Subdominant species distribution in microsites around two life forms at a desert grassland‐shrubland transition zone

Question: In the same landscape context — at a desert grassland‐shrubland transition zone, how does subdominant plant abundance vary in microsites around dominant grasses and shrubs? Location: Sevilleta LTER, New Mexico, USA (34°21’N; 106°53’W; 1650 m a.s.l.). Methods: We compared the distribution of subdominant plants in canopy, canopy edge and interspace microsites around individual shrubs (Larrea tridentata) and grasses (Bouteloua eriopoda) at a transition zone that has been encroached by shrubs within the past 50 ‐ 100 a. Plots of variable size according to microsite type and dominant plant size were sampled. Results: Subdominant abundance was higher in microsites around L. tridentata shrubs than in microsites around B. eriopoda. Furthermore, differences in species abundance and composition were higher among microsites around grasses than among microsites around shrubs. The distribution of subdominants was mostly explained by their phenological characteristics, which indicates the importance of temporal variation in resources to their persistence. Conclusions: This study of coexistence patterns around dominants revealed ecological contrasts between two dominant life forms, but other factors (such as disturbances) have to be taken into consideration to evaluate landscape‐scale diversity.     

Microsite variation in light availability and seedling growth ofQuercus serrata in a temperate pine forest

Spatial heterogeneity in light availability for tree seedlings under the canopy of a temperate pine forest was studied. Six-day measurements at 10-s intervals revealed a great variety in the temporal patterns of photosynthetic photon flux density (PPFD) and histograms among observation days and microsites; mean daily total PPFD relative to full sun varied from 1.5% to 10.4% depending on the microsites. The occurrence and duration of PPFD above 80 μmol m⁻² s⁻¹, which might reflect sunfleck activity, varied greatly among the microsites. However, several simple empirical relationships were found between some parameters characterizing microsite light availability and sunfleck activity; the diffuse site factor was correlated well with other parameters, including daily total PPFD, daily totals and daily summed durations of high PPFD above any examined threshold level, and its contribution to daily total PPFD. Diffuse site factors which were obtained for 700 microsites within an area of 28 m² on three different occasions during the growing season showed high correlations within the microsite. Based on the regressed relationship between the relative growth rate of current-year seedlings ofQuercus serrata and the microsite diffuse site factor and the results of area-survey measurement of the diffuse site factor, an estimation was made of the abundance of potential ‘safe-sites’ for seedling growth of the species; the ‘safe sites’ were estimated to cover 40% and 0% of the total area of the sunny and shady sites of the forest, respectively.     

Low temperature effects on photosynthesis and growth of grapevine

Growth and photosynthesis of grapevine (Vitis vinifera L.) planted on two sloping cool climate vineyards were measured during the early growth season. At both vineyards, a small difference in mean minimum air temperature (1–3 °C) between two microsites accumulated over time, producing differences in shoot growth rate. The growth rates of the warmer (upper) microsite were 34–63% higher than the cooler (lower) site. Photosynthesis measurements of both east and west canopy sides revealed that the difference in carbon gain between the warmer and cooler microsites was due to low temperatures restricting the photosynthetic contribution of east‐facing leaves. East‐facing leaves at the warmer microsite experienced less time at suboptimal temperature while being exposed to high irradiance, contributing to an average 10% greater net carbon gain compared to the east‐facing leaves at the cooler microsite. This chilling‐induced reduction in photosynthesis was not due to net photo‐inhibition. Further analysis revealed that CO₂‐ and light‐saturated photosynthesis of grapevines was restricted by stomatal closure from 15 to 25 °C and by a limitation of RuBP regeneration and/or end‐product limitation from 5 to 15 °C. Changes in photosynthetic carboxylation efficiency implied that Rubisco activity may also play a regulatory role at all temperatures. This restriction of total photosynthetic carbon gain is proposed to be a major contributor to the temperature dependence of growth rate at both vineyards during the early season growth period.     

