The Ecological Role of the Vaquita, Phocoena sinus, in the Ecosystem of the Northern Gulf of California

From an ecosystem management perspective, analysis of the functional roles of species is a challenge. It is valuable to determine which species are irreplaceable within a given community based on their contribution to the system’s organization. This study relates the emergent functional and structural indices of biological groups estimated from a trophic model of the Northern Gulf of California to identify the roles of these groups in the ecosystem context, with a particular focus on the role of the vaquita, an endemic porpoise in critically endangered status. The simulation of removing each group allowed the analysis of the removal’s functional effect on the ecosystem’s global attributes and organization (based on Ulanowicz’s ascendency concept). Groups from lower trophic levels (TL) were more related to complexity indicators, suggesting their contribution to the organization and structure of energy flows in the food web. Groups from intermediate TL had higher values of structural indexes, indicating their function in the control of flows throughout the network. The vaquita along with other marine mammals, aquatic birds, and some species of fish with a high TL contribute in a similar way to the order (for example, ascendency/capacity-of-development ratio) of the system, showing a relatively high value of ascendency (contribution of the group to the organization inherent to the ecosystem) and the change in ecosystem ascendency when they were removed. The vaquita, like marine and coastal birds, plays a small role in the ecosystem. But like them, it does contribute substantially to ecosystem organization. This study thus provides information potentially useful for management in understanding the species’ role and in reducing uncertainty in decision-making.     

Conservation of the vaquita Phocoena sinus

• 1 The vaquita Phocoena sinus is a small porpoise that is endemic to the northern Gulf of California, Mexico. It is the most critically endangered marine small cetacean in the world. The most precise estimate of global abundance based on a 1997 survey is 567 (95% CI 177–1073).
• 2 Vaquitas mainly live north of 30°45′N and west of 114°20′W. Their ‘core area’ consists of about 2235 km² centred around Rocas Consag, 40 km east of San Felipe, Baja California. Genetic analyses and population simulations suggest that the vaquita has always been rare, and that its extreme loss of genomic variability occurred over evolutionary time rather than being caused by human activities.
• 3 Gill nets for fish and shrimp cause very high rates of by‐catch (entanglement) of vaquitas. Estimates of bycatch rates are from 1993–94 and refer to one of three main fishing ports: 84 per year (95% CI 14–155) using only data collected by observers and 39 per year (95% CI 14–93) using combined data from observers and interviews with fishermen. Boats from other ports may experience similar rates, and the total is probably well above what would be sustainable.
• 4 Other less well‐characterized and longer‐term risk factors include the potential for disturbance by trawling to affect vaquita behaviour, and the uncertain effects of dam construction on the Colorado River and the resultant loss of freshwater input to the upper Gulf. However, entanglement is the clearest and most immediate concern.
• 5 Progress towards reducing entanglement has been slow in spite of efforts to phase out gill nets in the vaquita’s core range, and the development of schemes involving compensation for fishermen. The Biosphere Reserve in the northern Gulf has fallen far short of its potential for vaquita conservation. On 29 December 2005, the Mexican Ministry of Environment declared a Vaquita Refuge that contains within its borders the positions of approximately 80% of verified vaquita sightings. In the same decree, the state governments of Sonora and Baja California were offered $1 million to compensate affected fishermen. The effectiveness of this major initiative remains to be seen.
• 6 The vaquita’s survival does not depend on more or better science but on improved management. As a funding priority, implementation of conservation measures and evaluation of their effectiveness should come ahead of more surveys or improved estimation of by‐catch.

