甜菜种质资源遗传多样性研究与利用

通过多年对中国甜菜种质资源搜集、整理、繁种、鉴定及编目入库等方面进行科技攻关研究,弄清了目前我国甜菜中期库保存种质资源源遗传多样性的丰富程度,根据对已经编目入国家种质长期库的1382份甜菜种质资源材料的主要经济性状鉴定试验结果,证实了我国甜菜种质资源的块根产量、含糖率和产糖量均以西北生态区最高,华北生态区次之,东北生态区最低,同时其变异幅度也比较大。由此表明我国甜菜不同生态区保存的甜菜种质资源材料具有相当高的异质性和丰富的遗传基础,这将有利于推动我国甜菜科研及育种事业的可持续发展。     

甜菜胞囊线虫抗性基因及遗传工程改良策略

甜菜胞囊线虫(Heterodera schachtii)是甜菜的重要病害之一,给甜菜生产造成了极大的损失。随着分子生物学和遗传工程技术的发展,采用遗传工程改良策略进行甜菜抗性品种选育是甜菜胞囊线虫防治中最经济、有效的方法。介绍了甜菜胞囊线虫的生育史及抗性机制,综述了甜菜胞囊线虫抗性基因的克隆和鉴定研究进展及甜菜胞囊线虫抗性育种的遗传工程改良策略,并提出今后甜菜胞囊线虫抗性育种的展望。     

Mitochondrial minisatellite polymorphisms in fodder and sugar beets reveal genetic bottlenecks associated with domestication

Historically, sugar beets were selected from fodder beets. We used mitochondrial minisatellite loci to analyze cytoplasmic genetic diversity in fodder beet and sugar beet. Among the 8 sugar beet accessions examined we identified 3 multi-locus haplotypes. These 3 haplotypes were a subset of 5 haplotypes identified among the 29 fodder beet accessions examined. All but one haplotype in fodder beet comprised, in turn, a subset of 12 haplotypes identified previously in leaf beets. Such apparent decreases in cytoplasmic genetic diversity must result from genetic bottlenecks associated with domestication and the ensuing breeding processes. We also detected the haplotype associated with the male-sterile Owen cytoplasm of sugar beet in the fodder beet gene pool. Furthermore, the presence of a 39 kDa protein associated with the Owen cytoplasm was confirmed in two fodder beet plants by Western blot analysis. These results lead us to speculate that the Owen cytoplasm may have originated in fodder beet, from which sugar beet was derived.     

Effects of beet cryptic virus infection on sugar beet in field trials

The effects of beet cryptic virus (BCV) infection on sugar beet crops were investigated in field trials in 1990. Two sugar beet breeding stock lines were screened for infection by BCV. Seed lots containing different proportions of seed infected with BCV1 & 2 were obtained by crossing the stock lines and used in field trials at five different sites. Five characteristics of the infected plants were assessed. BCV infection appeared to have no significant effects on the sugar beet crop at four locations which suffered from drought stress but significant effects were found at one site where the crop was grown on grade 1 land with good moisture retention properties. Root yield and sugar yield were reduced by up to 17% and 20%, respectively, by BCV infection.     

Molecular genetic investigation of sugar beet (Beta vulgaris L.)

Molecular genetic studies of sugar beet (Beta vulgaris L.) are reviewed as a basis for the development of genomics of this species. The methods used to study structural and functional genomics are considered. The results and their application to increase the efficiency of sugar beet breeding are discussed.     

Molecular genetic investigation of sugar beet (<Emphasis Type="Italic">Beta vulgaris</Emphasis> L.)

Molecular genetic studies of sugar beet (Beta vulgaris L.) are reviewed as a basis for the development of genomics of this species. The methods used to study structural and functional genomics are considered. The results and their application to increase the efficiency of sugar beet breeding are discussed.     

Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima

We present draft genome assemblies of Beta patula, a critically endangered wild beet endemic to the Madeira archipelago, and of the closely related Beta vulgaris ssp. maritima (sea beet). Evidence‐based reference gene sets for B. patula and sea beet were generated, consisting of 25 127 and 27 662 genes, respectively. The genomes and gene sets of the two wild beets were compared with their cultivated sister taxon B. vulgaris ssp. vulgaris (sugar beet). Large syntenic regions were identified, and a display tool for automatic genome‐wide synteny image generation was developed. Phylogenetic analysis based on 9861 genes showing 1:1:1 orthology supported the close relationship of B. patula to sea beet and sugar beet. A comparative analysis of the Rz2 locus, responsible for rhizomania resistance, suggested that the sequenced B. patula accession was rhizomania susceptible. Reference karyotypes for the two wild beets were established, and genomic rearrangements were detected. We consider our data as highly valuable and comprehensive resources for wild beet studies, B. patula conservation management, and sugar beet breeding research.     

Multiplexed,linkage group-specific SNP marker sets for rapid genetic mapping and fingerprinting of sugar beet (<Emphasis Type="Italic">Beta vulgaris</Emphasis> L.)

A set of single nucleotide polymorphism (SNP) markers has been developed for each of the nine linkage groups of sugar beet. Each set can monitor the polymorphic state at five to six linked marker loci. In each set, the loci selected for marker development are first amplified in a multiplexed reaction. These amplification products are the basis for sequence-specific elongation of primers adjacent to SNP positions. The extension step revealing SNP loci is based on fluorescently labelled nucleotides. In each set, primers developed to reveal SNP alleles differ in length to allow clear peak resolution in capillary electrophoresis. The nine linkage group (LG) –specific sets provide information on the polymorphism at a total of 52 SNP marker loci. Using the SNP-based tool, groups of concerned loci have been anchored to three different linkage maps of sugar beet. In a second experiment, sugar beet breeding lines have been fingerprinted. The use of the nine sets of LG-specific markers in sugar beet genetics and breeding is discussed. The information necessary to specify the 52 marker loci, as well as their map location, and all details concerning SNP assays, including allele type and nature of mutation, are reported.     

Glasshouse tests and field selection for heritable resistance to Myzus persicae in sugar beet

A technique is described to assess and select in the field for resistance to Myzus persicae in sugar beet. Lines developed by this method were aphid resistant when compared with commercial cultivars. The resistance was inherited by progeny lines. Variation between beet lines in glasshouse tests suggested segregation of a number of resistance genes with varying effects. Integration of selection for aphid-resistance and agronomic performance during beet breeding is discussed.     

Gehalt an Beet Necrotic Yellow Vein Virus (BNYVV) in der Hauptwurzel von Zuckerrübenpflanzen verschiedener Sorten und deren Leistung unter Rizomaniabefall im Feld

BNYVV concentration in the tap roots of sugar beet varieties grown in rhizomania-infested fields During plant development, the BNYVV concentration in several commercially available rhizomania-tolerant sugar beet varieties and one susceptible variety was examined as an index of the intensity of infection. The root weight, sugar content and sugar yield of the same varieties in fields naturally infested with rhizomania were also measured. Significant negative correlations were found between the average virus concentration in the tap root and yield parameters in infested fields. These were largely independent of the growth stage of beet plants used for virological investigations. However, the negative correlations between virus concentration and yield were not significant if rhizomania-tolerant varieties only were compared. The possibility that virus concentration might be used as a criterion for selection in addition to yield performance is discussed. This may lead to selection that is targeted more directly at rhizomania resistance and thereby accelerate breeding work.     

Time course and amplitude of DNA methylation in the shoot apical meristem are critical points for bolting induction in sugar beet and bolting tolerance between genotypes