Spatial and seasonal patterns of microsite light availability in a remnant fragment of deciduous riparian forest and their implication in the conservation ofArisaema heterophyllum, a threatened plant species

Seasonal and spatial patterns of light availability were investigated in the understory of a small fragment (approximately 1300 m²) of a riparian deciduous forest of the Kokai River in central Japan dominated byQuercus acutissima Carruth., with the aim to understand the characteristics of microsite light availability forArisaema heterophyllum Blume, a threatened plant species uniquely associated with the riparian habitat. Diffuse site factor, which is the ratio of PFD (photon flux density, 400–700 nm) at a microsite to the open sky reference under diffuse light condition, was shown to be a satisfactory index for the evaluation of light availability for the understory plants in the habitat. Diffuse site factor 1,0 1,000 understory microsites along a 20 m transect from the edge to the interior of the forest, showed conspicuous seasonal changes in both mean and variation. Light availability decreased with seasonal tree canopy regeneration, with the highest spatial heterogeneity being recorded during the time of canopy closure. Auto-correlations of microsite light availability between different seasons were considerably high, suggesting the stability of relative light availability for individual microsites throughout the growing season ofA. heterophyllum. Fairly high light availability during summer season, which surpassed 20% of the open sky reference in most microsites, would be important for the growth and persistence of summer herbaceous plants likeA. heterophyllum.     

Taking insight into the gut microbiota of three spider species: No characteristic symbiont was found corresponding to the special feeding style of spiders

Microorganisms in insect guts have been recognized as having a great impact on their hosts' nutrition, health, and behavior. Spiders are important natural enemies of pests, and the composition of the gut microbiota of spiders remains unclear. Will the bacterial taxa in spiders be same as the bacterial taxa in insects, and what are the potential functions of the gut bacteria in spiders? To gain insight into the composition of the gut bacteria in spiders and their potential function, we collected three spider species, Pardosa laura, Pardosa astrigera, and Nurscia albofasciata, in the field, and high‐throughput sequencing of the 16S rRNA V3 and V4 regions was used to investigate the diversity of gut microbiota across the three spider species. A total of 23 phyla and 150 families were identified in these three spider species. The dominant bacterial phylum across all samples was Proteobacteria. Burkholderia, Ralstonia, Ochrobactrum, Providencia, Acinetobacter, Proteus, and Rhodoplanes were the dominant genera in the guts of the three spider species. The relative abundances of Wolbachia and Rickettsiella detected in N. albofasciata were significantly higher than those in the other two spider species. The relative abundance of Thermus, Amycolatopsis, Lactococcus, Acinetobacter Microbacterium, and Koribacter detected in spider gut was different among the three spider species. Biomolecular interaction networks indicated that the microbiota in the guts had complex interactions. The results of this study also suggested that at the genus level, some of the gut bacteria taxa in the three spider species were the same as the bacteria in insect guts.     

Similarities and spatial variations of bacterial and fungal communities in field rice planthopper (Hemiptera: Delphacidae) populations

Rice planthoppers are notorious plant sap‐feeding pests which cause serious damage. While several microbes in rice planthoppers have been broadly characterized, the abundance and diversity of bacteria and fungi in field planthoppers are largely unknown. This study investigated the bacterial and fungal community compositions of Chinese wild rice planthoppers Laodelphax striatellus and Sogatella furcifera using parallel 16S rRNA gene amplicon and internal transcribed space region sequencing. The bacteria varied significantly between the species and were partitioned significantly by sex, tissues and host environments in each species. The majority of bacteria were affiliated with the genera Wolbachia, Cardinium, Rickettsia and Pantoea. The abundance of Wolbachia was negatively correlated with that of Cardinium in both planthopper species. Compared with bacteria, the abundance and diversity of fungi did not differ between sexes but both were enriched in the gut. The bacterial community as a whole showed no significant correlation with the fungal community. The majority of fungi were related to Sarocladium, Alternaria, Malassezia, Aspergillus and Curvularia. A phylogenetic analysis revealed that these fungi were closely related to botanic symbionts or pathogens. Our results provide novel insights into the bacteria and fungi of rice planthoppers.     

