Characterization of Archaeal Community in Contaminated and Uncontaminated Surface Stream Sediments

Archaeal communities from mercury and uranium-contaminated freshwater stream sediments were characterized and compared to archaeal communities present in an uncontaminated stream located in the vicinity of Oak Ridge, TN, USA. The distribution of the Archaea was determined by pyrosequencing analysis of the V4 region of 16S rRNA amplified from 12 streambed surface sediments. Crenarchaeota comprised 76% of the 1,670 archaeal sequences and the remaining 24% were from Euryarchaeota. Phylogenetic analysis further classified the Crenarchaeota as a Freshwater Group, Miscellaneous Crenarchaeota group, Group I3, Rice Cluster VI and IV, Marine Group I and Marine Benthic Group B; and the Euryarchaeota into Methanomicrobiales, Methanosarcinales, Methanobacteriales, Rice Cluster III, Marine Benthic Group D, Deep Sea Hydrothermal Vent Euryarchaeota 1 and Eury 5. All groups were previously described. Both hydrogen- and acetate-dependent methanogens were found in all samples. Most of the groups (with 60% of the sequences) described in this study were not similar to any cultivated isolates, making it difficult to discern their function in the freshwater microbial community. A significant decrease in the number of sequences, as well as in the diversity of archaeal communities was found in the contaminated sites. The Marine Group I, including the ammonia oxidizer Nitrosopumilus maritimus, was the dominant group in both mercury and uranium/nitrate-contaminated sites. The uranium-contaminated site also contained a high concentration of nitrate, thus Marine Group I may play a role in nitrogen cycle.     

The use of radiotelemetry to assess the time needed to acclimatize guineapigs following several hours of ground transport

The objective of this study was to investigate the effect of ground transportation on guineapigs. Physiological parameters, i.e. heart rate (HR), body temperature (BT) and activity (ACT), were measured before and after transport, using previously implanted radiotelemetry transmitters. Body weight was measured before and after transport. After a postsurgical recovery period and data recording at the breeder's facility, the animals were transported for 2.25 h (Group 1) and for 7.5 h (Group 2) to a different animal facility. Data collection started immediately after arrival at the second animal facility. All parameters measured changed significantly after transport. These results suggest that a 10- to 12-day period is required for guineapigs to return to pre-transport levels of HR, BT and ACT.     

Time spent in the drift by downstream-dispersing invertebrates in a Lake District stream

1. The objective was to determine the time spent in the drift by different taxa of stream invertebrates. Most data were obtained from an earlier experimental study to determine the distances travelled by drifting invertebrates of 16 taxa in Wilfin Beck. Experiments were performed at two sites: ‘site 4’ in a stony, fast‐flowing, section of stream, ‘site 3’ in a deeper stream section where macrophytes were abundant. 2. The significant relationship between the mean distance x (m) travelled in the drift and modal water velocity V (m s^?1) was described by a power function in the earlier study but, as the power was close to one, a linear relationship has now been found to provide a satisfactory model. The rate of increase in x (m) with increasing V varied considerably between taxa. The mean time [mean t (s)] spent in the drift was estimated by dividing each x (m) by the appropriate V. Mean t (s) for each taxon was usually very constant over a wide range of V at each site (0.10–0.60 m s^?1 at site 4, 0.15–0.53 m s^?1 at site 3). A simple model estimated the time spent in the drift by different percentages (e.g. 75, 50, 10 and 1%) of the drifting invertebrates. 3. The experimental taxa at site 4 were divided into three groups according to the mean time spent in the drift. Mean t (s) for the five taxa in group 1 (32.8 s) was not significantly different from that obtained in control experiments with a mixed group of dead invertebrates. A similar time (33.0 s) was obtained for the five taxa in group 2, except at water velocities less than 0.2 m s^?1 when the mean t (s) decreased to 15–21 s. Mean t (s) was constant for each of the six taxa in group 3, and significantly less than that for groups 1 and 2. Mean values ranged from 28.8 s for Ephemerella ignita to only 9.4 s for Baetis rhodani and Gammarus pulex. All mean values were lower at site 3, presumably because of the dense stands of macrophytes, with mean values of 12.9 s for the five taxa in group 1 (equalling the value for dead invertebrates). Mean values for the six remaining taxa varied from 6.4 s for Simulium spp. to only 4.9 s for Baetis rhodani and 4.8 s for Gammarus pulex. It was concluded from a discussion of this study that the time spent in the drift may provide a useful measure for comparing the downstream dispersal of invertebrates in different streams, and may be a useful addition to models for the drift feeding of salmonids.     