An epigenetic control of vernalization has been demonstrated in annual plants such as Arabidopsis and cereals, but the situation remains unclear in biennial plants such as sugar beet that has an absolute requirement for vernalization. The role of DNA methylation in flowering induction and the identification of corresponding target loci also need to be clarified. In this context, sugar beet (Beta vulgaris altissima) genotypes differing in bolting tolerance were submitted to various bolting conditions such as different temperatures and/or methylating drugs. DNA hypomethylating treatment was not sufficient to induce bolting while DNA hypermethylation treatment inhibits and delays bolting. Vernalizing and devernalizing temperatures were shown to affect bolting as well as DNA methylation levels in the shoot apical meristem. In addition, a negative correlation was established between bolting and DNA methylation. Genotypes considered as resistant or sensitive to bolting could also be distinguished by their DNA methylation levels. Finally, sugar beet homologues of the Arabidopsis vernalization genes FLC and VIN3 exhibited distinct DNA methylation marks during vernalization independently to the variations of global DNA methylation. These vernalization genes also displayed differences in mRNA accumulation and methylation profiles between genotypes resistant or sensitive to bolting. Taken together, the data suggest that the time course and amplitude of DNA methylation variations are critical points for the induction of sugar beet bolting and represent an epigenetic component of the genotypic bolting tolerance, opening up new perspectives for sugar beet breeding.     

Genetic approaches to sustainable pest management in sugar beet (Beta vulgaris)

Sugar beet (Beta vulgaris) is an important arable crop, traditionally used for sugar extraction, but more recently, for biofuel production. A wide range of pests, including beet cyst nematode (Heterodera schachtii), root‐knot nematodes (Meloidogyne spp.), green peach aphids (Myzus persicae) and beet root maggot (Tetanops myopaeformis), infest the roots or leaves of sugar beet, which leads to yield loss directly or through transmission of beet pathogens such as viruses. Conventional pest control approaches based on chemical application have led to high economic costs. Development of pest‐resistant sugar beet varieties could play an important role towards sustainable crop production while minimising environmental impact. Intensive Beta germplasm screening has been fruitful, and genetic lines resistant to nematodes, aphids and root maggot have been identified and integrated into sugar beet breeding programmes. A small number of genes responding to pest attack have been cloned from sugar beet and wild Beta species. This trend will continue towards a detailed understanding of the molecular mechanism of insect–host plant interactions and host resistance. Molecular biotechnological techniques have shown promise in developing transgenic pest resistance varieties at an accelerated speed with high accuracy. The use of transgenic technology is discussed with regard to biodiversity and food safety.     

Genome-based prediction of test cross performance in two subsequent breeding cycles

Genome-based prediction of genetic values is expected to overcome shortcomings that limit the application of QTL mapping and marker-assisted selection in plant breeding. Our goal was to study the genome-based prediction of test cross performance with genetic effects that were estimated using genotypes from the preceding breeding cycle. In particular, our objectives were to employ a ridge regression approach that approximates best linear unbiased prediction of genetic effects, compare cross validation with validation using genetic material of the subsequent breeding cycle, and investigate the prospects of genome-based prediction in sugar beet breeding. We focused on the traits sugar content and standard molasses loss (ML) and used a set of 310 sugar beet lines to estimate genetic effects at 384 SNP markers. In cross validation, correlations >0.8 between observed and predicted test cross performance were observed for both traits. However, in validation with 56 lines from the next breeding cycle, a correlation of 0.8 could only be observed for sugar content, for standard ML the correlation reduced to 0.4. We found that ridge regression based on preliminary estimates of the heritability provided a very good approximation of best linear unbiased prediction and was not accompanied with a loss in prediction accuracy. We conclude that prediction accuracy assessed with cross validation within one cycle of a breeding program can not be used as an indicator for the accuracy of predicting lines of the next cycle. Prediction of lines of the next cycle seems promising for traits with high heritabilities.     

Phenotypic polymorphism and allele differentiation of isozymes in fodder beet,multigerm sugar beet and monogerm sugar beet

