Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance

Expression of HpaG_Xoo, a bacterial type-III effector, in transgenic plants induces disease resistance. Resistance also can be elicited by biocontrol bacteria. In both cases, plant growth is often promoted. Here we address whether biocontrol bacteria and HpaG_Xoo can act together to provide better results in crop improvement. We studied effects ofPseudomonas cepacia on the rice variety R109 and the hpaG_Xoo-expressing rice line HER1. Compared to R109, HER1 showed increased growth, grain yield, and defense responses toward diseases and salinity stress. Colonization of roots byP. cepacia caused 20% and 13% increase, in contrast to controls, in root growth of R109 and HER1. Growth of leaves and stems also increased in R109 but that of HER 1 was inhibited. WhenP. cepacia colonization was subsequent to plant inoculation withRhizoctonia solani, a pathogen that causes sheath blight, the disease was less severe than controls in both R109 and HER1; HER1, nevertheless, was more resistant, suggesting thatP.cepacia and HpaG_Xoo cooperate in inducing disease resistance. Several genes that critically regulate growth and defense behaved differentially in HER1 and R109 while responding toP. cepacia. In R109 leaves, theOsARF1 gene, which regulates plant growth, was expressed in consistence with growth promotion byP. cepacia. Inversely,OsARF1 expression was coincident with inhibition in growth of HER1 leaves. In both plants, the expression ofOsEXP1, which encodes an expansin protein involved in plant growth, was concomitant with growth promotion in leaves instead of roots, in response toP. cepacia. We also studiedOsMAPK, a gene that encodes a mitogen-activated protein kinase and controls defense responses toward salinity and infection by pathogens in rice. In response toP. cepacia, an early expression ofOsMAPK was coincident with R109 resistance to the disease, while HER1 expressed the gene similarly whetherP. cepacia was present or not. Evidently,P. cepacia and G_Xoo-gene mediated resistance may act differently in rice growth and resistance. Whereas combinative effectsof P. cepacia and HpaG_Xoo in disease resistance have a great potential in agricultural use, it is interesting to study mechanisms that underlie interactions involving biocontrol bacteria, type-III effectors and pathogens. These authors contributed equally to this paper.     

Effects of a biocontrol bacterium on growth and defence of transgenic rice plants expressing a bacterial type-III effector

Expression of HpaG_xoo, a bacterial type-III effector protein, in transgenic plants induces disease resistance. Resistance also can be elicited by biocontrol bacteria. We studied effects of the biocontrolBacillus subtilis strain B-916 on the rice variety R109 and the thehpaG _xoo -expressing rice line HER1. Colonisation of roots by B-916 caused 12.5±1.3% and 0.5±0.05% increases, in contrast to controls, in root growth of R109 and HER1. Growth of R109 leaves and stems was increased by 0.5±0.05% but that of HER1 was inhibited. When B-916 colonisation was subsequent to plant inoculation withRhizoctonia solani, a pathogen that causes sheath blight, the disease was less severe than controls in both R109 and HER1; HER1, nevertheless, was more resistant, suggesting that B-916 and HpaG_xoo cooperate in inducing disease resistance. In R109 roots, theOsARF1 gene, which regulates plant growth, was expressed in consistence with growth promotion by B-916. Inversely, the depression ofOsARF1 expression was coincident with inhibition in growth of HER1 leaves and stems. In both plants, the expression ofOsEXP1, which encodes an expansin protein involved in plant growth, was concomitant with growth promotion in leaves and roots responding to B-916. We also studiedOsMAPK5b encoding a mitogen-activated protein kinase involved in multiple defence responses in rice. In response to B-916, early expression ofOsMAPK5b was coincident with R109 resistance to the disease, while HER1 expressed the gene similarly whether B-916 was present or not. Evidently, B916 and HER1 interact differently in rice growth and resistance. The combinative efffects should stimulate agricultural use and furthestudies on mechanisms that underlie the interaction.     

Plant defense approach of Bacillus subtilis (BERA 71) against Macrophomina phaseolina (Tassi) Goid in mung bean

This study was aimed to elucidate the mitigation mechanism of an endophytic bacterium, Bacillus subtilis (BERA 71) against Macrophomina phaseolina (Tassi) Goid disease in mung bean. M. phaseolina reduced the plant growth by inducing disease, hydrogen peroxide (H₂O₂) and lipid peroxidation. The inoculation of B. subtilis to diseased plants increased chlorophyll, ascorbic acids, and superoxide dismutase, catalase, peroxidase, ascorbate peroxidase and glutathione reductase activities, and while inhibited H₂O₂ and lipid peroxidation for enhancing plant growth. In addition, B. subtilis association in plants mitigated the M. phaseolina infection due to increase of indole acetic acids and indole butyric acid, and also a decrease of abscisic acid. However, the nutrients (N, K, Ca, Mg, Zn, Cu, Mn and Fe) were increased, except Na in M. phaseolina diseased plants treated with B. subtilis. The result of this study suggests that B. subtilis interaction with plants can modulate the metabolism of pigments, hormones, antioxidants and nutrients against M. phaseolina to induce disease resistance in mung bean.     

