Inside and outside of the trypanosome flagellum:a multifunctional organelle

Amongst the earliest eukaryotes, trypanosomes have developed conventional organelles but sometimes with extreme features rarely seen in other organisms. This is the case of the flagellum, containing conventional and unique structures whose role in infectivity is still enigmatic.     

Unusual Structures in the Flagellar Apparatus of a Strain of Trypanosoma cruzi*

Certain structures, associated with the flagellum, and which had hitherto been described as appearing occasionally in some species of trypanosomes, were found very frequently in epimastigote forms of strain F of Trypanosoma cruzi: (a) a group of tubular elements in an electron-dense mass enclosed within a swelling of the flagellar membrane as the flagellum emerges from its reservoir; (b) an expansion of the flagellar membrane at the point of the above swelling, which in cross-sections appears as a ring; and (c) an electron dense band in the body of the organism alongside the border of the flagellar pocket. The possible significance of these structures and the fact that so far they have been found only in one strain of T. cruzi are discussed.     

ATPase Activity in Flagella from Euglena gracilis. Localization of the Enzyme and Effects of Detergents*

SYNOPSIS. The biochemical effects of some detergents on the ATPase activity of isolated flagella from Euglena gracilis are related to morphologic obliterations induced by those detergents. Enzymic activity can be localized by electron microscopy along the microtubules and also on the paraflagellar rod. The nonionic detergent digitonin solubilizes the enzyme linked to dyneinic arms, whereas the activity linked to residual structures appears enhanced. These results support the hypothesis that the paraflagellar rod may be a structure actively related to the motility of this type of flagellum.     

The Fine Structure of the Colonial Colorless Flagellates Rhipidodendron splendidum Stein and Spongomonas uvella Stein with Special Reference to the Flagellar Apparatus

SYNOPSIS. The cell structure of the colorless colonial flagellates Rhipidodendron splendidum Stein and Spongomonas uvella Stein has been examined by electron microscopy to assertain their phylogenetic affinities. The cylindrical cells of R. splendidum have 2 smooth flagella of equal length, an asymmetrical flagellar pocket supported by microtubules, and a curved pit between the latter and an anterior prolongation of the cell. The matrix of the branched tubes comprising the fanshaped colony is composed largely of dense spherules which are produced in special cytoplasmic vesicles some of which contain symbiotic bacteria. The anterior nucleus has a flattened sac pressed closely against its posterior end. The sac has a long tail extending deep into the cytoplasm, a single bounding membrane and homogeneous contents. Several types of vesicle are described but food vacuoles and contractile vacuoles could not be positively identified. A kinetoplast mitochondrion is not present. The various cross-banded, microtubular and amorphous components of the complex and highly asymmetrical flagellar root system are described in detail and a 3-dimensional reconstruction is provided.
The ovoid cells of S. uvella are basically similar to those of R. splendidum ; though a nuclear sac is missing, there are some detailed differences in the structure of the flagellar root system, and bacteria are never present in the vesicles producing the matrix granules. Notwithstanding much similarity, Rhipidodendron is not combined with Spongomonas because of the basic difference in colony structure.
The possible relationships of R. splendidum and S. uvella with other groups are examined and it is concluded that they cannot be considered as colorless chrysomonads as previously thought or considered to be related to any of the other orders comprising the class Phytomastigophorea. They do not, however, appear to be related to any of the orders at present comprising the Zoomastigophorea.     

A Trypanosoma brucei protein required for maintenance of the flagellum attachment zone and flagellar pocket ER domains

Trypanosomes and Leishmanias are important human parasites whose cellular architecture is centred on the single flagellum. In trypanosomes, this flagellum is attached to the cell along a complex flagellum attachment zone (FAZ), comprising flagellar and cytoplasmic components, the integrity of which is required for correct cell morphogenesis and division. The cytoplasmic FAZ cytoskeleton is conspicuously associated with a sheet of endoplasmic reticulum termed the 'FAZ ER'. In the present work, 3D electron tomography of bloodstream form trypanosomes was used to clarify the nature of the FAZ ER. We also identified TbVAP, a T. brucei protein whose knockdown by RNAi in procyclic form cells leads to a dramatic reduction in the FAZ ER, and in the ER associated with the flagellar pocket. TbVAP is an orthologue of VAMP-associated proteins (VAPs), integral ER membrane proteins whose mutation in humans has been linked to familial motor neuron disease. The localisation of tagged TbVAP and the phenotype of TbVAP RNAi in procyclic form trypanosomes are consistent with a function for TbVAP in the maintenance of sub-populations of the ER associated with the FAZ and the flagellar pocket. Nevertheless, depletion of TbVAP did not affect cell viability or cell cycle progression.     

