Seasonal and spatial variation in the diet of brown trout (Salmo trutta L.) in the subarctic River Laxá, north-east Iceland

This study examines seasonal and spatial patterns in the diet composition, stomach fullness and condition of a landlocked population of brown trout (2.5–61.3 cm) in the lake-fed River Laxá in NE-Iceland. The stomach contents consisted predominantly of benthic invertebrates, such as blackfly larvae Simulium vittatum (58%), chironomids (24%) and the freshwater snail Radix peregra (7%). The seasonal and spatial patterns of S. vittatum in the stomach contents were consistent with published studies on the life cycle and production of S. vittatum in the River Laxá. Close to the Lake Myvatn outlet (0–16 km), S. vittatum constituted 63% of the stomach content volume, and exhibited two peaks (i.e., generations) in its seasonal contribution to the stomach contents, whereas further downstream (16–35 km) S. vittatum constituted 45% of the volume and showed only clear evidence of one generation. Seasonal fluctuations in S. vittatum availability appear to affect the stomach fullness and the condition factor of the trout, especially close to the lake outlet where the fluctuations are pronounced.     

Genetic variation of Polish endangered Biłgoraj horses and two common horse breeds in microsatellite loci

Genetic variation of endangered Bi?goraj horses and two common Polish horse breeds was compared with the use of 12 microsatellite loci (AHT4, AHT5, ASB2, HMS2, HMS3, HMS6, HMS7, HTG4, HTG6, HTG7, HTG10, VHL20). Lower allelic diversity was detected in all investigated populations in comparison to other studies. Large differences in the frequencies of microsatellite alleles between Bi?goraj horses and two other horse breeds were discovered. In all polymorphic loci all investigated breeds were in the Hardy-Weinberg equilibrium. Mean Fis values and the results of a test for the presence of a recent bottleneck were non-significant in all studied populations. Comparable values of observed and expected gene diversity indicate no substantial loss of genetic variation in the Bi?goraj population and two other breeds. The lowest variability observed in the investigated group of Thoroughbred horses was confirmed. About 10% of genetic variation are explained by differences between breeds. Values of pairwise Fst and two measures of genetic distance demonstrated that Bi?goraj horses are distantly related to both common horse breeds.     

Isolation and characterization of polymorphic microsatellite loci in Castanopsis chinensis Hance (Fagaceae)

Twelve novel microsatellite loci were isolated and characterized from enriched genomic libraries of Castanopsis chinensis. Four previously reported microsatellites from Castanopsis cuspidata were cross-amplified in C. chinensis. Forty-two sample trees from a wild population were tested for polymorphism using a set of the 16 polymorphic microsatellites. The average allele number of these microsatellites was 4.6 per locus, ranging from 2 to 7. The ranges of observed and expected heterozygosity were 0.262–1.000 and 0.238–0.818, respectively. Significant deviations from Hardy–Weinberg equilibrium were detected at five loci and no linkage disequilibrium was observed.     

Behavioural responses of brown trout, Salmo trutta, juveniles in concentration gradients of pH and Al – a laboratory study

Behavioural responses including avoidance behaviour of brown trout, Salmo trutta, juveniles were tested in waters of different pH (4.0, 4.5, 5.0, 5.5, 7.0) without Al additions, and with and without Al (< 10, 70 and 190 g labile Al l^-1) at pH 5.0. Single fish were tested in a tank where control (pH 7.0, < 10 g labile Al l^-1) and the various acid water qualities could be separated, and where the fish could swim freely. Each test lasted for one hour and included a five-min acclimation period in control water, a 15-min mixing period, and an additional 40-min test period after the chemical gradient was established. When Al was added at pH 5.0, the fish showed significant avoidance at the highest Al concentration, and spent on average 32% of the time in the acid, Al-rich side versus 68% in the control side. This avoidance response increased with time during the test period. Brown trout juveniles showed significant attraction to low pH water at pH 4.0 (p < 0.05), pH 4.5 (p < 0.001) and pH 5.0 (p < 0.05) (67, 74 and 68% of the time spent in the acid side, respectively), whereas no attraction/avoidance was demonstrated at pH 5.5. The lack of avoidance in the low pH treatments was associated with reduced activity in the acid side, and may have been caused by a slight elevation of free CO₂ within the test apparatus.     