You don’t belong here: explaining the excess of rare species in terms of habitat,space and time

Ecological communities are composed of a few common and several rare species. Many studies have evaluated the shape of abundance distribution curves, but few studies have assessed the causes of rarity. Using a dataset of stream macroinvertebrates, we investigated whether the excess of rare species in three focal communities of stones in riffles were common 1) in other habitats at the same stream site and period of sampling (environment), 2) in other stream sites in the same habitat and period of sampling (space), and 3) in other years in the same stream site and habitat (time). We observed that around 28% of the rare species were common in other habitats (environment), stream sites (space) or years (time). Among the three factors, rarity was mostly explained by habitat type, whereas a significant portion of the rare species in riffles were common in pools, submerged roots of terrestrial plants or in partially submerged moss patches. This result suggests that the presence in non‐optimum habitat is a strong determinant of the rarity observed in natural communities and most rare species are due to sampling artifacts or accidentally sampled transient species.     

Ovarian maturity as modified by partial sinistral ovariectomy and its transplantation in immature domestic fowl

In laparotomized hens (70d old), about one-fourth part of the left ovary was removed in Group I and about one-half of it in Group II. In Group III, about one-half of the ovary was left intact and the other half was transplanted to the lateral side, near the caudal lobe of the left kidney. In Group IV, the left ovary was removed completely and about one-half of it was transplanted in the same hen as in Group III, and finally, Group V was run as a shamoperated control. On slaughtering, the gonadal status was examined at the age of 130d. The presence of yellow developing follicles were found in all the hens in Group IV (5 5 (b )), followed by Group II (7 9 (b )), Group III at transplanted site (3 5 (ab )), Group I (6 10 (ab )) Group V (1 12 (a )) and Group III at original site (0 5 (a )). The average number of yellow follicles were recorded 4.5 in Group 1, 5.2 in Group II, nil at original site and 6.3 at transplanted site in Group III, 7.6 in Group IV and 3.0 in Group V, considering those hens bearing yellow follicles only. These observations clearly indicated that the shortening of the ovary advances the maturity of the remaining intact part of the ovary. This may be due to more availability of gonadotropins per unit of ovarian tissue. Transplantation of the ovary with severed nerves hastened its development, indicating that some suppressive role on gonadal maturity may be imposed by the intact nerves.     

Acid Stream Water Remediation Using Limestone Sand on Bear Run in Southwestern Pennsylvania

Instream limestone sand application is used at many sites in Pennsylvania to neutralize acidic stream water resulting from acid deposition. However, questions remain about the effectiveness of limestone sand in the treatment of acid waters, such as reduced contact time at high flow, remobilization of aluminum, and adverse effects on macroinvertebrates. A 1‐year evaluation of limestone sand application to Bear Run, an acidic stream in southwestern Pennsylvania, was begun in 1999. Another nearby acid stream, Linn Run, served as a control. Water quality during baseflow and episodic acidification events, along with fish and macroinvertebrates, were monitored to evaluate impacts of the sand application. Hydrogen ion (H ⁺ ) concentration and total dissolved aluminum (TDA) were significantly reduced, and acid neutralizing capacity was significantly increased downstream of the limestone sand application compared with the upstream site on Bear Run. These parameters at the downstream sites were also different (∝ 0.10) from the comparable sites on the control stream. TDA and hydrogen ion concentrations were significantly decreased (∝ 0.10) compared with concentrations before the sand application to Bear Run but not on the control stream. No fish were present upstream of the sand application site, and only a few fish were found downstream at the mouth of Bear Run. Standing crop, number of taxa, and Shannon‐Weaver diversity index values indicated that macroinvertebrate populations were negatively impacted 300 m downstream from the sand application and improved at the site 1,600 m downstream. Although water quality was improved on Bear Run, benefits to macroinvertebrates depended on downstream location, and fish populations did not show improvement.     

