 1996, and HPLC analysis of water column pigments was carried out on epilimnetic seston. Pigment distributions were evaluated throughout the water column during summer in Crystal Lake and Little Rock Lake. The purpose of our study was to investigate the use of phytopigments as markers of the main taxonomic groups of algae. As a first approach, multiple regression of marker pigments against chlorophyll a (chl a) was used to derive the best linear combination of the main xanthophylls (peridinin, fucoxanthin, alloxanthin, lutein, and zeaxanthin). A significant regression equation (r²= 0.98) was obtained for epilimnion data. The good fit indicates that the chl a:xanthophyll ratios were fairly constant in the epilimnion of the nine lakes over time. Chlorophyll a recalculated from the main xanthophylls in each sample showed good agreement with measured chl a in epilimnetic waters. A second approach used the CHEMTAX program to analyze the same data set. CHEMTAX provided estimates of chl a biomass for all algal classes and allowed distinction between diatoms and chrysophytes, and between chlorophytes and euglenophytes. These results showed a reasonably good agreement with biomass estimates from microscope counts, despite uncertainties associated with differences in sampling procedure. Changes of pigment ratios over time in the epilimnetic waters were also investigated, as well as differences between surface and deep samples of Little Rock Lake and Crystal Lake. We found evidence that changes in the ratio of photoprotective pigments to chl a occurred as a response to changes in light climate. Changes were also observed for certain light‐harvesting pigments. The comparison between multiple regression and CHEMTAX analyses for inferring chl a biomass from concentrations of marker pigments highlighted the need to take account of variations in pigment ratio, as well as the need to acquire additional data on the pigment composition of planktonic algae.     

A comparison of HPLC pigment analyses and biovolume estimates of phytoplankton groups in an oligotrophic lake

Assessment of the contribution of distinct algal groups to phytoplanktonbiomass in oligotrophic lakes by marker pigments is comparedwith assessment by cell-counting biovolume estimates. Seasonalsamples from an oligotrophic alpine lake (Redon, Pyrenees) mostlyincluded species of chrysophytes, dinoflagellates, cryptophytesand chlorophytes. The chlorophyl a (Chl a) corresponding toeach algal group was estimated using HPLC pigment analyses andthe CHEMTAX program. Chl a estimates and biovolume showed asignificant correlation for all the groups during the ice-freeseason except for chlorophytes. However, some of the samplesfrom the initial phase of the ice cover presented a clear departurefrom the relationship during the ice-free period in most groups.On the other hand, the ratios between a specific marker pigmentand the biovolume of the marked algal group were significantlyconstant within the photic zone (>1% surface irradiance)for most of the pigments and groups, including chlorophytes.Nevertheless, the ratios increased and showed a large variabilityfor samples below the photic depth or below the ice cover. Theviolaxanthin-chrysophyte biovolume ratio presented an opposedtendency to other pigment-biovolume ratios, which increasedin inverse proportion to the depth of the sample. The resultsare discussed in terms of methodological limitations, acclimationresponses and species composition.     

Phytoplankton of an eutrophic tropical reservoir: comparison of biomass estimated from counts with chlorophyll-a biomass from HPLC measurements

The seasonal variation of phytoplankton in an eutrophic tropical reservoir was evaluated through photosynthetic pigments analyzed by HPLC. The contributions of algal classes to total chlorophyll a (TChl-a) were estimated by two procedures. The first one used fixed marker pigment/chlorophyll a ratio available from culture studies of the major species of each class. In the second procedure, a matrix factorization program (CHEMTAX) was used to analyze the pigment data. The pigment data were compared with carbon biomass estimated from microscope analysis. A significant correlation between total chlorophyll a (measured by HPLC) and total biomass was obtained, indicating only a slight variation in the content of algal chlorophyll a when compared to its fluctuations in carbon biomass. The interpretation of pigment data with CHEMTAX resulted in a good agreement with biomass. Although displaying some differences, the general pattern of the phytoplankton community dynamics and the major shifts in composition, biomass and the cyanobacterial bloom were evidenced. In contrast, Chl-a biomass estimates from fixed Xan/Chl-a ratios presented poor agreement with microscope data and did not register the principal changes in phytoplankton. Our results also highlighted the needs of better understanding of the relationships between marker pigments, chlorophyll-a and algal biomass.     

Pigment-Based Chemotaxonomy - A Quick Alternative to Determine Algal Assemblages in Large Shallow Eutrophic Lake?