Characterization of eight microsatellite loci in Sea Otter, Enhydra lutris, and cross-species amplification in other Mustelidae

Herein we describe the development of eight microsatellite markers for the northern sea otter, Enhydra lutris kenyoni. A total of 45 primer pairs were developed and screened from enriched AAAT, CATC, TACA, and TAGA libraries derived from genomic DNA of E. lutris kenyoni. Of these, eight amplified successfully. The average observed heterozygosity, expected heterozygosity, and number of alleles per locus was 0.506, 0.537, and 3.4, respectively. These eight loci were tested across three additional genra; Vulpes lagopus, Martes americana, and Mustela nivalis. Based on the success of our results these loci will be useful for future studies across all sub-species of E. lutris.     

Polymorphic microsatellite loci in the Chinese pond turtle (Chinemys reevesii)

Eight novel polymorphic microsatellite loci developed from a microsatellite enriched genomic library, are presented for the Chinese pond turtle (Chinemys reevesii). We screened 30 individuals from three populations and detected high levels of polymorphism for all eight loci with the number of alleles/locus ranging from 7 to 17 (average = 10.88). The values of expected and observed heterozygosities ranged from 0.703 to 0.920 and 0.321 to 0.966, respectively. These highly variable loci will provide a powerful molecular toolkit for studies of population structure, gene flow, and paternity assignment.     

Body Size, Diet and Growth of Landlocked Brown Trout, Salmo trutta, in the Subarctic River Laxá, North-East Iceland

Studies on diet preferences of stream-dwelling salmonids have mostly been limited to a relatively small range in body size. This study examined the influence of salmonid body size on prey size and diet composition, and its consequences for growth, in landlocked stream-resident brown trout, Salmo trutta (2.5–61.3cm) in the Laxá River, N-E Iceland. The most common prey of the 1622 trout sampled, were blackflies, Simulium vittatum, chironomid midges and the freshwater snail, Lymnaea peregra, which represented 56.3%, 21.8%, 10.8% of the stomach content volume, respectively. In general, the Laxá trout showed a consistent, but moderate, shift towards larger prey with increased body size. The relatively stable growth and the large body size attained were probably due to the high production of small benthic invertebrates and only secondarily to the ontogenetic shift towards larger prey.     

Woody debris and terrestrial invertebrates – effects on prey resources for brown trout (Salmo trutta) in a boreal stream

Intensive forestry and other activities that alter riparian vegetation may disrupt the connectivity and the flux of energy between terrestrial and aquatic habitats and have large effects on biota, especially in small streams. We manipulated the amount of in-stream wood and the flux of terrestrial invertebrate subsidies to determine how these factors affected potential food resources for drift-feeding brown trout (Salmo trutta ) in a boreal Swedish forest stream. Specifically, we followed the effects on the abundance of aquatic and terrestrial invertebrate fauna from June to August 2007. The treatments were 1) addition of wood, unmanipulated terrestrial invertebrate inputs, 2) reduction of terrestrial invertebrate inputs (using canopy covers), no addition of wood, 3) unmanipulated ambient conditions, 4) simultaneous addition of wood and reduction of terrestrial invertebrate inputs. Added wood resulted in greater biomass of aquatic invertebrate biomass, and both input and drift of terrestrial invertebrates were reduced by canopy covers. In terms of total potential prey biomass, the addition of wood with ambient levels of terrestrial invertebrate inputs had the highest standing crop of benthic, wood-living and terrestrial invertebrates combined, whereas the treatment with reduced terrestrial input and no wood added had the lowest standing crop. Our study indicates that forest practices that both reduce the recruitment of wood and the input of terrestrial invertebrates to small streams have negative effects on prey availability for drift-feeding brown trout. The positive effects of wood addition on biomass of aquatic macroinvertebrates may partly compensate for the negative effects of reduced terrestrial invertebrate subsidies.     