Effects of colonization of a bacterial endophyte,Azospirillum sp. B510, on disease resistance in tomato

A plant growth-promoting bacteria, Azospirillum sp. B510, isolated from rice, can enhance growth and yield and induce disease resistance against various types of diseases in rice. Because little is known about the interaction between other plant species and this strain, we have investigated the effect of its colonization on disease resistance in tomato plants. Treatment with this strain by soil-drenching method established endophytic colonization in root tissues in tomato plant. The endophytic colonization with this strain-induced disease resistance in tomato plant against bacterial leaf spot caused by Pseudomonas syringae pv. tomato and gray mold caused by Botrytis cinerea. In Azospirillum-treated plants, neither the accumulation of SA nor the expression of defense-related genes was observed. These indicate that endophytic colonization with Azospirillum sp. B510 is able to activate the innate immune system also in tomato, which does not seem to be systemic acquired resistance.     

Rapid evolution of promoters for the plastome gene <Emphasis Type="Italic">ndhF</Emphasis> in flowering plants

Plastome is thought to be a very conservative part of plant genome but little is known about the evolution of plastome promoters. It was previously shown that one light-regulated promoter (LRPpsbD) is highly conserved in different flowering plant species and in black pine. We have undertaken search and demonstrated that gene ndhF is located in a plastome region that rarely underwent substantial rearrangements in terrestrial plants. However, alignment of sequences upstream ndhF suggests that promoters of this gene underwent comparatively rapid evolution in flowering plants. Probably, the ancestor of two basal Magnoliophyta branches (magnoliids and eudicotyledons) had the promoter P_A-ndhF, which was substituted with other promoters—P_B-ndhF and P_C-ndhF—in some phylogenetic lineages of dicots. We failed to reveal conservative sequences with potential promoters of −10/−35 type upstream ndhF genes of monocotyledonous plants, including nine representatives of the grass family (Poaceae). Multiple alignments of sequences from related taxa showed that the predicted ndhF promoters (A–C) underwent frequent mutations and these mutations are not only nucleotide substitutions but also small insertions and deletions. Thus, we can assume that at least some plastome promoters evolve rapidly.     

Diversification of Bacillus subtilis during experimental evolution on Arabidopsis thaliana and the complementarity in root colonization of evolved subpopulations

The soil bacterium Bacillus subtilis is known to suppress pathogens as well as promote plant growth. However, in order to fully exploit the potential as natural fertilizer, we need a better understanding of the interactions between B. subtilis and plants. Here, B. subtilis was examined for root colonization through experimental evolution on Arabidopsis thaliana. The populations evolved rapidly, improved in root colonization and diversified into three distinct morphotypes. In order to better understand the adaptation that had taken place, single evolved isolates from the final transfer were randomly selected for further characterization, revealing changes in growth and pellicle formation in medium supplemented with plant polysaccharides. Intriguingly, certain evolved isolates showed improved root colonization only on the plant species they evolved on, but not on another plant species, namely tomato, suggesting A. thaliana specific adaption paths. Finally, the mix performed better than the sum of its constituents in monoculture, which was demonstrated to be caused by complementarity effects. Our results suggest that genetic diversification occurs in an ecological relevant setting on plant roots and proves to be a stable strategy for root colonization.     

Carotenoid production in <Emphasis Type="Italic">Bacillus subtilis</Emphasis> achieved by metabolic engineering

The carotenoid synthetic genes, crtM and crtN, derived from Staphylococcus aureus, were introduced into B. subtilis, resulting in yellow pigmentation. Absorption maxima of pigments and MALDI-TOF mass spectrometry demonstrated that the pigmented strain accumulated two C₃₀ carotenoids, 4,4′-diapolycopene and 4,4′-diaponeurosporene. A survival test using H₂O₂ revealed that the pigmented strain was more resistant to oxidative stress than the strain harboring an empty-vector. These findings indicate that B. subtilis can produce carotenoids, and the strain accumulating the carotenoids, CarotenoBacillus, will become a basal host for production of C₃₀ carotenoids and evaluation of their antioxidative effects.     

