Cropping intensity and rainfall effects on upland rice yields in northern Laos

Two fractions of earthworm humic substances, differing in nominal molecular weight, containing a very low amount of free IAA, and exhibiting auxin-like properties, were prepared and characterised by infrared and ¹H-NMR spectroscopy. In this study we investigate their effects on stomatal opening, as influenced by phospholipase A₂, in leaf of the Argenteum mutant of pea (Pisum sativum L.) Both of the humic fractions caused stomatal opening in the epidermal peels. The response showed a broad biphasic dose dependence and the effective concentrations were similar for the two fractions. The maximal stomatal apertures in response to both humic substances were similar to that caused by IAA and somewhat less than the response to white light or fusicoccin. Two inhibitors of phospholipase A₂ selectively blocked the response of stomata to both IAA and humic substances, without affecting the response to light or fusicoccin. We conclude that stomatal opening in response to auxin and humic substances involves activation of a phospholipase A₂ that is not involved in signalling the response to light or fusicoccin.     

云南澜沧县陆稻品种资源多样性和原生境保护

云南澜沧县不仅存在丰富的陆稻品种多样性和形态多样性,而且也存在陆稻生长环境和栽种管理方法的多样性,即山地民族在陆稻栽种方面的土著知识（indigenous knowledge,IK）多样性,讨论了由传统的刀耕火种生产制度过渡到现代固耕生产方式对陆稻生产及品种资源保存和保护的影响。提出了陆稻资源多样性保护的建议。     

Genetic resources offer efficient tools for rice functional genomics research

Rice is an important crop and major model plant for monocot functional genomics studies. With the establishment of various genetic resources for rice genomics, the next challenge is to systematically assign functions to predicted genes in the rice genome. Compared with the robustness of genome sequencing and bioinformatics techniques, progress in understanding the function of rice genes has lagged, hampering the utilization of rice genes for cereal crop improvement. The use of transfer DNA (T‐DNA) insertional mutagenesis offers the advantage of uniform distribution throughout the rice genome, but preferentially in gene‐rich regions, resulting in direct gene knockout or activation of genes within 20–30 kb up‐ and downstream of the T‐DNA insertion site and high gene tagging efficiency. Here, we summarize the recent progress in functional genomics using the T‐DNA‐tagged rice mutant population. We also discuss important features of T‐DNA activation‐ and knockout‐tagging and promoter‐trapping of the rice genome in relation to mutant and candidate gene characterizations and how to more efficiently utilize rice mutant populations and datasets for high‐throughput functional genomics and phenomics studies by forward and reverse genetics approaches. These studies may facilitate the translation of rice functional genomics research to improvements of rice and other cereal crops.     

Varietal response to iron chlorosis in upland rice

Summary In a study involving twenty upland rice genotypes, the induction of iron chlorosis was found to be more by superphosphate application than due to lime incorporation into an alfisol soil under greenhouse conditions in GI tray-grown seedlings as quantified by two parameters viz., total chlorphyll content and Fe²⁺ content. Of the two indices of iron chlorosis, Fe²⁺ was more sensitive than chlorophyll content. Genotypes were grouped into efficient and inefficient categories both in terms of absorption and utilization of iron based on the degree of reduction in response to added superphosphate.     

The unbearable heaviness of being Kri: house construction and ethnolinguistic transformation in upland Laos

Kri people in central Laos traditionally engage in ‘heavy’ practices, including a stipulation that houses must be relocated and the flooring discarded upon a death in the family. Such ‘heavy’ practices are considered ‘real Kri’, and they are not adhered to by those who identify as Kri Phòòngq. This article examines the adoption of more enduring housing construction among the Kri, and the dynamics of ethnic identity implied by the dilemmas raised for individuals and families who must choose between (a) maintaining the heavy life of real Kri, (b) innovating new and less heavy solutions, or (c) changing identity entirely.     