A 14-year study of habitat use and diet of brown trout (Salmo trutta) and Arctic charr (Salvelinus alpinus) in Lake Atnsjøen, a subalpine Norwegian lake

To reveal the mechanisms of sedimental H₂S accumulation, annual investigations on sedimental environments were conducted in two temperate estuarine lagoons. The lagoons, Gamo and Idoura (Japan), have similar shapes, locations, and topographical properties but different degrees of H₂S accumulation. Water stagnation causes a high phytoplankton biomass (Chl. a; 26–52 g l^–1) in the inner Gamo Lagoon. Gamo Lagoon sediment was characterized by high bounded sulfides (bounded Smainly FeS) and H₂S contents, and low C/N ratios (mean = 10.4) and iron (reactive Fe²⁺ and total Fe) contents. H₂S was not detected in Idoura Lagoon where phytoplankton biomass was much lower (Chl. a; 0.6–4 g l^–1). Idoura Lagoon sediment had high C/N ratios (mean=17.9) and high iron contents. The C/N ratio difference implies that organic matter in Gamo Lagoon originates mainly from more decomposable phytoplankton, while organic matter in Idoura Lagoon derives mainly from terrestrial vascular plants with lower decomposability. The excess loading of phytoplanktonic detritus in Gamo accelerates sedimentary microbial activity, including sulfate reduction (i.e., H₂S production). High Fe²⁺and low bounded S contents in Idoura sediment indicate a high chemical buffering capacity toward H₂S. In contrast, almost all Fe²⁺ in Gamo Lagoon had already reacted with H₂S as FeS. H₂S accumulation in Gamo Lagoon is caused by low sedimentary chemical buffering capacity toward H₂S, as well as higher microbial H₂S production, caused by the excess loading of phytoplanktonic detritus.     

Genetic variation and structure in natural and reintroduced populations of the endangered legume,Pyne’s ground plum (Astragalus bibullatus)

Conservation Genetics - Rare species with limited geographic distributions and small census populations are particularly susceptible to genetic drift and inbreeding. Assessing genetic variation...     

Isolation and characterization of microsatellite loci in Peganum harmala (Peganaceae), an important resist-drought and medicinal plant

Peganum harmala is a herb grows spontaneously in arid and rocky areas. From ancient time, it has been claimed to be an important medicinal plant in rough environment. In this study, we developed 12 microsatellite loci from P. harmala by the combining biotin capture method for the first time. A total of 31 microsatellite sequences were recovered through screening the library and 12 of them are polymorphic. The number of alleles per locus in 36 sampled individuals ranged from 3 to 8, expected heterozygosity and observed heterozygosity ranged from 0.1381 to 0.6821 and from 0.3573 to 0.8739, respectively. In addition, all markers have been crossly checked in the other congeneric species. These microsatellite markers would provide a useful tool for investigating the genetic diversity and study the population genetic structure in detail.     

Isolation and characterization of 14 polymorphic microsatellite loci in the ark shell Scapharca subcrenata (Bivalvia: Arcidae)

The ark shell Scapharca subcrenata is an important fishery resource, but has been suffering from severe population decline due to the deterioration of the coastal environment and over-exploitation. To investigate the genetic variation and structure among populations of S. subcrenata, 14 polymorphic microsatellite loci were developed. The number of alleles per polymorphic locus ranged from 11 to 29 and the observed and expected heterozygosity varied from 0.400 to 0.923 and from 0.705 to 0.965, respectively. These microsatellites will help advance the investigation of the genetic population structure and genetic diversity in this species.     

Stocking impact and migration pattern in an anadromous brown trout (Salmo trutta) complex: where have all the stocked spawning sea trout gone?