Pigment-based chemotaxonomy and CHEMTAX software have proven to be a valuable phytoplankton monitoring tool in marine environments, but are yet underdeveloped to determine algal assemblages in freshwater ecosystems. The main objectives of this study were (1) to compare the results of direct microscopy and CHEMTAX in describing phytoplankton community composition dynamics in a large, shallow and eutrophic lake; (2) to analyze the efficiency of the pigment-based method to detect changes in phytoplankton seasonal dynamics and during rapid bloom periods; (3) to assess the suitability of specific marker pigments and available marker pigment:chlorophyll a ratios to follow seasonal changes in eutrophic freshwater environment. A 5-year (2009-2013) parallel phytoplankton assessment by direct microscopy and by CHEMTAX was conducted using published marker pigment:chlorophyll a ratios. Despite displaying some differences from microscopy results, the pigment-based method successfully described the overall pattern of phytoplankton community dynamics during seasonal cycle in a eutrophic lake. Good agreement between the methods was achieved for most phytoplankton groups - cyanobacteria, chlorophytes, diatoms and cryptophytes. The agreement was poor in case of chrysophytes and dinoflagellates. Our study shows clearly that published marker pigment:chlorophyll a ratios can be used to describe algal class abundances, but they need to be calibrated for specific freshwater environment. Broader use of this method would enable to expand monitoring networks and increase measurement frequencies of freshwater ecosystems to meet the goals of the Water Framework Directive.     

Pigment composition and photoacclimation as keys to the ecological success of Gonyostomum semen (Raphidophyceae,Stramenopiles)

Aquatic habitats are usually structured by light attenuation with depth resulting in different microalgal communities, each one adapted to a certain light regime by their specific pigment composition. Several taxa contain pigments restricted to one phylogenetic group, making them useful as marker pigments in phytoplankton community studies. The nuisance and invasive freshwater microalga Gonyostomum semen (Raphidophyceae) is mainly found in brown water lakes with sharp vertical gradients in light intensity and color. However, its pigment composition and potential photoadaptations have not been comprehensively studied. We analyzed the photopigment composition of 12 genetically different strains of G. semen by high performance liquid chromatography after acclimation to different light conditions. We confirmed the pigments chl a, chl c1c2, diadinoxanthin, trans‐neoxanthin, cis‐neoxanthin, α and β carotene, which have already been reported for G. semen. In addition, we identified, for the first time, the pigments violaxan‐thin, zeaxanthin, and alloxanthin in this species. Alloxanthin has never been observed in raphidophytes before, suggesting differences in evolutionary plastid acquisition between freshwater lineages and the well‐described marine species. The amount of total chl a per cell generally decreased with increasing light intensity. In contrast, the increasing ratios of the prominent pigments diadinoxanthin and alloxanthin per chl a with light intensity suggest photoprotective functions. In addition, we found significant variation in cell‐specific pigment concentration among strains, grouped by lake of origin, which might correspond to genetic differences between strains and populations.     

Does the chlorophyll a content of phytoplankton vary with trophic status in lakes on the New Zealand central volcanic plateau?

Recently, it has been shown that ratios of chlorophyll a toparticulate phosphorus (Chl a/PP) and chlorophyll a to particulatenitrogen (Chl a/PN) were significantly higher in eutrophic thanoligo/mesotrophic waters in 17 lakes on the central volcanicplateau, North Island, New Zealand. This difference was thoughtto be due to an increase in the chlorophyll a content of phytoplanktonin these eutrophic lakes. Corresponding measurements of chlorophylla and phytoplankton cell volume made during this study do notsupport this hypothesis. However, ratios of chlorophyll a toadenosine triphosphate and estimates of percentage phytoplanktonbiomass were significantly higher (P<0.05) in our eutrophicthan oligo/mesotrophic samples, suggesting that Chl a/PP andChl a/PN may be high in eutrophic waters simply because phytoplanktoncomprise more of the total microbial biomass. This hypothesisis supported by a strong linear relationship (r=0.88, P<0.001)between Chl a/PP and percentage phytoplankton biomass in sixof our study lakes where corresponding measurements were made.     