Composition and clumping of seeds deposited by frugivorous birds varies between forest microsites

More frequent deposition of seeds by frugivores beneath plants in fruit could impose spatial limits to the distribution of plants dispersed by animals and contribute to species coexistence. Also, differences in diet and use of microhabitats by seed dispersers could promote spatial variation in the combination of seed species deposited. We investigated patterns of seed deposition of Miconia fosteri and Miconia serrulata (Melastomataceae) by birds in the Amazon. The goal was to determine how distribution and abundance of fruiting plants, both con‐ and hetero‐specifics, affect the spatial variability in clumping and composition of multi‐specific seed deposition. We established two 9‐ha plots in undisturbed terra‐firme understory in the Ecuadorian Amazon. Seed rain was sampled with seed traps located in four microsites: below plants of the focal species, below Anthurium eminens (Araceae), and in randomly selected microsites. We examined seed deposition in these microsites in relation to habitat, fruiting neighborhood (fruit abundance, and distance to and density of plants of the target species), and crop size of M. fosteri or M. serrulata to determine if microsites differed in abundance and species composition of seeds. Seed traps below plants in fruit received more seeds than did randomly located traps. Seeds of the target species were, moreover, more commonly deposited below con‐ rather than hetero‐specific plants. Seed aggregation below fruiting plants increased in forest neighborhoods where the abundance of fruits and the combination of fruiting plant species contributed to the arrival of seeds. Microsites differed notably in the combination of seeds deposited by frugivores, and differences were less pronounced among microsites that received seeds of M. fosteri and M. serrulata than among all microsites where at least some seed species were deposited by birds. We demonstrate that two closely related, ecologically similar species possess many similarities in their patterns of seed deposition and in the factors that affect those patterns. The combination of seed species deposited below foci of dispersal depended on the fruiting plant species, and the spatial patterns of seed deposition varied with the location of the microsite and the combination of co‐dispersed species in the neighborhood. Similar species that share the same dispersers were confronted with different combinations of seeds depending on the microsite where they arrived, which could promote forest heterogeneity in the combination of plant species.     

Shotgun metagenomics and microscopy indicate diverse cyanophytes,other bacteria,and microeukaryotes in the epimicrobiota of a northern Chilean wetland Nostoc (Cyanobacteria)

Prokaryotic Nostoc, one of the world's most conspicuous and widespread algal genera (similar to eukaryotic algae, plants, and animals) is known to support a microbiome that influences host ecological roles. Past taxonomic characterizations of surface microbiota (epimicrobiota) of free‐living Nostoc sampled from freshwater systems employed 16S rRNA genes, typically amplicons. We compared taxa identified from 16S, 18S, 23S, and 28S rRNA gene sequences filtered from shotgun metagenomic sequence and used microscopy to illuminate epimicrobiota diversity for Nostoc sampled from a wetland in the northern Chilean Altiplano. Phylogenetic analysis and rRNA gene sequence abundance estimates indicated that the host was related to Nostoc punctiforme PCC 73102. Epimicrobiota were inferred to include 18 epicyanobacterial genera or uncultured taxa, six epieukaryotic algal genera, and 66 anoxygenic bacterial genera, all having average genomic coverage ≥90X. The epicyanobacteria Geitlerinemia, Oscillatoria, Phormidium, and an uncultured taxon were detected only by 16S rRNA gene; Gloeobacter and Pseudanabaena were detected using 16S and 23S; and Phormididesmis, Neosynechococcus, Symphothece, Aphanizomenon, Nodularia, Spirulina, Nodosilinea, Synechococcus, Cyanobium, and Anabaena (the latter corroborated by microscopy), plus two uncultured cyanobacterial taxa (JSC12, O77) were detected only by 23S rRNA gene sequences. Three chlamydomonad and two heterotrophic stramenopiles genera were inferred from 18S; the streptophyte green alga Chaetosphaeridium globosum was detected by microscopy and 28S rRNA genes, but not 18S rRNA genes. Overall, >60% of epimicrobial taxa were detected by markers other than 16S rRNA genes. Some algal taxa observed microscopically were not detected from sequence data. Results indicate that multiple taxonomic markers derived from metagenomic sequence data and microscopy increase epimicrobiota detection.     

