扩散生态学及其意义

扩散研究是生态学研究中的一个热点领域 ,而扩散生态学则是生物学领域一门新的分支学科。本文综述了扩散生态学研究的一些基本理论问题 ,包括扩散的定义、扩散生态学的研究内容及其与生物学其它分支学科的关系 ,并阐述了研究扩散的重要意义。扩散生态学的研究内容十分广泛 ,既涉及所有生物 (从微生物到脊椎动物 )的生态学 (如复合种群、群落、生态系统多样性、复杂性和稳定性 )和进化 (如种化 )等理论问题 ,又涉及物种保护、生物多样性保育、有害生物 (包括外来物种 )的控制、流行病防范、环境保护和人口管理等应用问题。因此 ,研究生物的扩散具有十分重要的理论和实践意义。     

Theoretical studies on animal orientation. I. Methodological appraisal of classifications

Research on animal orientation shows a persistent lack of integration. Theories entertained in different “schools” are couched in incommensurable terms. The underlying definitions mostly do not satisfy elementary canons of methodology, and this results in a confusion of empirical and conceptual problems. Application of basic methodology shows that current classifications of orientation patterns are logically incomplete.Moreover, allegedly distinct kinds of orientation wrongly show logical dependencies resulting from poor definitions. Reference to physiological mechanisms, beyond stimuli and responses, must be omitted from definitions for orientation patterns. Likewise, orientation must not be made functional (adaptive) by definition. Vagueness is to some extent unavoidable in general theories.     

生态学原理在废水生物处理中的应用

本文主要讨论了生态因子对生物的影响、同住、互惠共生、捕食、优势菌、生态演替、食物链和食物网等生态学原理在废水生物处理中的应用,同时提出了一些在处理过程中仍然有待于解决的问题。     

The physical dimensions and biological meaning of the coefficients in the Volterra competition equations and their consequences for the possibility of coexistence

Exact definitions in physical and biological terms of the coefficients in Volterra's (1926, 1931) original competition equations are indispensable for the understanding of the system. In agreement with Volterra's own, but not quite sufficient specifications, it is tried in this paper to give more precise definitions of the parameters used by Volterra. This leads to some consequences; i.a. that there does not exist a "principle of competitive exclusion". In order to allow for competitive exclusion - or for stabilization - the Volterra equations need additional biophysical specifications and mathematical modifications. Some such modifications are proposed, for instance for aggressive interference as a function of population numbers.     

Phylogenetic definitions and taxonomic philosophy

An examination of the post-Darwinian history of biological taxonomy reveals an implicit assumption that the definitions of taxon names consist of lists of organismal traits. That assumption represents a failure to grant the concept of evolution a central role in taxonomy, and it causes conflicts between traditional methods of defining taxon names and evolutionary concepts of taxa. Phylogenetic definitions of taxon names (de Queiroz and Gauthier 1990) grant the concept of common ancestry a central role in the definitions of taxon names and thus constitute an important step in the development of phylogenetic taxonomy. By treating phylogenetic relationships rather than organismal traits as necessary and sufficient properties, phylogenetic definitions remove conflicts between the definitions of taxon names and evolutionary concepts of taxa. The general method of definition represented by phylogenetic definitions of clade names can be applied to the names of other kinds of composite wholes, including populations and biological species. That the names of individuals (composite wholes) can be defined in terms of necessary and sufficient properties provides the foundation for a synthesis of seemingly incompatible positions held by contemporary individualists and essentialists concerning the nature of taxa and the definitions of taxon names.     

A theoretical framework for defining some concepts in evolution.

We present a theoretical framework for biological evolution with the intention of giving precise mathematical definitions of some concepts in evolutionary biology such as fitness, evolutionary pressure, specialization and natural selection. In this framework, such concepts are identified with well-known mathematical terms within the theory of dynamical systems. We also discuss some more general implications in evolution; for instance, the fact that our model naturally exhibits a frequency spectrum of the type 1/f for low frequencies of evolutionary events.     