TN : TP ratio and planktivorous fish do not affect nutrient-chlorophyll relationships in shallow lakes

1. In previous work, phytoplankton regulation in freshwater lakes has been associated with many factors. Among these, the ratio of total nitrogen to total phosphorus (TN : TP) has been widely proposed as an index to identify whether phytoplankton are N‐ or P‐limited. From another point of view, it has been suggested that planktivorous fish can be used to control phytoplankton. 2. Large‐scale investigations of phytoplankton biomass [measured as chlorophyll a, (chl‐a)] were carried out in 45 mid‐lower Yangtze shallow lakes to test hypotheses concerning nutrient limitation (assessed with TN : TP ratios) and phytoplankton control by planktivorous fish. 3. Regression analyses indicated that TP was the primary regulating factor and TN the second regulating factor for both annual and summer phytoplankton chl‐a. In separate nutrient–chl‐a regression analyses for lakes of different TN : TP ratios, TP was also superior to TN in predicting chl‐a at all particular TN : TP ranges and over the entire TN : TP spectrum. Further analyses found that chl‐a : TP was not influenced by TN : TP, while chl‐a : TN was positively and highly correlated to TP : TN. 4. Based on these results, and others in the literature, we argue that the TN : TP ratio is inappropriate as an index to identify limiting nutrients. It is almost impossible to specify a ‘cut‐off’ TN : TP ratio to identify a limiting nutrient for a multi‐species community because optimal N : P ratios vary greatly among phytoplankton species. 5. Lakes with yields of planktivorous fish (silver and bighead carp, the species native to China) >100 kg ha^?1 had significantly higher chl‐a and lower Secchi depth than those with yields <100 kg ha^?1. TP–chl‐a and TP–Secchi depth relationships are not significantly different between lakes with yields >100 kg ha^?1 or <100 kg ha^?1. These results indicate that the fish failed to decrease chl‐a yield or enhance Z_SD. Therefore, silver carp and bighead carp are not recommended as a biotic agent for phytoplankton control in lake management if the goal is to control the entire phytoplankton and to enhance water quality.     

Impacts of seabird-derived nutrients on water quality and diatom assemblages from Cape Vera,Devon Island,Canadian High Arctic

Relationships between key phytoplankton attributes including Chl a-specific light absorption, pigment composition and concentration, photosynthesis, primary production and community structure were studied in two open shallow nutrient-poor coastal systems receiving similar amounts of sewage water. Both systems were significantly nitrogen limited. However, differences in wastewater treatment (primary vs secondary) and sewage dilution (50%) between the two systems caused a greater difference between systems than locally around the outflows. For both systems, water at the outlet had significantly lower water transparency caused by a 20% higher absorption by coloured dissolved organic matter. Nutrient concentrations were also elevated, gradually decreasing with distance north (governing current) of the outflows, causing higher abundance of nano-sized phytoplankton, higher content of carotenoid pigments, 20–50% higher Chl a-specific absorption coefficients and higher photosynthetic capacity. Although maximum rates of Chl a-normalised photosynthesis were strongly related to nitrate availability, no effects were found on the derived areal primary production or algal biomass suggesting that photosynthetic and optical parameters are more sensitive indicators of nutrient enrichment than biomass or productivity. Handling editor: Tasman Peter Crowe     

Factors influencing the variability of pigments in the surface sediments of mountain lakes

1. Surface sediment biofilm samples from 82 Pyrenean lakes were analysed for marker pigment composition using high performance liquid chromatography (HPLC). 2. Variability in the pigment composition among lakes was investigated by multivariate statistical analyses using a large data set of factors describing lake chemical, physical, morphological and catchment characteristics. 3. Due to the widely varying light penetration in the lakes, the most significant gradient of pigment composition extended from a benthic to a planktonic signal. The most important pigments in the gradient were alloxanthin (cryptophytes marker pigment, planktonic signal) and diatoxanthin (diatoms marker pigment, benthic signal). The molar ratio between these two marker pigments was positively correlated with lake depth. 4. Chlorophyll‐a preservation was found to be positively related to light penetration and the development of an autothrophic biofilm on the surface sediment and negatively related to decreasing pH and the percentage of alpine meadows in the lake catchments. 5. Zooplankton marker pigments in the surface sediment, including grazing by‐products (e.g. phaeophorbides) and carotenoids (astaxanthin, canthaxanthin, echinenone) incorporated into their tissues, were correlated with the areal abundance of zooplankton. 6. Marker pigments for photosynthetic bacteria, BChl‐e and okenone, were found mainly in relatively shallow lakes with large catchments that are forested, probably because of their higher loading of allochthonous organic matter. 7. The evaluation of a preservation index (Chl‐a expressed as a percentage of a‐phorbins) and the alloxanthin/diatoxanthin ratios throughout the sediment record of mountain lakes can provide evidence of historical changes in the relative importance of planktonic versus benthic primary production and might ultimately be interpreted in terms of climatic or environmental changes.     