Factors influencing the spatial distribution patterns of the bullhead (<Emphasis Type="Italic">Cottus gobio</Emphasis> L., Teleostei Cottidae): a multi-scale study

We used general linear modelling to assess the influence of environmental variables on the spatial distribution patterns of the bullhead (Cottus gobio) at stream system, site, and microhabitat scales in southwestern France. Bullheads occurred at 67 sites (out of 554 sampling sites), chiefly close to the source, in small and shallow streams. Population density at a site was primarily influenced by thermal conditions. Stream width was negatively related to the probability of presence of bullheads within the stream system, but positively related to local density, showing that bullhead density could increase within a range of stream width, but that wider rivers were unsuitable. Slope was negatively correlated to bullhead’s occurrence and local density, and depth was negatively correlated to local density and microhabitat use, suggesting that bullhead’s shimming performance was weak under greater erosive forces. Therefore, the most significant results suggested that the distribution of populations and individuals was first governed by the suitability of physical and hydraulic habitat, then population dynamics at a site was mainly governed by the thermal regime. Multi-scale studies of factors influencing a species’ distribution thus allow to integrate patterns observed at different scales, and enhance our understanding of interactions between animals and their environment. Such models are essential in the exploratory phase of fundamental and applied investigations, because they help to target further research, and they should influence the measures to be taken in field surveys or conservation plans.     

溪流大小及其空间位置对鱼类群落结构的影响

2008年10月和2009年10月分别对黄山地区阊江流域与青弋江流域1-3级浅水溪流中鱼类群落结构进行了研究,着重探讨了溪流大小及其空间位置对鱼类群落空间分布的影响。研究共捕获35种鱼类,阊江和青弋江分别为26和29种,其Jaccard相似性系数为57.1%;两流域间每样点的物种数差异显著,个体数差异极显著。在溪流级别梯度(1-3级)下,鱼类的物种数和个体数都呈上升的变动趋势,且物种数的变化相对个体数较显著。综合相关分析、逐步多元回归分析与典范相关分析的结果,阊江和青弋江中鱼类物种数的空间变化主要与下游量级相关,而个体数的空间变化主要与水宽相关。因此,阊江和青弋江1-3级浅水溪流中鱼类群落结构的空间分布格局是溪流大小和空间位置的共同作用结果,且溪流大小和空间位置分别决定鱼类的个体数与物种数的空间分布。       

The Importance of Ecoregion Versus Drainage Area on Fish Distributions in the St. Croix River and its Wisconsin Tributaries

Aquatic ecoregions, based on regional landscape features, have been proposed as a model for aquatic resource management. The model assumes the existence of a typical biota associated with a given ecoregion and serves as the basis for biological assessment, reference site designation, and determination of stream potential, based on this biotic assemblage. Contrasting models for predicting stream ecosystem structure focus on the importance of local site conditions, including the regular and predictable changes that occur as a function of area draining to a site. In this study, a classification of 429 stream sites over an area of approximately 20000km² in the St. Croix River basin delineated three major species groups: redhorse/spotfin shiner; brook charr/sculpin; and mixed species. Numerical analyses revealed no relationship between the species communities and ecoregions. In contrast, there was a strong association between the species communities and the area draining to the site. Our study highlights the importance of accommodating the inherent structure associated with site drainage area when imposing a regionally-based ecological classification upon stream ecosystems. This structure is expressed in the systematic changes to the physical habitat that occur with increasing drainage area and are reflected by the species community at the site. Management models that currently incorporate ecoregions in the classification or prediction of stream ecosystem structure would benefit from the inclusion of specific components that incorporate drainage area measurements.now at Environment Protection Authority     