Ammonium Toxicity in Bacteria

Although an excellent nitrogen source for most bacteria, ammonium was—in analogy to plant and animal systems—assumed be detrimental to bacteria when present in high concentrations. In this study, we examined the effect of molar ammonium concentrations on different model bacteria, namely, Corynebacterium glutamicum, Escherichia coli, and Bacillus subtilis. The studied bacteria are highly resistant to ammonium. When growth was impaired upon addition of molar (NH₄)₂SO₄ concentrations, this was not caused by an ammonium-specific effect but was due to an enhanced osmolarity or increased ionic strength of the medium. Therefore, it was concluded that ammonium is not detrimental to C. glutamicum and other bacteria even when present in molar concentrations.     

Assessment of inheritance pattern and agronomic performance of transgenic rapeseed having harpin<Subscript>Xooc</Subscript>-encoding <Emphasis Type="Italic">hrf2</Emphasis> Gene

hrf2 gene is a member of the harpin-encoding gene family of rice-pathogenic bacterium Xanthomonas oryzae pv. oryzicola. In our previous studies, we observed that harpin_Xooc could elicit hypersensitive cell death in non-host plants, induce disease and insect resistance in plants, and enhance plant growth. In this study, the rapeseed cultivar, Yangyou 4, was genetically engineered via Agrobacterium-mediated transformation to express the hrf2 gene. Polymerase chain reaction (PCR) and southern blot analyses of T₁ generation of transgenic rapeseed revealed stable integration and expression of the inserted gene hrf2. In addition, the resistance to Sclerotinia sclerotiorum was greatly enhanced. A comparison between agronomic characters of transgenic and control lines displayed significant differences in terms of plant height, stem width, number of pods per plant, number of seeds per pod, 1,000-seed weight, and seed yield per plant. Among lines with resistance to S. sclerotiorum, T₁1 had improved agronomic traits compared with controls with a 22.7% seed yield increase. These results suggest that the introduction of the hrf2 gene into rapeseed can be an effective strategy for enhancing resistance to S. sclerotiorum.     

About the action of metabolites of plant growth-promoting rhizobacteria Bacillus subtilis on plant salt tolerance (I)

To find out the mode of plant tolerance enhancement against salinity by plant growth-promoting rhizobacteria Bacillus subtilis, metabolites of strains FZB24 and FZB41 were studied in a test system with tomatoes under the influence of high salinity. The culture filtrate (CF) from the fermentative transitional phase, containing the whole range of produced metabolites by B. subtilis, showed to a certain extent tolerance-increasing action at dilution of 0.1% in the test plants with the parameters length, fresh mass and dry mass of shoots and roots as well as leaf area after 7-day treatment and subsequent plant cultivation under high salt stress. Afterwards, the CF was fractionated with adsorber resin and high performance liquid chromatography, and these fractions, as well as fractions from a CF after 19-h fermentation, were also tested with axenic-cultivated tomato seedlings. Fractions with different proteins and peptides, produced by B. subtilis, showed partly activities depending on concentration with regard to plant growth stimulation, including tolerance enhancement against salt stress. Subsequently, also an extract from B. subtilis culture with special concentrated peptides was examined in the axenic plant test system and showed similar activity depending on concentration. The observed effect of the bacterial metabolites is discussed as one part of the mechanism for plant growth stimulation and at the same time salt tolerance, increasing action of the rhizobacterium by its root colonization and interaction with the plant metabolism.     

Characterization of a multifunctional feather-degrading <Emphasis Type="Italic">Bacillus subtilis</Emphasis> isolated from forest soil

In this study, we isolated and characterized a novel feather-degrading bacterium that shows keratinolytic, antifungal and plant growth-promoting activities. A bacterium S8 was isolated from forest soil and confirmed to belong to Bacillus subtilis by BIOLOG system and 16S rRNA gene analysis. The improved culture conditions for the production of keratinolytic protease were 0.1% (w/v) sorbitol, 0.3% (w/v) KNO₃, 0.1% (w/v) K₂HPO₄, 0.06% (w/v) KH₂PO₄ and 0.04% (w/v) MgCl₂·6H₂O (pH 8.0 and 30°C), respectively. In the improved medium containing 0.1% (w/v) feather, keratinolytic protease production was around 53.3 ± 0.3 U/ml at 4 day; this value was 10-fold higher than the yield in the basal feather medium (5.3 ± 0.1 U/ml). After cultivation for 5 days in the improved medium, intact feather was completely degraded. Feather degradation resulted in free –SH group, soluble protein and amino acids production. The concentration of free –SH group in the culture medium was 15.5 ± 0.2 μM at 4 days. Nineteen amino acids including all essential amino acids were produced in the culture medium; the concentration of total amino acid produced was 3360.4 μM. Proline (2809.9 μM), histidine (371.3 μM) and phenylalanine (172.0 μM) were the major amino acids released in the culture medium. B. subtilis S8 showed the properties related to plant growth promotion: hydrolytic enzymes, ammonification, indoleacetic acid (IAA), phosphate solubilization, and broad-spectrum antimicrobial activity. Interestingly, the strain S8 grown in the improved medium produced IAA and antifungal activity, indicating simultaneous production of keratinolytic and antifungal activities and IAA by B. subtilis S8. These results suggest that B. subtilis S8 could be not only used to improve the nutritional value of feather wastes but also is useful in situ biodegradation of feather wastes. Furthermore, it could also be a potential biofertilizer or biocontrol agent applicable to crop plant soil.     