Phytoplankton chemotaxonomy in waters around the Svalbard archipelago reveals high amounts of Chl b and presence of gyroxanthin-diester

Phytoplankton pigment signatures from a cruise in 2005 are herein presented and used as a chemotaxonomic tool for phytoplankton diversity in the Svalbard marine archipelago. Studies from these waters have until recently reported only a few groups of phytoplankton, and while this paper is the first to show that the diversity around Svalbard includes all major phytoplankton pigment groups, the results are seen in relation to other similar studies from the Arctic. We present two potentially important marker pigments: prasinoxanthin, originating from prasinophytes, and gyroxanthin-diester, possibly originating from the temperate- and bloom-forming coccolithophore Emiliania huxleyi. Pigment identification by HPLC revealed a significant amount of Chlorophyll b-containing chlorophyceae, euglenophyceae and prasinophyceae. Prasinoxanthin was present at 50% of the examined stations, typically at Chl a maximum (15–25 m depth), in both Atlantic and Arctic water masses. Gyroxanthin-diester, in contrast to prasinoxanthin, was found only in Atlantic water masses and at low concentrations. Our data may be important for the identification and verification of remotely sensed images of different pigment groups of phytoplankton and their corresponding biomass, typically estimated from Chl a. Remotely sensed presence of coccoliths, indicating E. huxleyi at sea surface, is discussed in relation to water masses and pigment signatures at sea surface and Chl a maximum depths.     

Spatial and temporal photosynthetic compartments during summer in Antarctic Lake Kitiesh

Summary Four autotrophic compartments were recognised in Lake Kitiesh, King George Island (Southern Shetland) at the beginning of the summer in 1987: snow microalgae, ice bubble communities, phytoplankton in the water column and benthic communities of moss with epiphytes. Chlorophyll a concentration and pigment absorption spectra were obtained in these four compartments before and/or after the thawing of the ice cover. During the ice free period, carbon fixation and biomass was measured in the phytoplankton and in the benthic moss Campyliadelphus polygamus. From these measurements we conclude that the benthic moss is the most significant autotrophic component in this lake in terms of biomass, chlorophyll a content and primary productivity. The integral assimilation number (The ratio of carbon fixation per unit area to biomass per unit area) values were similar for both phytoplankton and the moss, ranging from 3.6 to 5.4 mg C (mg Chl a)^–1h^–1in phytoplankton and from 4.0 to 6.4 mgC (mg Chl a)^–1h^–1 in the benthic moss. This approach allows comparisons of carbon fixation efficiency of the chlorophyll a under a unit area between compartments in their different light environments.     

Relative effects of Daphnia and Ceriodaphnia on phosphorus-chlorophyll relationships in small urban lakes

Empirical models based on zooplankton biomass were used to predict mean summer chlorophyll a (Chl a) and to examine how zooplankton influenced the total phosphorus (TP) - Chl a relationship. Four years of data were analyzed for three lakes having similar TP concentrations but varied abundances of Daphnia and Ceriodaphnia. Mean TP did not correlate significantly with mean Chl a during the study period, although mean Daphnia density was a good predictor of Chl a concentration (p > 0.001). Both residuals from the TP - Chl a relationship (p > 0.001) and Secchi depth (p > 0.007) were negatively correlated with Daphnia abundance. Ceriodaphnia abundance was positively correlated with Chl a (p > 0.002) and Secchi depth (p > 0.001). Mean size of Daphnia during spring was the best predictor of the Daphnia-Ceriodaphnia shift in mid-summer. Early establishment of a large-sized Daphnia cohort may prevent their summer elimination by Chaoborus and intensify competition with Ceriodaphnia. These results imply an important link between Daphnia and Ceriodaphnia thereby limiting the utility of Chl a - TP model predictions in these small, urban lakes. This linkage and the differential effect of these two zooplankton species on planktonic algae deserve further consideration in similar lakes where phytoplankton and zooplankton tend to be tightly coupled.     