MonitoringAspergillus fumigatus aerosols from a composting facility

The large, outdoor Islip Yard Waste Composting Facility on Long Island, New York was investigated as a source of airborne fungus spores. The Burkard-Hirst volumetric spore trap was used for the first extensive sampling of small mold spores for this application. Samplers were operated continuously from 21 August to 30 November 1992 in the facility and in a suburban community about 540 m from the facility. A control site approximately 10 000 m from the facility was also sampled to establish background levels of fungus spores. The facility site had higher average readings ofAspergillus fumigatus spores than did the community and both were higher than the control.A. fumigatus was the only fungus among 30 categories tracked that differed significantly between the facility and control sites. It was also isolated repeatedly from the compost. Higher average levels ofA. fumigatus were measured in the community when winds blew from the facility, and also during times when the compost was moved or mixed at the facility. No correlation was found between wind direction or work times andA. fumigatus conidia at the control site. The study shows that this compost facility can produce a measurable increase in the number of airborneA. fumigatus conidia both at the edge of the facility and at 540 m downwind. It also demonstrates that the Burkard spore trap can be used for monitoring small, airborne mold spores, but it is a difficult and labor intensive task.     

Short-term responses of phytoplankton to nutrient enrichment and planktivorous fish predation in a temperate South American mesotrophic reservoir

The benthic macroinvertebrate community is an important component of stream diversity, because its members are fundamental connectors among the different trophic levels of running waters. In this study, we assessed alpha and beta diversities of benthic macroinvertebrates in three stream sites and four microhabitats: (i) moss in the air-water interface; (ii) submerged roots of terrestrial plants; (iii) leaf litter deposited in pools; (iv) stones in riffles. We constructed rarefaction curves and compared species richness among microhabitats for each stream site. Additionally, we evaluated which factor, stream site, or microhabitat, was most important in determining variation in assemblage structure, i.e., beta diversity. There was no significant difference among microhabitats in terms of taxa richness evaluated by rarefaction curves. Using partial Constrained Correspondence Analysis (pCCA), we found that microhabitat was most important in determining community composition, accounting for 42.02% of the total variation. Stream sites accounted for 22.27%. In accordance with the pCCA, exploratory multivariate methods (ordination and classification) revealed four distinct groups, corresponding to the four microhabitats, independent of stream sites. Our results indicated that differences among environmental conditions are much more important in the determination of stream assemblage structure than are differences in spatial location. Accordingly, adjacent microhabitats in a single stream site harbor macroinvertebrate assemblages more dissimilar than those found in a single microhabitat at different stream sites. Handling editor: D. Dudgeon     

Typology of macrofaunal assemblages: a tool for the management of running waters in The Netherlands

A survey was carried out at 156 sites, situated in streams in the province of Overijssel (The Netherlands), to describe the macroinvertebrate assemblages and their environments. Fifty-six environmental variables were measured once at each sampling site. The main aim was to describe a typology of stream for this region.Different multivariate analysis techniques (clustering and ordination) were used in combination with ecological information on individual taxa to derive and describe site groups in terms of taxonomic composition and mean environmental conditions. The resulting site groups were termed cenotypes.Eleven cenotypes were distinguished. Differences between cenotypes were attributed to (combinations of) environmental key factors, namely, dimensions (width and depth), morphological (profile shape) and hydraulic stream characteristics, duration of drought and load of organic material.The typology offers a basis to be used for regional stream management and nature conservation. Efforts to improve stream ecosystems should be directed at the physical and hydraulic conditions.Typological studies are needed (especially in semi-natural landscapes) if we are to better understand, manage and conserve freshwater biota.     

Effects of permethrin on aquatic organisms in a freshwater stream in south-central Alaska.

Permethrin (0.5%) was applied to individual Lutz spruce, Picea x lutzii Little, to protect them from attack by spruce beetles, Dendroctonus rufipennis (Kirby). Residue levels were monitored in a freshwater stream above, adjacent to, and below the treatment site at intervals before, during, and after treatment. Maximum residue levels in the stream within the treatment site ranged from 0.05 +/- 0.01 ppb 5 h after treatment to 0.14 +/- 0.03 ppb 8-11 h after treatment, with a decrease to 0.02 +/- 0.01 ppb 14 h after treatment. Levels of permethrin in standing pools near the stream within the treatment site were 0.01 +/- 0.01 ppb. Numbers of drifting aquatic invertebrates increased 2-fold during treatment and 4-fold 3 h after treatment and declined to before spray numbers within 9 h. Terrestrial insects did not appear to respond to treatments because none was found in stream drift samples. Trout fry (Dolly Varden), aquatic insect larvae, and periphyton (attached algae) within and below the treatment site during and after treatment did not show signs of mortality compared with an upstream untreated control site.     