Mapping QTLs associated with drought avoidance in upland rice

The identification of molecular markers linked to genes controlling drought resistance factors in rice is a necessary step to improve breeding efficiency for this complex trait. QTLs controlling drought avoidance mechanisms were analyzed in a doubled-haploid population of rice. Three trials with different drought stress intensities were carried out in two sites. Leaf rolling, leaf drying, relative water content of leaves and relative growth rate under water stress were measured on 105 doubled haploid lines in two trials and on a sub-sample of 85 lines in the third one. Using composite interval mapping with a LOD threshold of 2.5, the total number of QTLs detected in all trials combined was 11 for leaf rolling, 10 for leaf drying, 11 for relative water content and 10 for relative growth rate under stress. Some of these QTLs were common across traits. Among the eleven possible QTLs for leaf rolling, three QTLs (on chromosomes 1, 5 and 9) were common across the three trials and four additional QTLs (on chromosomes 3, 4 and 9) were common across two trials. One QTL on chromosome 4 for leaf drying and one QTL on chromosome 1 for relative water content were common across two trials while no common QTL was identified for relative growth rate under stress. Some of the QTLs detected for leaf rolling, leaf drying and relative water content mapped in the same places as QTLs controlling root morphology, which were identified in a previous study involving the same population. Some QTL identified here were also located similarly with other QTLs for leaf rolling as reported from other populations. This study may help to chose the best segments for introgression into rice varieties and improvement of their drought resistance.     

Genetic variation detected with RAPD markers among upland and lowland rice cultivars (Oryza sativa L.)

Genetic variation of nine upland and four lowland rice cultivars (Oryza sativa L.) was investigated at the DNA level using the randomly amplified polymorphic DNA (RAPD) method via the polymerase chain reaction (PCR). Forty-two random primers were used to amplify DNA segments and 260 PCR products were obtained. The results of agarosegel electrophoretic analysis of these PCR products indicated that 208 (80%) were polymorphic. All 42 primers used in this experiment were amplified and typically generated one-to-four major bands. Only two primers showed no polymorphisms. In general, a higher level of polymorphism was found between japonica and indica subspecies while fewer polymorphisms were found between upland and lowland cultivars within the indica subspecies. A dendrogram that shows the genetic distances of 13 rice cultivars was constructed based on their DNA polymorphisms. Classification of rice cultivars based on the results from the RAPD analysis was identical to the previous classification based on isozyme analysis. This study demonstrated that RAPD analysis is a useful tool in determining the genetic relationships among rice cultivars.     

Effects of silicon on aluminum toxicity in upland rice plants

Aims

This study aimed to determine the capacity of Si to mitigate Al toxicity in upland rice plants (Oryza sativa L.) by evaluating plant growth and the Si and Al uptake kinetics.

Methods

Plants were grown for 40 days, after which the Si and Al uptake kinetics (Cmin, Km and Imax) were analyzed. Then, the shoots and roots were separated, and the dry matter, root morphology and Si and Al concentration and accumulation in the plant were evaluated.

Results

Aluminum decreased plant growth and the Si uptake capacity by decreasing the root growth and Si transport system efficiency in the upland rice roots (> Km and > Cmin). Silicon mitigated Al toxicity in the upland rice plants by decreasing Al transport to the plant shoots, although it did not reduce the Al uptake rate (Imax). Si treatment increased the growth of upland rice plant shoots grown in the presence of Al without influencing the root growth. The alleviation of Al toxicity by Si is more evident in the susceptible upland rice cultivar Maravilha.

Conclusions

Silicon mitigated Al toxicity in the upland rice plants by decreasing Al transport to the plant shoots but did not reduce the Al uptake rate by roots.

     

Leaf gas exchange of upland and lowland rice cultivars

Leaf gas exchange of upland and lowland rice cultivars were measured during late vegetative and during grain filling stages in the field under upland and lowland growth conditions. The rate of photosynthesis and water use efficiency (the rate of photosynthesis/the rate of transpiration) under upland conditions decreased with ageing, but generally varied little among four cultivars. At mid-grain filling under lowland conditions, upland cultivars showed lower rates of photosynthesis and transpiration than the lowland cultivars with concomitant reduction in whole plant conductance. At this stage, water use efficiency was higher under upland conditions than under lowland conditions, particularly in the upland cultivars. Water stress reduced the rate of photosynthesis without altering water use efficiency.     