Phytoplankton distribution along trophic gradients within and among reservoirs in Catalonia (Spain)

1. Longitudinal gradients in the epilimnetic waters of stratified reservoirs provide a useful database to study changing environmental conditions. The spatial distribution, assemblage structure and specific adaptations of phytoplankton assemblages can be analysed along these gradients over short time scales. 2. Four reservoirs with a similar typology, located along an altitudinal gradient in the same eco‐region, were sampled along their longitudinal axes. In total, 19 sampling stations provided a trophic spectrum, ranging from oligo‐mesotrophy to hypertrophy, which was quantified by calculating the trophic state index of each sampling station in the four reservoirs. 3. Several patterns in phytoplankton assemblage structure were detected. Total chlorophyll‐a (Chl‐a), biovolume, abundance and the relative biomass contribution of the main algal groups (chlorophytes, cyanobacteria, cryptophytes and diatoms) were highly correlated with their location along the trophic gradient. 4. We also adopted the functional classification of Reynolds et al. (2002) : this effectively summarized differences among phytoplankton assemblages under varying resource‐limiting combinations, especially nutrients and underwater light climate. 5. In terms of relationships with the trophic gradient, diatoms and cyanobacteria exhibited significant opposing trends in both their relative chlorophyll contribution to total Chl‐a and biovolume. Chlorophytes were more abundant at an intermediate position along the trophic spectrum. 6. The identified patterns are consistent with models of self‐organization of phytoplankton assemblages. In particular, light availability was a strong determinant of size and shape diversity, especially in hypertrophic conditions, where ‘R‐strategist’, needle shaped species, dominated the system. In contrast, under decreased availability of nutrients and higher light extinction coefficients (K_d), the system was co‐dominated by C‐ and S‐strategist species, having shapes with a higher surface/volume ratio.     

Phytoplankton pigments and community composition in Lake Tanganyika

1. A 2‐year (2002–2003) survey of chlorophyll and carotenoid pigments is reported for two off‐shore stations of Lake Tanganyika, Kigoma (Tanzania) and Mpulungu (Zambia), and from three cruises between those sites. Chlorophyll a concentrations were low (0.3–3.4 mg m^?3) and average chlorophyll a integrated through the 100 m water column were similar for both stations and years (36.4–41.3 mg m^?2). Most pigments were located in the 0–60 m layer and decreased sharply downward. Chlorophyll a degradation products (phaeophytins and phaeophorbides) were detected at 100 m depth, whereas carotenoids became undetectable. Temporal and seasonal variation of the vertical distribution of pigments was high. 2. The biomass of phytoplankton groups was calculated from marker pigment concentrations over the 0–100 m water column using the CHEMTAX software. On average for the study period, chlorophytes dominated in the northern station, followed by cyanobacteria T1 (type 1, or Synechococcus pigment type), whereas cyanobacteria T1 dominated in the south. Cyanobacteria T2 (type 2, containing echinenone), presumably corresponding to filamentous taxa, were detected in the rainy season. Diatoms (and chrysophytes) developed better in the dry season conditions, with a deep mixed layer and increased nutrient availability. Very large variation in the vertical distribution of algal groups was observed. 3. Our observations on phytoplankton composition are broadly consistent with those from previous studies. Our pigment data provide evidence for the lake‐wide importance of picocyanobacteria and high interannual variation and spatial heterogeneity of phytoplankton in Lake Tanganyika, which may render difficult assessment of long‐term changes in phytoplankton driven by climate change.     

Use of marker pigments and functional groups for assessing the status of phytoplankton assemblages in lakes

Phytoplankton is a key biological quality element for the establishment of the Water Framework Directive (WFD) ecological status in reservoirs and lakes. In freshwaters, inverted microscope examination is the traditional standard method for estimating phytoplankton and assessing taxonomic composition. Based on the enumeration of algal units and measurements for biovolume calculation, this technique is cumbersome and time-consuming. In large monitoring programmes, such as the application of the WFD in lakes and reservoirs, chemotaxonomy (HPLC pigment analysis and CHEMTAX treatment) is ideally suited as an alternative method because it allows the rapid processing of large numbers of samples from numerous locations and depths, thereby providing ideal temporal and spatial resolution. The low taxonomical detail obtained by HPLC and CHEMTAX (phytoplankton classes or phyla) can easily be overcome by a rapid inverted microscope screening with identification of the dominant species. Combining HPLC and microscopy provides a useful method for monitoring phytoplankton assemblages, which can be used to implement the WFD with respect to phytoplankton. Here, we present the application of a method combining marker pigments and microscopy to phytoplankton samples from 12 Belgian reservoirs. This method substantially reduced the workload and enabled us to assess the status of the phytoplankton assemblage in these lakes. The method complies with the WFD, as it takes into account taxonomic composition, assesses abundance and biomass of the phytoplankton taxa, and easily detects blooms. Additionally, a set of templates of probability of occurrence of phytoplankton functional groups at the maximal ecological potential for reservoirs from the Central/Baltic region is presented, based on reference conditions defined for natural lakes from other regions.