Organismic supercategores: II. On multistable systems

The representation of biological systems in terms of organismic supercategories, introduced in previous papers (Bull. Math. Biophysics,30, 625–636;31, 59–70) is further discussed. To state more clearly this representation some new definitions are introduced. Also, some necessary changes in axiomatics are made. The conclusion is reached that any organismic supercategory has at least one superpushout, and this expresses the fact that biological systems are multistable. This way a connection between some results of Rashevsky’s theory of organismic sets and our results becomes obvious.     

植物群落动态研究进展

以植物群动态的四种主要表现形式,即落的演替、群落的更新、群落的波动以及边比胶淡内容,分别从它们定义、理论、研究方法、研究现状及其发展等方面进行了综述。     

Stochastic models for X chromosome inactivation

Summary A multivariate Gaussian model for mammalian development is presented with the associated biological and mathematical assumptions. Many biological investigations use the female mammal X chromosome to test hypotheses and to estimate parameters of the developmental system. In particular, Lyon's (1961) hypotheses are used as a basis of the mathematical model. Experimental mouse data and three sets of human experimental data are analyzed using the hypothesized Gaussian model. The estimated biological parameters are consistent with some current biological theories.     

Problems Associated with Biological Markers of Alzheimer’s Disease

The etiopathogenesis of Alzheimer’s disease (AD) is still unclear, although clinical diagnostic criteria exist and the neuropathology of AD has been studied in great detail during the last 20 years. The present study addresses certain problems in the search for biological markers for the diagnosis, as well as in the follow-up of the course of AD and its differential diagnosis and reports some of our own observations in comparison with other studies. These include protein, genetic and neuroimaging markers. The definitions of biological markers and search strategies are also discussed. Special issue dedicated to Dr. Simo S. Oja     

Protention and retention in biological systems

This article proposes an abstract mathematical frame for describing some features of cognitive and biological time. We focus here on the so called “extended present” as a result of protentional and retentional activities (memory and anticipation). Memory, as retention, is treated in some physical theories (relaxation phenomena, which will inspire our approach), while protention (or anticipation) seems outside the scope of physics. We then suggest a simple functional representation of biological protention. This allows us to introduce the abstract notion of “biological inertia”.     

生物进化与特化

作者试图把生物的适应性变化区分成生物的进化和特化两种不同的概念,进化即生物逐渐演变,向前发展的过程;特化是指生物的水平发展的物种形成过程,即生物多样性的形成过程,这种区分可以避免许多不必要的争论,把这个新的概念体系和以往人们对生物进化研究的理论相结合。并用该方法重新解释以往人们的研究发现,可以看出生物发展的历史就是生物进化和特化交替进行的历史,以此可解释许多不同理论之间的矛盾。     

Theoretical description of the ion transport across nanopores with titratable fixed charges

Recently developed nanometer-sized synthetic pores display several properties so far believed to be distinctive features of a large variety of biological wide ion channels. Thus conductance in the pS-nS range, pH-dependent ion selectivity, fluctuations of current between open and closed states, flux inhibition caused by protons or divalent cations, current rectification, and the ability to perform selective macromolecule sizing and counting are found in synthetic and biological channels alike. Despite other differences such as pore size and geometry, the similarities open a new field for exploring specific technological applications via the chemical modification of synthetic pores with biological molecules. This article reviews some of the basic concepts and theories relevant to ion transport in nanopores with titratable charges stressing the analogies between synthetic pores and biological ion channels. The ultimate goal is to show that continuum theories may account for the essential features of these systems. A simple electrodiffusion model and its comparison with experimental results are chosen as a case study.     