海南中南部地区旱稻(山兰稻)种质资源及保育模式

山兰稻是一类适应性很强的旱稻品种,对于开发节水性高产稻种具有重要意义。该研究调查了海南中南部地区山兰稻种质资源的组成,并选种5个山兰稻品种开展其农艺性状和生产性状的研究,以期了解山兰稻种质资源在该地区的分布及生产现状,并进一步为其保护模式提供理论基础。结果表明:调查共获得38份山兰稻种质资源,含25个品种,主要分布在保亭、琼中和五指山三个市县,在现有的品种中约有45.0%在种植利用。因此,山兰稻品种资源面临濒危,亟需保护;这25个品种可分为籼稻和粳稻2个类型,共聚成6个类群,不同区域间的种质资源具有亲缘性,其中3个独立聚集的品种有明显区域性分布的特征;5个品种容易种植,生产性状较一致,其全生育期约为138 d,与历史栽培记录时间一致,遗传特性稳定,单位产量为2.0~2.8t·hm-2,平均产量为2.4 t·hm-2。综上说明保护山兰稻品种的成本和技术难度不高,但其育种和栽培技术还需要进一步研究,种质资源的开发模式应结合生态保护、品种保育、社会需求等多角度进行综合考虑。     

Genetic variation in rice

Completion of the genomic sequencing of rice has enhanced the discovery of new genes. Wild rice relatives are good sources for extending the genetic variation of cultivated rice. Reproductive barriers are commonly found in distant crosses of rice and are attracting attention. The combination of genetic analyses and molecular tools has greatly facilitated the molecular cloning of rice genes based on the classical approach and enabled the tracking of dissemination of the alleles for domestication. Basic information for population genetics study in rice is still being collected and is expected to provide an alternative approach for finding new genes. The wide genetic variation available in wild rice relatives and the combination of various genetic approaches will allow the analysis and understanding of genetic variation at the nucleotide sequence level, as well as the discovery of novel alleles by sequence-based approaches.     

State formation,social hierarchies,and ethnic dynamics: a case from upland Laos

State formation below the national scale remains under-researched. In this article, the reconstitution of the local history of an upland region of Laos – Sepon – reveals a process of state formation from a territorial margin. Contrary to James C. Scott’s thesis on state-evading peoples, members of a local ethnic minority population – the Phuthai – have been part of the making of the state over centuries. In addition to the material aspects of state-making, this article explores its intangible components that are often neglected in analyses of state formation. This wider lens is particularly applied to the Communist state-making efforts in Sepon during the American-Vietnam War. These have had the unintended consequence of producing a new class that replicates age-old social hierarchies and have resulted in Sepon, and probably other upland areas of contemporary Laos, being more socially inequitable than the Communist Revolution intended.     

Different maternal origins of Japanese lowland and upland rice populations

Plastid subtype ID (PS-ID) sequences were determined from sequence data based on CA repeats between genes rpl16 and rpl14 in Japanese lowland and upland cultivars. The PS-ID sequences of Japanese rice cultivars showed that there are different maternal origins between lowland and upland cultivars. One subtype, 6C7A, of PS-ID sequences was predominant in all but one Japanese lowland cultivar and carried a combination of the indica-specific subtype 8C8A and japonica-specific nuclear markers for the isozyme genotype. It is probably a nuclear-cytoplasmic recombinant resulting from natural out-crossing and succeeding self-pollination. The origin of the plastid was re-confirmed by the existence of an indica-specific deletion in the plastid genome. In contrast, the Japanese upland cultivars showed two subtypes, 7C6A and 6C7A, of PS-ID sequences. An upland-specific isozyme allele as a nuclear marker was equally predominant in cultivars carrying each subtype. The existence of these particular upland-specific nuclear and cytoplasmic genotypes suggests that the origin of Japanese upland cultivars is different from that of Japanese lowland cultivars. Cultivars carrying the upland-specific nuclear genotype are common in Southeast Asia, but the combination of the upland-specific nuclear and cytoplasmic genotypes which is the same as the Japanese upland predominant type was found in cultivars only in Taiwan and Indonesia. Japanese upland cultivars are closely related to those cultivars.     