Evaluation of Argemone mexicana for Control of Root-Infecting Fungi in Tomato

Argemone mexicana L. (Papaveraceae), a tropical annual weed, is known to be phytotoxic to many crop species. This study was designed to examine the possible impact of A. mexicana on root‐infecting fungi, changes in fungal community structure and the growth of tomato. A. mexicana decaying shoots in soil provided a marked decrease in the infectivity of Fusarium solani and Rhizoctonia solani but Macrophomina phaseolina remained unaffected. Plant height and shoot growth of tomato plants increased markedly though high concentration of A. mexicana (5% w/w) was deleterious to tomato plants. General species diversity of soil fungal communities increased in the amended soils over the controls and greater increase in diversity occurred at higher concentrations of decaying A. mexicana. Likewise, equitability and richness components of diversity increased in treatments compared to controls but declined with increasing sampling period. Aspergillus nidulans, Cephaliophora irregularis, Drechslera halodes, Paecilomyces lilacinus and Trichoderma viride were isolated exclusively from the amended soils. Aqueous extract of A. mexicana when applied in soil greatly suppressed all three of the above root‐infecting fungi, and at lower concentration actually enhanced plant growth. The influence of different levels of N‐fertilization with NH₄NO₃ on the modification of the effect of decaying A. mexicana on root‐infecting fungi was also investigated. N‐fertilization to some extent alleviated the phytotoxicity to tomato plants while suppressing the root‐infecting fungi. A. mexicana in conjunction with Pseudomonas aeruginosa, a plant growth‐promoting rhizobacterium, significantly suppressed root‐infecting fungi with concomitant increase in plant growth. Whereas P. aeruginosa was reisolated from the rhizosphere and inner root tissues of tomato, its population slightly declined in the amended soil but not to an extent that could reduce the biocontrol and growth promoting potential of the bacterium.     

The molecular bases of plant resistance and defense responses to aphid feeding: current status

Plant genes participating in the recognition of aphid herbivory in concert with plant genes involved in defense against herbivores mediate plant resistance to aphids. Several such genes involved in plant disease and nematode resistance have been characterized in detail, but their existence has only recently begun to be determined for arthropod resistance. Hundreds of different genes are typically involved and the disruption of plant cell wall tissues during aphid feeding has been shown to induce defense responses in Arabidopsis, Triticum, Sorghum, and Nicotiana species. Mi‐1.2, a tomato gene for resistance to the potato aphid, Macrosiphum euphorbiae (Thomas), is a member of the nucleotide‐binding site and leucine‐rich region Class II family of disease, nematode, and arthropod resistance genes. Recent studies into the differential expression of Pto‐ and Pti1‐like kinase genes in wheat plants resistant to the Russian wheat aphid, Diuraphis noxia (Mordvilko), provide evidence of the involvement of the Pto class of resistance genes in arthropod resistance. An analysis of available data suggests that aphid feeding may trigger multiple signaling pathways in plants. Early signaling includes gene‐for‐gene recognition and defense signaling in aphid‐resistant plants, and recognition of aphid‐inflicted cell damage in both resistant and susceptible plants. Furthermore, signaling is mediated by several compounds, including jasmonic acid, salicylic acid, ethylene, abscisic acid, giberellic acid, nitric oxide, and auxin. These signals lead to the development of direct chemical defenses against aphids and general stress‐related responses that are well characterized for a number of abiotic and biotic stresses. In spite of major plant taxonomic differences, similarities exist in the types of plant genes expressed in response to feeding by different species of aphids. However, numerous differences in plant signaling and defense responses unique to specific aphid–plant interactions have been identified and warrant further investigation.     