Wolbachia infection alters the relative abundance of resident bacteria in adult Aedes aegypti mosquitoes,but not larvae

Insect–symbiont interactions are known to play key roles in host functions and fitness. The common insect endosymbiont Wolbachia can reduce the ability of several human pathogens, including arboviruses and the malaria parasite, to replicate in insect hosts. Wolbachia does not naturally infect Aedes aegypti, the primary vector of dengue virus, but transinfected Ae. aegypti have antidengue virus properties and are currently being trialled as a dengue biocontrol strategy. Here, we assess the impact of Wolbachia infection of Ae. aegypti on the microbiome of wild mosquito populations (adults and larvae) collected from release sites in Cairns, Australia, by profiling the 16S rRNA gene using next‐generation sequencing. Our data indicate that Wolbachia reduces the relative abundance of a large proportion of bacterial taxa in Ae. aegypti adults, that is in accordance with the known pathogen‐blocking effects of Wolbachia on a variety of bacteria and viruses. In adults, several of the most abundant bacterial genera were found to undergo significant shifts in relative abundance. However, the genera showing the greatest changes in relative abundance in Wolbachia‐infected adults represented a low proportion of the total microbiome. In addition, there was little effect of Wolbachia infection on the relative abundance of bacterial taxa in larvae, or on species diversity (accounting for species richness and evenness together) detected in adults or larvae. These results offer insight into the effects of Wolbachia on the Ae. aegypti microbiome in a native setting, an important consideration for field releases of Wolbachia into the population.     

Importance of Seed and Microsite Limitation: Native Wildflower Establishment in Non‐native Pasture

Barriers to establishing native plant communities on former pasture include dominance by a single planted species, hydrologic and edaphic alteration, and native species propagule limitation. Establishment may be dispersal‐limited (propagules do not arrive at the site), microsite‐limited (areas suitable for seedling emergence and survival do not exist), or both. Successful restoration strategies hinge on identifying and addressing critical limitations. We examined seed and microsite limitation to establishment of a native wildflower (Coreopsis lanceolata ) in a former pasture dominated by Paspalum notatum (bahiagrass). We determined the relative and interactive effects of microsite (irrigation and disturbance) and seed limitation on C. lanceolata establishment. We tested (1) irrigation (none, pre‐seeding, and pre‐ and post‐seeding), (2) disturbance (none, sethoxydim, glyphosate, and topsoil removal), and (3) C. lanceolata seeding rate (three seeding densities). Applying glyphosate before seeding increased C. lanceolata establishment compared to other disturbance treatments. Ultimately, C. lanceolata establishment was not affected by irrigation. Coreopsis lanceolata establishment was limited when seeded at 100 live seeds/m² but not at 600 or 1100 live seeds/m². Seed and microsite availability interactively affected C. lanceolata establishment, in that microsite limitation was biologically relevant only when a minimum number of seeds were present. In practice, both seed and microsite requirements must be met for successful establishment, and increasing the availability of seeds or microsites does not compensate for limitations of the other. Here, it is the relative importance of seed and microsite limitations that drives plant establishment; these limitations do not represent a simple dichotomy.     

Whitebark pine facilitation at treeline: potential interactions for disruption by an invasive pathogen

In stressful environments, facilitation often aids plant establishment, but invasive plant pathogens may potentially disrupt these interactions. In many treeline communities in the northern Rocky Mountains of the U.S. and Canada, Pinus albicaulis, a stress‐tolerant pine, initiates tree islands at higher frequencies than other conifers – that is, leads to leeward tree establishment more frequently. The facilitation provided by a solitary (isolated) P. albicaulis leading to tree island initiation may be important for different life‐history stages for leeward conifers, but it is not known which life‐history stages are influenced and protection provided. However, P. albicaulis mortality from the non‐native pathogen Cronartium ribicola potentially disrupts these facilitative interactions, reducing tree island initiation. In two Rocky Mountain eastern slope study areas, we experimentally examined fundamental plant–plant interactions which might facilitate tree island formation: the protection offered by P. albicaulis to leeward seed and seedling life‐history stages, and to leeward krummholz conifers. In the latter case, we simulated mortality from C. ribicola for windward P. albicaulis to determine whether loss of P. albicaulis from C. ribicola impacts leeward conifers. Relative to other common solitary conifers at treeline, solitary P. albicaulis had higher abundance. More seeds germinated in leeward rock microsites than in conifer or exposed microsites, but the odds of cotyledon seedling survival during the growing season were highest in P. albicaulis microsites. Planted seedling survival was low among all microsites examined. Simulating death of windward P. albicaulis by C. ribicola reduced shoot growth of leeward trees. Loss of P. albicaulis to exotic disease may limit facilitation interactions and conifer community development at treeline and potentially impede upward movement as climate warms.     