We examined polymorphism at seven microsatellite loci among sea trout (Salmo trutta) (n = 846) collected from three areas in the Limfjord (Denmark). We then assessed their potential population source by comparing, using a mixed stock analysis (MSA) Bayesian framework, their genetic composition to that of brown trout collected from 32 tributaries pooled into nine geographical regions (n = 3801) and two hatcheries (n = 222) used for stocking. For each of the three regional sea trout groups (western, central and eastern Limfjord, n = 91, n = 426, n = 329, respectively), MSA was conducted with (i) all individuals in the group, (ii) with the subset of spawning sea trout only and (iii) with the subset of foraging, nonspawning individuals only, a subset that consisted primarily of sea trout caught during their first year at sea. For all three regional sea trout groups, a higher proportion of individuals (regardless of whether they were foraging or spawning) appear to have originated from the rivers that drain locally, than from the rivers that drain in other parts of the Limfjord. This suggests (1) that sea trout, at least during their first year at sea, undertake limited migrations within the Limfjord system and (2) that sea trout on their spawning run were caught close to their natal rivers. The proportion of sea trout of hatchery origin varied widely among all three Limfjord areas and broadly reflected regional stocking histories, with high proportions of sea trout of domestic origin in the east (39.3%), where stocking with domestic trout was practised intensely at the time of sampling, and in the west (57.2%), where a programme of coastal stocking of post smolts took place over several years in the early 1990s. In contrast, in the central Limfjord, where stocking with domestic trout was largely abandoned in the early 1990s, the proportion of sea trout of domestic origin was only 8.5%. Interestingly, for all three regional sea trout groups, virtually no sea trout of hatchery origin were found among the spawning individuals, which were on average larger than the nonspawning sea trout. These results suggest that stocked domestic brown trout that become anadromous experience high mortality at sea and are therefore largely absent among the larger, spawning individuals. We conclude that sea trout of domestic origin exhibit much reduced ability to reproduce and are unlikely to contribute significantly to the local gene pool largely because of a relatively high mortality at sea before the onset of maturity.     

Characterization of microsatellite loci from the Malagasy endemic,Tina striata Radlk. (Sapindaceae)

We isolated and characterized 12 polymorphic microsatellite loci in the Malagasy endemic, Tina striata Radlk. (Sapindaceae). The number of alleles per locus ranged from 2 to 6 (N = 28 individuals). Polymorphic information content ranged from 0.132 to 0.767 and observed heterozygosity from 0.154 to 0.800. These markers will be valuable in estimating outcrossing rates and genetic variation in populations of T. striata, and aid in the conservation of populations of T. striata and other closely related species in the Malagasy Sapindaceae.     

Isolation and characterization of microsatellite loci in Paspalum notatum Flüggé (Poaceae)

Paspalum notatum is a forage grass recognized as one of the major constituents of the native grasslands in the New World. The knowledge of the genetic diversity and structure of P. notatum populations is fundamental for the conservation and germplasm management of this species. About 11 microsatellite markers were isolated from P. notatum and characterized in 25 accessions. The average number of alleles per locus was 7.9 and the PIC ranged from 0.36 to 0.89. The data demonstrated that the most of markers are suitable to detect polymorphism and to study the genetic diversity in the P. notatum species. Moreover, the transferability of these microsatellite were tested on other three congeneric species.     

Isolation and characterization of polymorphic microsatellite loci from a dinucleotide-enriched genomic library of spotted maigre (Nibea albiflora)

In the present study, we reported 13 polymorphic microsatellite loci isolated from a dinucleotide-enriched genomic library of Nibea albiflora. The number of alleles, observed and expected heterozygosity per locus in 44 individuals ranged from 2 to 13, from 0.0909 to 0.9773 and from 0.0886 to 0.9073, respectively. Three loci significantly deviated from Hardy–Weinberg equilibrium after Bonferroni correction. Analysis of linkage disequilibrium showed non-significant among the two pairs of loci. As a result, 13 microsatellite loci probably located on different chromosome pairs and these polymorphic microsatellite loci should provide sufficient level of genetic diversity to investigate the fine-scale population structure and evaluate the breeding strategy in Nibea albiflora. Shichao Xing, Changwei Shao contributed equally to this work.     