The Asymmetric Flagellar Distribution and Motility of Escherichia coli

Rod-shaped bacteria such as Escherichia coli divide by binary fission. They inherit an old pole from the parent cell. The new pole is recently derived from the septum. Because the chemoreceptor accumulates linearly with time on the cell pole, the old pole carries more receptors than does the new pole. Here, further evidence is provided that the old pole appears more frequently at the rear when bacteria swim. This phenomenon had been observed, yet not extensively explored in the literature. The biased swimming orientation is the consequence of the asymmetric distribution of flagella over the cell surface. On about 75% of cells, there are more flagella on the old-pole half of the cell than on the new-pole half, regardless of growth conditions. Most flagella are lateral, and few were found on the cell pole per se. The asymmetric flagellar distribution makes cells more efficient in chemotaxis. Both swimming orientation and receptor localization are components of chemotaxis, by which bacteria follow environmental stimuli. If unipolarly flagellated cells, such as the swarmer cells of Caulobacter crescentus, are regarded as 100% polar with respect to chemotaxis, E. coli is about 75%. The difference is quantitative. The peritrichous flagellation might enhance the motility and chemotaxis in the viscous environment of enteric bacteria.     

The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx

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The Fine Structure of the Centriolar Apparatus and Associated Structures in the Flagellates Deltotrichonympha and Koruga. II. Division

SYNOPSIS. At division of Deltotrichonympha operculata and Koruga bonita from the Australian termite, Mastotermes darwiniensis , the 2 centriolar bodies separate, each becoming a mitotic center. Spindle microtubules develop from the lower end of each centriolar body and radiate towards the elongating nucleus. A new rostrum is formed in association with each centriolar body. Thus, centriolar bodies which lack the structure of typical centrioles can nevertheless function as division centers during mitosis.     

Male reproductive investment and queen mating-frequency in fungus-growing ants

Sperm number and male accessory gland compounds are often importantdeterminants of male mating success but have been little studiedin social insects. This is because mating in social insectsis often difficult to manipulate experimentally, and first evidencefor an explicit influence of accessory gland secretions on malemating success in social insects was obtained only recently.Here we perform a comparative analysis of male sexual organsacross 11 species of attine fungus-growing ants, representingboth genera with single- and multiple-queen mating. We foundthat the general morphology of the male sexual organs was verysimilar across all species, but the relative sizes of the accessoryglands and the sperm-containing accessory testes vary significantlyacross species. Small testes and large accessory glands characterizespecies with singly mated queens, whereas the opposite is foundin species with multiply mated queens. However, in the socialparasite Acromyrmex insinuator, in which queens have secondarilyreverted to single mating, males have accessory gland characteristicsreminiscent of the lower attine ants, but without having significantlyreduced their investment in sperm production. We hypothesizethat the main function of accessory gland compounds in attineants is to monopolize male paternity in similar ways as knownfrom other social insects. This would imply that the evolutionof polyandry in the terminal clade of the fungus-growing ants(the leafcutter ants) has resulted in selection for decreasedinvestment by males in accessory gland secretions and increasedinvestment in sperm number, in response to sperm competitionfor sperm storage.     

Topography of Fos-Immunoreactive and NADPH-d-Reactive Neurons in the Limbic Structures of the Basal Forebrain and in the Hypothalamus during Realization of Motivated Operant Movements in Rats

We estimated in rats the expression of early gene c-fos (marker of neuronal activation) and NADPH-diaphorase activity (NO-synthase marker) in the limbic structures of the basal forebrain and in the hypothalamus. Estimations were performed in the norm, in the state of starvation, and after realization of long-lasting (repeated 4 to 12 times per minute for 30 min) motivated stereotyped food-procuring forelimb movements. In food-deprived animals, a significantly greater (Р < 0.05), as compared with the control, number of Fos-immunoreactive (Fos-ir) and NADPH-diaphorase-reactive (NADPH-dr) neurons was observed in limbic structures, namely in the medial septum (MS), nuclei of the vertical and horizontal branches of the diagonal fascia (VDB and НDB), magnocellular preoptic nucleus (MCPO), complex of the substantia innominata−basal nucleus of Meynert of the pallidum, SI-GP(B), as well as in the laterodorsal tegmental nucleus (LDTg), medial part of the pallidum (MGP), paraventricular and lateral nuclei of the hypothalamus (Pa and LH), and islands of Calleja (ICj and ICjM). In the limbic structures and pontine nuclei of rats of the experimental group (that performed operant movements), greater mean densities of labeled neurons were found in the succession LDTg < SI < MCPO < GP(B) < MS < VDB < HDB. The maximum mean density of Fos-ir neurons (13.8 ± 0.9 labeled nuclei within 200 × 200 μm² area) was found in the HDB. In the hypothalamic nuclei of starving rats, c-fos expression was two times higher than that in the control. After realization of operant movements, the intensity of expression in the LH was somewhat smaller, while in the Ра it was higher. The maximum density of NADPH-dr neurons was observed in the Pa (303.4 ± 18.7 cells), in the ICj and ICjM (287 ± 11.6 and 260 ± 8.7 neurons, respectively), and in the MGP (93 ± 6.7 labeled cells). When analyzing the distribution of labeled neurons in experimental rats, we found high densities of double-labeled cells (Fos + NADPH-d positivity) in the Pa, MGP, ICj, and ICjM. Such specificity of changes in the c-fos expression and NADPH-d reactivity in the hypothalamus correlates, perhaps, with the formation of motivation signals related to a delay in food accessibility and supply of food. Modifications of neuronal activity in limbic structures reflect involvement of the latter in the formation of motor programs for food-procuring movements and their realization. Neirofiziologiya/Neurophysiology, Vol. 41, No. 1, pp. 32–40, January–February, 2009.     