Long‐term nitrogen fertilization decreases bacterial diversity and favors the growth of Actinobacteria and Proteobacteria in agro‐ecosystems across the globe

Long‐term elevated nitrogen (N) input from anthropogenic sources may cause soil acidification and decrease crop yield, yet the response of the belowground microbial community to long‐term N input alone or in combination with phosphorus (P) and potassium (K) is poorly understood. We explored the effect of long‐term N and NPK fertilization on soil bacterial diversity and community composition using meta‐analysis of a global dataset. Nitrogen fertilization decreased soil pH, and increased soil organic carbon (C) and available N contents. Bacterial taxonomic diversity was decreased by N fertilization alone, but was increased by NPK fertilization. The effect of N fertilization on bacterial diversity varied with soil texture and water management, but was independent of crop type or N application rate. Changes in bacterial diversity were positively related to both soil pH and organic C content under N fertilization alone, but only to soil organic C under NPK fertilization. Microbial biomass C decreased with decreasing bacterial diversity under long‐term N fertilization. Nitrogen fertilization increased the relative abundance of Proteobacteria and Actinobacteria, but reduced the abundance of Acidobacteria, consistent with the general life history strategy theory for bacteria. The positive correlation between N application rate and the relative abundance of Actinobacteria indicates that increased N availability favored the growth of Actinobacteria. This first global analysis of long‐term N and NPK fertilization that differentially affects bacterial diversity and community composition provides a reference for nutrient management strategies for maintaining belowground microbial diversity in agro‐ecosystems worldwide.     

Ecological responses of Primula nutans to centimeter-scale topographic and environmental variability in an alpine wetland

Primula nutans Georgi is a herbaceous species broadly distributed in wetlands on the Qinghai–Tibetan Plateau. These wetlands are often spatially highly heterogeneous because of their hummock-and-hollow microtopography. To address how P. nutans can be so broadly distributed on these wetlands, we examined ramet distribution, abundance, and growth performance in environmentally variable microsites at the centimeter scale. P. nutans showed significantly higher ramet density on the south-orientated microsites than on the north-orientated microsites. With increasing relative microsite elevation on the hummocks, ramet density increased significantly, but individual leaf area decreased significantly. Principle component analysis and multiple regression analysis indicated that microsites at higher elevations tend to have higher light availability and higher ramet density. The study suggests that P. nutans shows high plasticity in the distribution, abundance, and growth performance in response to the microtopography at the centimeter scale, which may contribute to the broad distribution of the species in the hummock-and-hollow wetlands in harsh alpine environments on the Tibetan Plateau.     

不同生长季节黑果枸杞的根际细菌群落结构

【目的】黑果枸杞是一种耐盐植物,是我国西北干旱区盐渍土改良的优良植物物种,其根际土壤细菌群落结构在不同生长时期的变化特征尚不清楚。【方法】本研究采用Illumina MiSeq高通量测序研究了黑果枸杞3个生长阶段的根际土壤细菌群落结构的动态变化。【结果】所有样品中共获得317467条序列,对应于7028个细菌/古细菌OTUs。根际土壤细菌群落的α多样性显著高于非根际土壤。衰老期根际细菌的多样性和丰富度明显低于营养生长期和花/果期。变形菌门和酸杆菌门的相对丰度随生长时期的演变而逐渐降低,而蓝细菌门则相反。厚壁菌门的丰度在衰老期明显高于营养生长期和花/果期。优势属的组成也随生长期的演变而改变,营养生长期、花/果期、衰老期的优势属数量分别为17、16、4,且组成也具有差异。相似性分析表明营养生长期和花/果期的根际细菌群落具有很高的相似性,衰老期根际细菌群落组成与生长期和花/果期具有很高差异,然而与非根际土壤的群落结构具有较高的相似性。【结论】根际土壤细菌群落多样性和组成随生长期的改变而表现出明显的动态变异性,表明黑果枸杞生长时期对根际土壤细菌群落结构具有重要的影响。     