Proposed definitions related to induced disease resistance

A clear definition of induced disease resistance is lacking, even though the area has been extensively researched and described. The lack of a precise definition leads to potential confusion on whether an underlying mechanism for biological control is induced resistance. We propose definitions, which were developed at a NATO Advanced Research Workshop on biological control, for induced disease resistance and related terms. These definitions are intended to invoke debate and increase effective communication among investigators of induced resistance.     

Evolution of aging theories: Why modern programmed aging concepts are transforming medical research

Programmed aging refers to the idea that senescence in humans and other organisms is purposely caused by evolved biological mechanisms to obtain an evolutionary advantage. Until recently, programmed aging was considered theoretically impossible because of the mechanics of the evolution process, and medical research was based on the idea that aging was not programmed. Theorists struggled for more than a century in efforts to develop non-programmed theories that fit observations, without obtaining a consensus supporting any non-programmed theory. Empirical evidence of programmed lifespan limitations continued to accumulate. More recently, developments, especially in our understanding of biological inheritance, have exposed major issues and complexities regarding the process of evolution, some of which explicitly enable programmed aging of mammals. Consequently, science-based opposition to programmed aging has dramatically declined. This progression has major implications for medical research, because the theories suggest that very different biological mechanisms are ultimately responsible for highly age-related diseases that now represent most research efforts and health costs. Most particularly, programmed theories suggest that aging per se is a treatable condition and suggest a second path toward treating and preventing age-related diseases that can be exploited in addition to the traditional disease-specific approaches. The theories also make predictions regarding the nature of biological aging mechanisms and therefore suggest research directions. This article discusses developments of evolutionary mechanics, the consequent programmed aging theories, and logical inferences concerning biological aging mechanisms. It concludes that major medical research organizations cannot afford to ignore programmed aging concepts in assigning research resources and directions.     

What,if anything,is sympatric speciation?

Sympatric speciation has always fascinated evolutionary biologists, and for good reason; it pits diversifying selection directly against the tendency of sexual reproduction to homogenize populations. However, different investigators have used different definitions of sympatric speciation and different criteria for diagnosing cases of sympatric speciation. Here, we explore some of the definitions that have been used in empirical and theoretical studies. Definitions based on biogeography do not always produce the same conclusions as definitions based on population genetics. The most precise definitions make sympatric speciation an infinitesimal end point of a continuum. Because it is virtually impossible to demonstrate the occurrence of such a theoretical extreme, we argue that testing whether a case fits a particular definition is less informative than evaluating the biological processes affecting divergence. We do not deny the importance of geographical context for understanding divergence. Rather, we believe this context can be better understood by modelling and measuring quantities, such as gene flow and selection, rather than assigning cases to discrete categories like sympatric and allopatric speciation.     

On the relationship between evolutionary and psychological definitions of altruism and selfishness

I examine the relationship between evolutionary definitions of altruism that are based on fitness effects and psychological definitions that are based on the motives of the actor. I show that evolutionary altruism can be motivated by proximate mechanisms that are psychologically either altruistic or selfish. I also show that evolutionary definitions do rely upon motives as a metaphor in which the outcome of natural selection is compared to the decisions of a psychologically selfish (or altruistic) individual. Ignoring the precise nature of both psychological and evolutionary definitions has obscured many important issues, including the biological roots of psychological altruism.     

Common Physical Errors in the Description of Water Fluxes in the Soil–Plant–Atmosphere System

Widely accepted concepts and definitions concerning the driving forces of upward water fluxes, such as osmotic pressure (OP) and water potential (WP), were analyzed in the soil–plant–atmosphere system. It is emphasized that, at present, there are no physically correct definitions of the mentioned parameters, because such a concept as the heat pressure of molecules in a liquid has not been introduced. Physical definitions of OP and WP are presented. It is demonstrated that WP is not a driving force for water fluxes at the water–vapor interface. The fundamental difference in mechanisms of diffusion fluxes and active transport across the biological membranes is analyzed. The biological specificity of driving forces at the soil–root and leaf–air interfaces is described.