大葱卵器及受精后助细胞的超微结构

章丘大葱（Ａllium fistulosum L.cv.Zhangqiu)的卵器由１个卵细胞及２个助细胞组成,观察到不少卵器没有卵细胞,只有２个助细胞。卵细胞的核及大部分细胞质位于细胞的合点端,１个大液泡占据了细胞其他部位。卵细胞含有很多的核糖体及多聚核糖体、嵴明显的线粒体、粗面内质网、高尔基体具小泡,卵细胞似是一个活跃的细胞。细胞外被细胞壁,其合点端及侧方与助细胞共同壁不连续,助细胞有一较大的核,位于细胞膨大的部位,众多的小液泡遍布细胞中。核糖体及聚合核糖体、线粒体,粗面内质网及风心圆环状粗面内质丰富,高尔基体及小泡常见,反映了其活跃的代谢作用。助细胞合点端及侧方与卵细胞、中央细胞的共同壁不连续,与卵细胞共同壁含胞间连丝,壁不连续处,有不状多层膜结构伸入卵细胞质,显示助细胞可能对卵细胞提供营养,伟粉后,一个助细胞退化,宿存助细胞至随胚胚期尚存在,它经历了一个缓慢的退化过程,出现质壁分离,细胞质变稀,液泡扩大,细胞器逐渐减少,在椭形胚期,宿存助细胞核内的染色质及核仁消失,有细胞质侵入核内,因宿存助细胞壁变厚,细胞质出现现脂滴,宿存助细胞可能仍有合成功能,宿存助细胞壁出现若干无壁部位,细胞内的营养物质可能通过无壁部位向胚乳转运,供游离核胚乳及胚乳细胞化初期的发育。     

Planar Cell Polarity Signaling in Collective Cell Movements During Morphogenesis and Disease

Collective and directed cell movements are crucial for diverse developmental processes in the animal kingdom, but they are also involved in wound repair and disease. During these processes groups of cells are oriented within the tissue plane, which is referred to as planar cell polarity (PCP). This requires a tight regulation that is in part conducted by the PCP pathway. Although this pathway was initially characterized in flies, subsequent studies in vertebrates revealed a set of conserved core factors but also effector molecules and signal modulators, which build the fundamental PCP machinery. The PCP pathway in Drosophila regulates several developmental processes involving collective cell movements such as border cell migration during oogenesis, ommatidial rotation during eye development, and embryonic dorsal closure. During vertebrate embryogenesis, PCP signaling also controls collective and directed cell movements including convergent extension during gastrulation, neural tube closure, neural crest cell migration, or heart morphogenesis. Similarly, PCP signaling is linked to processes such as wound repair, and cancer invasion and metastasis in adults. As a consequence, disruption of PCP signaling leads to pathological conditions. In this review, we will summarize recent findings about the role of PCP signaling in collective cell movements in flies and vertebrates. In addition, we will focus on how studies in Drosophila have been relevant to our understanding of the PCP molecular machinery and will describe several developmental defects and human disorders in which PCP signaling is compromised. Therefore, new discoveries about the contribution of this pathway to collective cell movements could provide new potential diagnostic and therapeutic targets for these disorders.     