Deep 16S rRNA gene sequencing of anterior foregut microbiota from the blue‐green sharpshooter (Graphocephala atropunctata)

Graphocephala atropunctata or the blue‐green sharpshooter (BGSS) has been long recognized as the principal native vector of Xylella fastidiosa in coastal, wine‐grape‐growing areas of California. X. fastidiosa is the causative agent of Pierce's disease of grapevine and of numerous other leaf‐scorching diseases of agronomically important plants. X. fastidiosa has been shown to colonize the cibarium and precibarium (anterior foregut) of sharpshooters, where it may encounter other naturally occurring bacterial species. Here, deep 16S rRNA sequencing was used to survey the microbiota associated with the BGSS anterior foregut. DNA was extracted from dissected cibaria and precibaria; a portion of the 16S rRNA gene was amplified and sequenced using Illumina MiSeq technology. An average of approximately 32 000 sequence reads per insect was obtained. Agrobacterium was the most common genus detected; additional sequencing of the full‐length 16S rRNA gene further identified this as Agrobacterium tumefaciens or A. fabrum. A number of additional plant‐associated bacterial genera were also detected (Pseudomonas and Ensifer), along with genera known to be associated with insects (Baumannia), and soil (Stenotrophomonas, Caulobacter, Delftia, Achromobacter, Acinetobacter and Novosphingobium). Approximately half of the genera reported here have been previously reported to be prevalent in the cibarium and precibarium of glassy‐winged sharpshooter (GWSS; Homalodisca vitripennis). Many of these cibarium‐ and precibarium‐associated genera likely interact with X. fastidiosa.     

Species concept and nomenclatural changes within the genera Elliptochloris and Pseudochlorella (Trebouxiophyceae) based on an integrative approach

The genera Elliptochloris and Pseudochlorella were erected for Chlorella‐like green algae producing two types of autospores and cell packages, respectively. Both genera are widely distributed in different soil habitats, either as free living or as photobionts of lichens. The species of these genera are often difficult to identify because of the high phenotypic plasticity and occasional lack of characteristic features. The taxonomic and nomenclatural status of these species, therefore, remains unclear. In this study, 34 strains were investigated using an integrative approach. Phylogenetic analyses demonstrated that the isolates belong to two independent lineages of the Trebouxiophyceae (Elliptochloris and Prasiola clades) and confirmed that the genera are not closely related. The comparison of morphology, molecular phylogeny, and analyses of secondary structures of SSU and ITS rDNA sequences revealed that all of the strains belong to three genera: Elliptochloris, Pseudochlorella, and Edaphochlorella. As a consequence of the taxonomic revisions, we propose two new combinations (Elliptochloris antarctica and Pseudochlorella signiensis) and validate Elliptochloris reniformis, which is invalidly described according to the International Code for Nomenclature (ICN), by designating a holotype. To reflect the high phenotypic plasticity of P. signiensis, two new varieties were described: P. signiensis var. magna and P. signiensis var. communis. Chlorella mirabilis was not closely related to any of these genera and was, therefore, transferred to the new genus Edaphochlorella. All of the taxonomic changes were highly supported by all phylogenetic analyses and were confirmed by the ITS‐2 Barcodes using the ITS‐2/CBC approach.     

Conventional farming impairs Rhizoctonia solani disease suppression by disrupting soil food web

Intensive farming in agriculture raises questions in relation to environmental sustainability and the widespread use of agrochemicals. In the present work, we compare the impact of organic and intensive farming, in connection to the soil suppressiveness against the soilborne pathogen Rhizoctonia solani. Three farms were considered in the study: two practicing organic cultivation (for 10 and 20 years, respectively), and one applying conventional cultivation. Soil suppressiveness was assessed in a greenhouse bioassay with lettuce (Lactuca sativa). Soil microbiome was characterized by combining BIOLOG EcoPlates^? with high‐throughput sequencing of bacterial and eukaryotic rRNA gene markers. Suppressiveness towards R. solani was higher in organic than in conventional farming soil, but this property was lost after soil sterilization. Functional biodiversity was significantly higher in the two organic soils, and this parameter was predictive of the suppressiveness towards R. solani. According to our analyses, the overall microbial taxonomic diversity was unlinked to suppressiveness. A correlation analysis, carried out at the genus level for the most abundant bacterial and eukaryotic microbial taxa, showed that 58.7% of the genera had a statistically significant correlation with suppressiveness. In particular, the genera Flavisolibacter, Massilia, Pseudomonas, Ramlibacter, Rhizophus and the oligochaete worms belonging to the Enchytraeidae family positively correlated with the disease suppression.     