Randomized soil survey of the distribution of Burkholderia pseudomallei in rice fields in Laos

Melioidosis is a major cause of morbidity and mortality in Southeast Asia, where the causative organism (Burkholderia pseudomallei) is present in the soil. In the Lao People's Democratic Republic (Laos), B. pseudomallei is a significant cause of sepsis around the capital, Vientiane, and has been isolated in soil near the city, adjacent to the Mekong River. We explored whether B. pseudomallei occurs in Lao soil distant from the Mekong River, drawing three axes across northwest, northeast, and southern Laos to create nine sampling areas in six provinces. Within each sampling area, a random rice field site containing a grid of 100 sampling points each 5 m apart was selected. Soil was obtained from a depth of 30 cm and cultured for B. pseudomallei. Four of nine sites (44%) were positive for B. pseudomallei, including all three sites in Saravane Province, southern Laos. The highest isolation frequency was in east Saravane, where 94% of soil samples were B. pseudomallei positive with a geometric mean concentration of 464 CFU/g soil (95% confidence interval, 372 to 579 CFU/g soil; range, 25 to 10,850 CFU/g soil). At one site in northwest Laos (Luangnamtha), only one sample (1%) was positive for B. pseudomallei, at a concentration of 80 CFU/g soil. Therefore, B. pseudomallei occurs in Lao soils beyond the immediate vicinity of the Mekong River, alerting physicians to the likelihood of melioidosis in these areas. Further studies are needed to investigate potential climatic, soil, and biological determinants of this heterogeneity.     

Metabolic adaptation to flooding stress in upland and lowland rice seedlings

Ability of metabolic adaptation in upland and lowland rice (Oryza sativa L.) seedlings to flooding stress was compared. Flooding stress increased alcohol dehydrogenase (ADH) activity and ethanol concentration in shoots and roots of the upland and lowland rice seedlings. The difference in ADH activity and ethanol concentration in shoots between the upland and lowland rice was not apparent. However, both ADH activity and ethanol concentration in roots of the lowland rice were 2-fold greater than those in roots of the upland rice, suggesting that flooding-induction of ethanolic fermentation in lowland rice roots may be significantly greater than that in the upland rice roots. Since flooding often causes the anaerobic conditions in rooting zone than aerial part of plants and ethanolic fermentation is essential to survive in the anaerobic conditions, the ability of metabolic adaptation in lowland rice seedlings to flooding stress may be greater than that in upland rice seedlings.     

Phenological responses of upland rice grown along an altitudinal gradient

High altitude upland rice (Oryza sativa L.) production systems are expected to benefit from climate change induced increase in temperatures. The potential yield of rice genotypes is governed by the thermal environment experienced during crop development phases when yield components are determined. Thus, knowledge on genotypic variability in phenotypic responses to variable temperature is required for assessing the adaptability of rice production to changing climate. Although, several crop models are available for this task, genotypic thermal constants used to simulate crop phenology vary strongly among the models and are under debate. Therefore, we conducted field trials with ten contrasting upland rice (O. sativa L.) genotypes on three locations along an altitudinal gradient with five monthly staggered sowing dates for two years in Madagascar with the aim to study phenological responses at different temperature regimes. We found that, crop duration is equally influenced by genotype selection, sowing date and year in the high altitude. In contrast, in mid altitudes genotype has no effect on crop duration. At low altitudes crop duration is more affected by sowing date. Grain yield is strongly affected by low temperatures at high altitudes and severly influenced by frequent tropical cyclones at low altitudes. In high altitude, genotype explained 68% of variation in spikelet sterility, whereas in mid and low altitudes environment explained more than 70% of the variation. The phenological responses determining crop duration and yield, the basic genotypic thermal constants, and the analyses of genotypic thermal responses with regard to spikelet sterility reported here, provide valuable information for the improvement of rice phenological models urgently needed to develop new genotypes and better adapted cropping calendars.     