Molybdenum complexes with O,N,S donor ligands as models for active sites in oxotransferases and hydroxylases

A series of homologous mononuclear dioxomolybdenum complexes were prepared and fully characterized with structurally related thiosemicarbazone ligands supplying a tridentate O,N,S donor set to the central metal atom. The ligands are derived from the prototype 2-hydroxybenzaldehyde-4-triphenylmethylthiosemicarbazone (H₂L). Within this series the crystal structures of 11 complex compounds [MoO₂(LRⁿ)(dmf)] and [MoO₂(LRⁿ)(MeOH)] were determined showing characteristic differences in the gross structural properties of the central metal core. From the variation of substituents in this ligand library the influences of electronic ligand effects on the spectroscopic, electrochemical, and functional properties of these biomimetic model complexes for molybdenum-containing oxotransferases are reported.     

壤中流模型研究的现状及存在问题

对国内外壤中流模型与模拟进行了较为系统的介绍,并针对这些模型提出了一种壤中流模型分类的方法,即根据模型所依据的主要原理将壤中流模型分为三大类：１）Ｒｉｃｈａｒｄｓ模型;２）动力波模型;３）贮水泄流模型．Ｒｉｃｈａｒｄｓ模型又可分为一维Ｒｉｃｈａｒｄｓ模型、二维Ｒｉｃｈａｒｄｓ模型和三维Ｒｉｃｈａｒｄｓ模型;贮水泄流模型又可分为动力贮水泄流模型和Ｂｏｕｓｉｎｅｓｑ贮水泄流模型．同时,将这３类模型进行对比,指出了它们各自优点和不足．     

Recent developments in the monitoring,modeling and control of biological production systems

Current trends in the development of methods for monitoring, modeling and controlling biological production systems are reviewed from a bioengineering perspective. The ability to measure intracellular conditions in bioprocesses using genomics and other bioinformatics tools is addressed. Devices provided via micromachining techniques and new real-time optical technology are other novel methods that may facilitate biosystem engineering. Mathematical modeling of data obtained from bioinformatics or real-time monitoring methods are necessary in order to handle the dense flows of data that are generated. Furthermore, control methods must be able to cope with these data flows in efficient ways that can be implemented in plant-wide computer communication systems.Mini-review for the proceedings of the M3C conference     

华南南亚热带植被第一性生产量的影响因素及预测模型

讨论植被类型、降雨、湿度、土壤条件对华南南亚热带植被第一性生产量的影响。比较各种预测第一性生产量的气候模型,为更好地预测和提高华南南亚热带植被第一性生产量提供依据。     

Occurrence and distribution of free flavonoid aglycones in plants

Flavonoids are widely present in plants as water-soluble glycosides but the lipophilic free aglycones are far less abundant. The 462 flavonoids reported so far to be present in the free state and their plant sources are listed. Evaluation of these data reveals a correlation in most cases between the occurrence of flavonoid aglycones, the presence of secretory structures and the production of other lipophilic plant products. Their accumulation in some plant organs and in certain taxa is discussed. Special attention is given to their occurrence in materials deposited externally on leaves and buds.     

Properties of star-branched and linear chains in confined space. A Monte-Carlo study

We have studied the properties of simple models of linear and star-branched polymer chains confined in a slit formed by two parallel impenetrable walls. The polymer chains consisted of identical united atoms (homopolymers) and were restricted to a simple cubic lattice. Two macromolecular architectures of the chain: linear and regular stars with three branches of equal length, were studied. The excluded volume was the only potential introduced into the model and thus the system was athermal. Monte-Carlo simulations with the sampling algorithm based on the chains local changes of conformation were carried out for chains with different lengths as well as for different distances between the confining surfaces. We found that the properties of model chains differ for both macromolecular architectures but a universal behavior for both kinds of chains was also found. Investigation of the frequency of chain-wall contacts shows that the ends of the chains are much more mobile than the rest of the chain, especially in the vicinity of the branching point in star polymers.Figure The scheme of a star-branched (left) and a linear (right) chain located between two parallel impenetrable surfaces.     

Improving the Development and Use of Biologically Based Dose Response Models (BBDR) in Risk Assessment

Biologically based dose-response (BBDR) models predict health outcomes (response) resulting from the presence of a toxicant at a biological target (dose). The benefits of BBDR models are many, and research programs are increasingly focusing on mechanistic research to support model development; however, progress has been slow. Impediments to progress include the complexity of dose response modeling, the need for a multidisciplinary team and consistent funding support, and difficulty in identifying and extracting the needed data. Of immediate concern is the lack of transparency of published models to the supporting data and literature, difficulty in accessing model code and simulation conditions sufficient to allow independent replication of results, and absence of well-defined quality criteria. Suggestions are presented to improve the development and use of BBDR models in risk assessment and to address the above limitations. Examples from BBDR models for methylmercury neurotoxicity and 5-fluorouracil embryotoxicity are presented to illustrate the suggestions including what kinds of databases are needed to support model development and transparency, quality assurance for modeling, and how the internet can advance database development and collaboration within the biological modeling community.