Aquatic insect diversity in a tropical Vietnamese stream in comparison with that in a temperate Korean stream

A comparative investigation on aquatic insect diversity was conducted in a tropical stream in Southeast Asia (the Dak Pri stream in southern Vietnam; stream orders II–V, two sites per stream order) with a reference temperate stream in Northeast Asia (the Gapyeong stream in central Korea) in March 2001 and April 2000, respectively. The numbers of aquatic insect taxa in Dak Pri stream (268 species, mostly undescribed, 230 genera, 91 families, and 9 orders; 110.5 ± 17.1 species per site) were about twice those in Gapyeong stream (133 species, 98 genera, 51 families, and 8 orders; 60.3 ± 8.5 species per site). Coleoptera, Trichoptera, Ephemeroptera, and Diptera were the major aquatic insect orders with high taxonomic richness, and Coleoptera, Odonata, and Hemiptera contributed to the higher degree of aquatic insect diversity in Dak Pri stream. The species diversity indices of Dak Pri stream (4.37 ± 0.19) were higher than those of Gapyeong stream (3.73 ± 0.42), whereas the dominance indices of Dak Pri stream (0.195 ± 0.046) were lower than those of Gapyeong stream (0.346 ± 0.113). Collector-gatherers were predominant in both streams; shredders were more abundant in Dak Pri stream while scrapers were more abundant in Gapyeong stream. Factors affecting the higher degree of aquatic insect diversity in Dak Pri stream are discussed.     

Winter feeding strategies of individually marked herons

The winter feeding behaviour of individually marked herons was studied in an estuarine habitat with adjacent streams in north-east Scotland. Feeding rates in the estuary were highest around low tide, and no feeding took place 3 h before and after low tide. Feeding rates at streams were significantly lower than in the estuary, but were constant throughout the day.Individual herons fed consistently with one of the following strategies: (1) feeding in a stream only: (2) feeding in the estuary only; or (3) switching between stream and estuary. The feeding rate was measured as a basis for a comparison of the benefits of alternative feeding strategies. A comparison between the three feeding strategies showed that herons that switched between estuary and streams achieved a significantly higher food intake than birds that used a stream feeding site only. The timing of arrival on the estuary and departure from the estuary to the streams was consistent with an energy maximization hypothesis. In midwinter, switchers were significantly heavier than non-switchers.     

Variations in stream water uptake by Eucalyptus camaldulensis with differing access to stream water

The stable isotopes ²H and ¹⁸O were used to determine the water sources of Eucalyptus camaldulensis at three sites with varying exposure to stream water, all underlain by moderately saline groundwater. Water uptake patterns were a function of the long-term availability of surface water. Trees with permanent access to a stream used some stream water at all times. However, water from soils or the water table commonly made up 50% of these trees' water. Trees beside an ephemeral stream had access to the stream 40–50% of the time (depending on the level of the stream). No more than 30% of the water they used was stream water when it was available. However, stream water use did not vary greatly whether the trees had access to the stream for 2 weeks or 10 months prior to sampling. Trees at the third site only had access to surface water during a flood. These trees did not change their uptake patterns during 2 months inundation compared with dry times, so were not utilising the low-salinity flood water. Pre-dawn leaf water potentials and leaf ¹³C measurements showed that the trees with permanent access to the stream experienced lower water stress and had lower water use efficiencies than trees at the least frequently flooded site. The trees beside the ephemeral stream appeared to change their water use efficiency in response to the availability of surface water; it was similar to the perennial-stream trees when stream water was available and higher at other times. Despite causing water stress, uptake of soil water and groundwater would be advantageous to E. camaldulensis in this semi-arid area, as it would provide the trees with a supply of nutrients and a reliable source of water. E. camaldulensis at the study site may not be as vulnerable to changes in stream flow and water quality as previously thought.     