Allelic diversity at class II DRB1 and DQB loci of the pig MHC (SLA)

 The loci encoding the β chain of the pig major histocompatibility complex (MHC) class II antigens, SLA-DR and -DQ, have been known to exhibit a remarkable degree of allelic polymorphism. Here, to understand the generation of SLA class II polymorphism, 25 SLA-DRB1 and 24 SLA-DQB genes including newly identified 12 SLA-DRB1 and 7 SLA-DQB genes obtained from miniature pigs were analyzed based on the nucleotide and deduced amino acid sequences. Most of the allelic diversity was attributed to the variable sequences which encode a β₁ domain consisting of a β-pleated sheet followed by an α helix. In the β₁ domain coding region, there were four GC-rich sequences, which have been considered to involve the intra-exon sequence exchange also in other gene evolutions. The first and second GC-rich sequences were χ-like sequences, which have been shown to be a putative recombination signal, and were stably conserved among SLA-DRB1 and DQB genes. These χ-like sequences identified in SLA-DRB1 and SLA-DQB were found to encode the first turning point of the β-pleated sheet and the boundary between the β-pleated sheet and the α helix. Analysis of clustered sequence variation also suggested intra-exon gene conversions in which the χ-like sequences act as putative breakpoints. In addition to point mutations and selection mechanism, intra-exon gene conversions must be an important mechanism in the generation of allelic polymorphism at the SLA-DRB1 and SLA-DQB. Received: 3 December 1998 / Revised: 29 June 1999     

Genetic variation at storage protein-coding loci of common wheat (cv ‘Chinese Spring’) induced by nitrosoethylurea and by the cultivation of immature embryos in vitro

Electrophoretic patterns of seed storage proteins, the high-molecular-weight glutenins and gliadins, were studied in 468 plants of the common wheat cultivar Chinese Spring regenerated from callus culture of immature embryos, in 115 plants grown from seeds treated with nitrosoethylurea and in 260 control plants. From 5 to 21 single grains were analysed from each plant. In these three groups, the frequency of inherited mutations causing the loss of all proteins controlled by a locus (null-mutations, probably caused by a chromosomal deficiency) was 0.69%, 2.07%, and 0.05% per locus (the differences were statistically significant), respectively, while that of mutations causing the loss of a single protein band was 0.11%, 0.33%, and 0.05%, respectively. The loss of all of the gliadins controlled by Gli-B1 or GH-B2 (mutations were probably caused by a deletion of satellites of the corresponding chromosomes), was significantly higher than the loss of gliadins controlled by genomes A and D. Gene mutations altering the electrophoretic mobility of a single protein band in the pattern were found only in the second group of plants (0.44%). Therefore, chemical mutagenesis which produced not only more mutations than cultivation of immature wheat embryos in vitro, but also a higher ratio of mutations that altered DNA sequences, can be considered as an easier and comparatively more promising way for obtaining new improved variants of loci controlling biochemical characteristics in wheat. Somaclonal variation, on the other hand, was probably mainly caused by chromosomal abnormalities and could therefore hardly be considered as a useful tool in wheat breeding.     

Has stocking contributed to an increase in the rod catch of anadromous trout (Salmo trutta L.) in the Shetland Islands,UK?

The stocking of hatchery-origin fish into rivers and lakes has long been used in fisheries management to try to enhance catches, especially for trout and salmon species. Frequently, however, the long-term impacts of stocking programmes have not been evaluated. In this study, the authors investigate the contribution of a stocking programme undertaken to support the rod catch of sea trout in the Shetland Islands, UK. Once a highly productive recreational fishery, Shetland sea trout catches crashed in the mid-1990s. Around the time that stocking began, increases in rod catches were also reported, with advocates of the stocking highlighting the apparent success of the programme. Using a suite of genetic markers (microsatellites), this study explores the contribution of the stocking programme to the Shetland sea trout population. The authors found that the domesticated broodstock and wild spawned brown trout from seven streams were genetically distinct. Despite extensive stocking, wild spawned brown trout dominated, even in those streams with a long history of supplementation. The majority of sea trout caught and analysed were of wild origin – only a single individual was of pure stocked origin, with a small number of fish being of wild × stocked origins. This study suggests that stocking with a domesticated strain of brown trout has made only a very limited contribution to the Shetland Islands rod catch, and that the revival of sea trout numbers appears to be driven almost exclusively by recovery of trout spawned in the wild.