Influence of aluminum in nutrient solutions on chemical composition in upland rice cultivars

Summary Aluminum toxicity is an important growth limiting factor for upland rice production on oxisols of cerrado region in Brazil. Data related to the effect of Al on uptake of nutrients for rice crop are limited. The effect of five Al concentrations (0, 10, 20, 40 and 60 ppm) in culture solution on the chemical composition of 30 upland rice cultivars was studied.Aluminum concentration and content in plant tissues were increased with higher levels of Al in all cultivar. In the roots Al content was higher as compared with the tops. Critical toxic level of Al in the tops of 21 days old plants varied from 100 to 417 ppm depending on the cultivars. Rice cultivars responded differently to Al treatments with respect to nutrients uptake. Increased Al concentrations in the solution exerted an inhibiting effect on the concentrations and contents of N, P, K, Ca, Mg, S, Na, Zn, Fe, Mn, B and Cu. Thus the inhibition was more effective for macronutrients in the plant tops in following order: Mg>Ca>P>K>N>S>Na. Whereas for micronutrients it was in the order of Mn>Zn>Fe>Cu>B. Morphological, physiological and biochemical effects of Al, toxicity responsible for the reduction in plant nutrient uptake, are discussed.     

Genomic landscape of parallel domestication of upland rice and its implications

Parallel domestication has been widely acknowledged but itsgenetic basis remains largely unclear. As an important rice ecotype, upland rice was assumedly domesticated multiple times in two rice subspecies (Indica and Japonica) and provides a feasible system to explore the genetic basis of parallel domestication. To uncover the genome‐wide pattern of genetic differentiation between upland and lowland rice and explore the parallelism of genetic changes during upland rice domestication, we obtained whole‐genome sequences of 95 rice landraces and yielded genome‐wide expression data for five tissues of representative accessions of upland and lowland rice. Our phylogenetic analyses confirmed multiple domestications of the upland ecotype in two rice subspecies. Genomic scans based on resequencing data identified substantial differentiation between the upland and lowland ecotypes with 11.4% and 14.8% of the genome diverged between the two ecotypes in Indica and Japonica, respectively. Further genome‐wide gene expression analyses found that 30% of effectively expressed genes were significantly differentiated between two ecotypes, indicating the importance of regulation changes in the domestication of upland rice. Importantly, we found that only 1.8% of differentiated genomes and 1.6% of differentially expressed genes were shared by upland Indica and upland Japonica, suggestive of largely unparallel genetic alterations during upland rice domestication. These findings not only provide new insights into the genetic basis of parallel domestication at the genome scale but could also facilitate geneticimprovement and breeding of rice and crops in general.     

Nitrogen contribution of cowpea green manure and residue to upland rice

Cowpea, Vigna unguiculata (L.) Walp., is well adapted to acid upland soil and can be grown for seed, green manure, and fodder production. A 2-yr field experiment was conducted on an Aeric Tropaqualf in the Philippines to determine the effect of cowpea management practice on the response of a subsequent upland rice crop to applied urea. Cowpea was grown to flowering and incorporated as a green manure or grown to maturity with either grain and pods removed or all aboveground vegetation removed before sowing rice. Cowpea green manure accumulated on average 68 kg N ha⁻¹, and aboveground residue after harvest of dry pods contained on average 46 kg N ha⁻¹. Compared with a pre-rice fallow, cowpea green manure and residue increased grain yield of upland rice by 0.7 Mg ha⁻¹ when no urea was applied to rice. Green manure and residue substituted for 66 and 70 kg urea-N ha⁻¹ on upland rice, respectively. In the absence of urea, green manure and residue increased total aboveground N in mature rice by 12 and 14 kg N ha⁻¹, respectively. These increases corresponded to plant recoveries of 13% for applied green manure N and 24% for applied residue N. At 15 d after sowing rice (DAS), 33% of the added green manure N and 16% of the added residue N was recovered as soil (nitrate + ammonium)-N. At 30 DAS, the corresponding recoveries were 20 and 37% for green manure N and residue N, respectively. Cowpea cropping with removal of all aboveground cowpea vegetation slightly increased (p<0.05) soil (nitrate + ammonium)-N at 15 DAS as compared with the pre-rice fallow, but it did not increase rice yield. Cowpea residue remaining after harvest of dry pods can be an effective N source for a subsequent upland rice crop.