A challenge to dam improvement for the protection of both salmon and human livelihood in Shiretoko,Japan’s third Natural Heritage Site

The Shiretoko Peninsula was placed on the World Heritage List in July 2005 as Japan’s third Natural Heritage Site, being valued for its unique ecosystems formed by the interaction between marine and terrestrial environments. Prior to its listing, however, the International Union for Conservation of Nature and Natural Resources requested the development of measures to allow for the free movement of salmonids through the nominated area via artificial in-stream structures. This report introduces a pioneering effort to modify check dams in order to improve ecosystem linkages. The River Construction Working Group has intensively discussed and implemented restoration projects for 3 years, and the results have been monitored after implementation. Of 44 streams within the Shiretoko World Natural Heritage Site, 14 streams have had one or more in-stream structure(s) built. A total of 123 structures, mainly soil conservation dams, are distributed sporadically in these streams. Following assessment, the Working Group concluded that it would be reasonable to modify 31 structures in five streams, including 18 structures that were to be modified before listing. The most suitable design that met local stream conditions was selected, after accounting for salmon passage, adverse impacts on stream environments above and below the construction sites and on fishing grounds, efficiency of construction, and ease of postmodification maintenance. Working in cooperation with the group members and parties concerned, we succeeded in restoring salmonids’ upstream runs and extending their spawning habitat in streams above some of the dams, while keeping the disaster prevention function of the dams intact.     

Environmental factors influencing the regional distribution and local density of a small benthic fish: the stoneloach (<Emphasis Type="Italic">Barbatula barbatula</Emphasis>)

We investigated the relationships between different environmental variables and the spatial distribution patterns of the stoneloach (Barbatula barbatula) at the stream system, the stream site, and the mesohabitat (riffle/pool) scales in south-western France. Stoneloach occurred at 240 sites (out of 554 sampling sites), chiefly close to the source, in areas at low elevation and with weak slopes. Population density at a site was primarily influenced by physical conditions. Stream width was positively related to the probability of presence of stoneloach within the stream system, but negatively related to local density. These results indicate that stoneloaches can occur in a wide range of streams, but they are less abundant in wide rivers, probably because of lower habitat heterogeneity. Slope was negatively correlated to both fish presence at the regional scale and local density, suggesting that stoneloach’s swimming performance were weak under greater erosive forces. These results suggested that the distribution of populations and the density of stoneloach were governed by the suitability of physical habitat. Multi-scale studies of factors influencing a species’distribution allow to integrate patterns observed at different scales, and enhance our understanding of interactions between animals and their environment. The use of few pertinent variables in successful final models could reduce the effort and cost of data collection for water management applications.     

Elevated Soil Arsenic Levels at a Former Crude Oil Storage Facility-Assessment,Remediation, and Possible Sources

Surface and near-surface soil arsenic levels were measured at a former crude oil storage facility within the greater Los Angeles area of Southern California. Arsenic was present in soil within some portions of the site at concentrations defined as being hazardous by both the State of California and the United States Environmental Protection Agency. The elevated soil total arsenic concentrations ranged from about 30 to 2300?mg/kg and generally occurred in, and adjacent to, the former washing and storage tank locations and along piping runs. In contrast, background concentrations of arsenic in soil at the site ranged from less than the analytical method detection limits (0.5?mg/kg) to approximately 8.0?mg/kg. The elevated soil arsenic concentrations are believed to be the result of the use of arsenical corrosion inhibitors within production wells and possibly the use of arsenical biocides in washing and skimmer tanks. Flow lines from production wells within the oil field to the crude oil storage facility contained crude oil and produced (formation) water. Arsenical corrosion inhibitors placed into the oil wells may have flowed with the crude oil/produced-water streams into the washing and skimmer tanks. Over the course of approximately 55 years of operation, tankage and piping leaks at the facility may have contributed to the elevated soil arsenic concentrations encountered at the site. A site-specific cleanup goal of 22?mg/kg total arsenic was established by the regulatory agency with oversight for the site. Remediation of the arsenic-impacted soil was accomplished by excavation and on site treatment using a chemical fixation process. Confirmatory samples collected after the fixation process was completed verified that the treatment reduced the concentrations of arsenic that could by leached from the soil to nonhazardous levels. The treated soil was subsequently transported offsite to an asphalt recycling facility for incorporation into asphalt paving products.