Exploring ComQXPA quorum‐sensing diversity and biocontrol potential of Bacillus spp. isolates from tomato rhizoplane

Bacillus subtilis is a widespread and diverse bacterium t exhibits a remarkable intraspecific diversity of the ComQXPA quorum‐sensing (QS) system. This manifests in the existence of distinct communication groups (pherotypes) that can efficiently communicate within a group, but not between groups. Similar QS diversity was also found in other bacterial species, and its ecological and evolutionary meaning is still being explored. Here we further address the ComQXPA QS diversity among isolates from the tomato rhizoplane, a natural habitat of B. subtilis, where these bacteria likely exist in their vegetative form. Because this QS system regulates production of anti‐pathogenic and biofilm‐inducing substances such as surfactins, knowledge on cell–cell communication of this bacterium within rhizoplane is also important from the biocontrol perspective. We confirm the presence of pherotype diversity within B. subtilis strains isolated from a rhizoplane of a single plant. We also show that B. subtilis rhizoplane isolates show a remarkable diversity of surfactin production and potential plant growth promoting traits. Finally, we discover that effects of surfactin deletion on biofilm formation can be strain specific and unexpected in the light of current knowledge on its role it this process.     

Overexpression of <Emphasis Type="Italic">SlERF1</Emphasis> tomato gene encoding an ERF-type transcription activator enhances salt tolerance

Ethylene-responsive factors (ERFs) play an important role in plant responses to stresses. For this study, we obtained sense- and antisense-SlERF1 transgenic tomato plants to analyze the function of the SlERF1 gene in tomato plants. Overexpression of SlERF1 in tomato plants enhanced salt tolerance during tomato seedling root development. In addition, tomato seedlings overexpressing SlERF1 showed the higher relative water content and lower MDA content and electrolyte leakage; they accumulated more free proline and soluble sugars, as compared with wild-type and antisense-SlERF1 transgenic tomato plants under salt stress. Moreover, SlERF1 activated the expression of stress-related genes, including LEA, P5CS, DREB3-1, and ltpg2 in tomato plants under salt stress. Thus, SlERF1 played a positive role in the salt tolerance of tomato plants.     

<Emphasis Type="Italic">Bacillus subtilis</Emphasis> and Vermicompost Suppress Damping-off Disease in Psyllium through Nitric Oxide-Dependent Signaling System

Fusarium oxysporum is one of pathogens causing the damping-off disease of Plantago psyllium in Iran. A greenhouse experiment was conducted to assess the effect of Bacillus subtilis and vermicompost singly and in combination on control of Fusarium–induced damping-off in psyllium. The results showed that vermicompost or B. subtilis, significantly increased the growth of psyllium seedlings and both were effective biocontrol agents against F. oxysporum. Among treatments at least damping-off incidence was recorded in combination of 50% vermicompost and B. subtilis. Results for the first time exhibited that vermicompost as well as B. subtilis induced systemic resistance through nitric oxide (NO) signaling and their combined application further than their individual treatments induced development of plant defense related enzymes including β-1,3-glucanase (GLU), phenylalanine ammonia-lyase (PAL), polyphenol oxidase (PPO) and the activities of antioxidant enzymes (ascorbate peroxidase, catalase, superoxide dismutase and peroxidase) and also more effectively reduced lipid peroxidation in psyllium leaves. These findings suggested potential of B. subtilis in promoting plant growth as well as inducing systemic resistance in the host plants, was enhanced by vermicompost application.     

Stimulation of Cellular Mechanisms of Potato Antivirus Resistance by the Action of a Preparation Based on <Emphasis Type="Italic">Bacillus subtilis</Emphasis> Bacteria

A comparative study of the antiviral activity of a new biopreparation based on bacteria Bacillus subtilis (strain 47) and commercial biopesticides (beta-protectin, phyto-protectin, frutin) in potato plants of Belarusian selection (Lileya and Scarb) was carried out in vivo and ex vitro. Pretreatment of plants with B. subtilis biopreparation and biopesticides prevents infection by potato X-viruses. The antiviral efficacy of B. subtilis does not depend on the conditions of plant growth and is more effective than biopesticides. Increased potato plant resistance to viral infection was accompanied by an effect leading to an increase in the mass of minitubers and the dry matter content in them. Treatment of potato plants with B. subtilis did not affect the molecular heterogeneity of peroxidase and superoxide dismutase, but it changed the relative activity of their isoforms. Treatment with a bacterial preparation increased the activity of superoxide dismutase when it was applied both to intact plants and those preinfected with virus. The results indicate that pretreatment of potato plants with the B. subtilis drug prevents virus infection, inducing the antiviral resistance of the potato, and is accompanied by a change in the activity of redox enzymes.