Summary Thirteen enzymes (MDH, SDH, LAP, PGM, PX, IDH, GPI, 6PGD, APH, GOT, GDH, ME and SOD) of 3 cultivated beet (B. vulgaris L.) gene pools, comprising 12 accessions of fodder beet, 11 of old multigerm sugar beet and 10 of modern monogerm sugar beet, were investigated using horizontal starch gel electrophoresis. Eleven accessions of primitive or wild B. vulgaris were also included for the comparison of isozymes. Variation in isozyme phenotypes was investigated to detect diversity in the three cultivated forms of beet. Phenotypic variation was observed in all except ME and SOD, which were monomorphic. A high degree of phenotypic polymorphism (Pj) was found in GDH, PGM, IDH, APH and MDH. Differences in phenotypic polymorphism in MDH, GPI and PX were recognized between fodder beet and both sugar beet groups. Average polymorphism for 13 enzymes in both sugar beets was significantly higher than that in fodder beet. For 13 enzymes, the existence of high isozyme diversity in both sugar beet gene pools was revealed. Allele frequencies in 13 alleles of five enzyme-coding loci, Lap, Px-1, Aph-1, Got-2 and Gdh-2, were investigated. New alleles, Px-1 ¹ and Got-2 ¹, were found in fodder beet accessions. No significant differences of average allele frequencies of five loci between fodder beet and both sugar beets were recognized. Several unique alleles and different isozyme phenotypes were observed in the accessions of B. vulgaris ssp. macrocarpa and ssp. adanensis. Future utilization of cultivated beet gene pools for sugar beet breeding is discussed from the viewpoint of genetic resources.     

Genotypic Variation for Drought Tolerance in Beta vulgaris

Insufficient soil moisture during summer months is now the majorcause of sugar beet yield losses in the UK. However, selectionfor increased drought tolerance has not been a breeding priorityuntil recently. Genetic variation for drought tolerance is anessential prerequisite for the development of more stress-tolerantvarieties, but commercial sugar beet varieties seem to havesimilar yield responses to drought. The objective of this studywas to assess the degree of genotypic variation for droughttolerance within a wide range of sugar beet germplasm and genebankaccessions within Beta. Thirty sugar beet genotypes were screenedunder field drought conditions, and putative drought tolerantand sensitive lines (in terms of yield reduction in polythene-coveredvs. irrigated plots) were identified. Significant genotype xwater treatment interactions were found for dry matter yieldand relative leaf expansion rate. Genotypic differences fordrought susceptibility index were also significant. Differentialsensitivity of seedling shoot growth to water deficit was examinedby comparing 350 genebank accessions in a simple growth chamberscreen. Methods of data management were devised to highlightlines for entry into subsequent field tests. The results ofthe field and seedling screens indicate that there is variationfor tolerance to water deficits within sugar beet and relatedtypes, and that there are lines that show greater drought tolerancethan selected commercial varieties. Divergent lines showingcontrasting behaviour should aid in the identification of keymorpho-physiological traits that confer drought tolerance.     

Estimating genetic variation in sugar beets and wild beets using pools of individuals.

The study describes the genetic structure in sugar beets and in wild beets (Beta vulgaris) using 30 RFLP markers. Samples consisting of pooled plant material of 100 individuals from each line and population were used to analyse 120 sugar beet breeding lines and 91 wild beet populations. Greater variation was found among the wild populations than among the breeding lines. Although the two major groups of breeding lines, monogerm and multigerm, had approximately equal amounts of genetic variation, in the monogerm group more of this variation was partitioned among the lines than within the lines. Furthermore, despite most of the variation being shared by the two groups, the two groups were found to be separated along the first two components in a principal component analysis. Computer simulations were carried out to evaluate the usefulness of the pooled-sample strategy employed in the investigation. These simulations showed the use of pooled samples to be a better alternative than that of analysing a few plants individually.     

Phytosulfokine stimulates cell divisions in sugar beet (Beta vulgaris L.) mesophyll protoplast cultures

The aim of this work was to improve plating efficiency of sugar beet mesophyll protoplast cultures. Preliminary experiments showed that cultures of good quality, viable protoplasts were obtained in rich media based on the Kao and Michayluk formulation and with the calcium alginate as an embedding matrix. Nevertheless, in these cultures cell divisions were either not observed or very seldom confirming earlier reported recalcitrance of sugar beet protoplasts. The recalcitrant status of these cultures was reversed upon application of exogenous phytosulfokine (PSK)—a peptidyl plant growth factor. The highest effectiveness of PSK was observed at 100 nM concentration. Plating efficiencies obtained in the presence of PSK reached approximately 20% of the total cultured cells. The stimulatory effect of phytosulfokine was observed for all tested breeding stocks of sugar beet. Our data indicate that PSK is a powerful agent able to overcome recalcitrance of plant protoplast cultures.