Molecular analysis of the prevalent microbiota of human male and female forehead skin compared to forearm skin and the influence of make-up

Aims: To compare the bacterial diversity of two different ecological regions including human forehead, human forearm and to estimate the influence of make‐up. Methods and Results: Twenty‐two swab‐scraped skin samples were analysed by profiling bacterial 16S rRNA genes using PCR‐based sequencing of randomly selected clones. Of the 1056 clones analysed, 67 genera and 133 species‐level operational taxonomic units (SLOTUs) belonging to eight phyla were identified. A core set of bacterial taxa was found in all samples, including Actinobacteria, Firmicutes, and Proteobacteria, but pronounced intra‐ and interpersonal variation in bacterial community composition was observed. Only 4·48% of the genera and 1·50% of the SLOTUs were found in all 11 subjects. In contrast to the highly diverse microbiota of the forearm skin, the forehead skin microbiota represented a small‐scale ecosystem with a few genera found in all individuals. The use of make‐up, including foundation and powder, significantly enlarged the community diversity on the forehead skin. Conclusions: Our study confirmed the presence of a highly diverse microbiota of the human skin as described recently. In contrast to forearm skin, gender does not seem to have much influence on the microbial community of the forehead skin. However, the use of make‐up was associated with a remarkable increase in the bacterial diversity. Significance and Impact of the Study: This study enhances our knowledge about the highly complex microbiota of the human skin and demonstrates for the first time the significant effect of make‐up on the bacterial diversity of the forehead skin.     

Diverse cellular colonizing endophytic bacteria in field shoots and in vitro cultured papaya with physiological and functional implications

The study was envisaged to assess the extent of normally uncultivable endophytic bacteria in field papaya plants and in vitro established cultures adopting cultivation vs molecular analysis and microscopy. Surface‐sterilized axillary shoot‐buds of papaya ‘Arka Surya’ revealed high bacterial diversity as per 16S rRNA metagene amplicon sequencing (6 phyla, 10 classes, 21 families) with an abundance of Pseudomonas (Gammaproteobacteria), which also formed a common contaminant for in vitro cultured field explants. Molecular analysis of seedling shoot‐tip‐derived healthy proliferating cultures of three genotypes (‘Arka Surya’, ‘Arka Prabhath’, ‘Red Lady’) with regular monthly subculturing also displayed high bacterial diversity (11–16 phyla, >25 classes, >50 families, >200 genera) about 12–18 months after initial establishment. ‘Arka Surya’ and ‘Red Lady’ cultures bore predominantly Actinobacteria (75–78%) while ‘Arka Prabhath’ showed largely Alphaproteobacteria corroborating the slowly activated Methylobacterium sp. Bright‐field direct microscopy on tissue sections and tissue homogenate and epi‐fluorescence microscopy employing bacterial DNA probe SYTO‐9 revealed abundant intracellular bacteria embracing the next‐generation sequencing elucidated high taxonomic diversity. Phylogenetic investigation of communities by reconstruction of unobserved states‐ PICRUSt‐ functional annotation suggested significant operational roles for the bacterial‐biome. Metabolism, environmental information processing, and genetic information processing constituted major Kyoto Encyclopedia of Genes and Genomes KEGG attributes. Papaya stocks occasionally displayed bacterial growth on culture medium arising from the activation of originally uncultivable organisms to cultivation. The organisms included Bacillus (35%), Methylobacterium (15%), Pseudomonas (10%) and seven other genera (40%). This study reveals a hidden world of diverse and abundant conventionally uncultivable cellular‐colonizing endophytic bacteria in field shoots and micropropagating papaya stocks with high genotypic similarity and silent participation in various plant processes/pathways.