     

An Ecosystem Model for Exploring Lake Restoration Effects on Fish Communities and Fisheries in Florida

Developing quantitative ecosystem–scale expectations of habitat restoration projects and examining trade‐offs associated with alternative approaches has been a challenge for restoration ecology. Many of the largest freshwater lake restoration projects have occurred in Florida to remediate degradation to vegetated littoral habitats resulting from stabilized water levels, but effects across lake food‐webs have not been assessed. We developed an ecosystem model using Ecopath with Ecosim and Ecospace for a generalized large, eutrophic Florida Lake to explore how simulated restoration activities could influence fish communities with emphasis on sport fish abundance. We modeled three habitat restoration scenarios: (1) “no control,” (2) a “10‐year control” that restored littoral habitat every 10 years, and (3) a “combined control” scenario that restored littoral habitat every 10 years with maintenance controls between 10‐year periods. Our “combined control” scenario provided the largest long‐term habitat restoration benefits for sport fish abundance and the fisheries they support. In Ecospace, we simulated a littoral habitat restoration project that reduced lake‐wide tussock coverage from 30 to 15%. Ecospace predicted positive benefits to sport fish and fisheries following the restoration simulation and highlighted the importance of habitat edge effects, spatial design of habitat restoration projects, and sampling designs for evaluating restoration projects.     

Life history of the vaquita, Phocoena sinus (Phocoenidae, Cetacea)

The vaquita, Phocoena sinus , is the most endangered marine cetacean primarily due to incidental mortality in fishing nets. We examined a sample of 56 vaquitas to study the life history of this poorly known species. The age structure was bimodal, with 62% of the specimens from 0-2 years and 31% from 11-16 years; the sample contained no specimens from ages 3-6 years. The oldest individual was estimated to be 21 years old. All specimens less than three years old were sexually immature and all greater than six years old were mature. The asymptotic length of females (140.6 cm) was significantly greater than that of males (134.9 cm), although no difference was detected in asymptotic girth or body mass. Reproduction is synchronous; births occurred from late February to early April and maximum testes activity occurred from mid-March through to at least mid-April. Our observations from this small sample suggest that the calving interval is greater than one year. The sample was too small for many quantitative analyses, although it appears that lifespan, patterns of growth, age at sexual maturation, seasonal reproduction, and large testis size are similar to the harbour porpoise, P. phocoena , in a highly exploited and well-studied population from the Bay of Fundy. A significant difference, however, is that harbour porpoise females give birth annually, indicating that the rate of increase in the vaquita population is likely to be lower than that in the harbour porpoise. Without immediate cessation of fishing pressure, this fragile population will collapse, resulting in extinction of the vaquita.     

Seroprevalences Against Paracoccidioides cetii: A Causative Agent for Paracoccidiomycosis Ceti (PCM-C) and Coccidioides posadasii; for Coccidioidomycosis (CCM) in Dall's Porpoise (Phocoenoides dalli) and Harbor Porpoise (Phocoena phocoena) Stranded at Hokkaido,Japan

Mycopathologia - Paracoccidiodomycosis ceti (PCM-C) is a zoonotic mycosis characterized by chronic granulomatous cutaneous lesions in cetaceans. It is distributed worldwide and is caused by an...     

Population Genetic Structure of the Yangtze Finless Porpoise (Neophocaena phocaenoides asiaeorientalis): Implications for Management and Conservation

Understanding the population genetic structure is a prerequisite for conservation of a species. The degree of genetic variability characteristic of the mitochondrial DNA control region has been widely exploited in studies of population genetic structure and can be useful in identifying meaningful population subdivisions. To estimate the genetic profile of the Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis), an endangered freshwater population endemic to China, the complete mtDNA control region was examined in 39 individuals belonging to seven different stocks inhabiting the middle and lower reaches of the Yangtze River. Very low genetic diversity was found (nucleotide diversity 0.0011± 0.0002 and haplotypic diversity 0.65± 0.05). The mtDNA genetic pattern of the Yangtze population appears to indicate a founder event in its evolutionary history and to support the marine origin for this population. Analyses by F_st and Φ_st yielded statistically significant population genetic structure (F_st = 0.44, P < 0.05; Φ_st = 0.36, P < 0.05). These results may have significant implications for the management and conservation of the Yangtze finless porpoise in the future.     

Exploring Linkages between Abiotic Oceanographic Processes and a Top-trophic Predator in an Antarctic Ecosystem

Climatic variation affects the physical and biological components of ecosystems, and global-climate models predict enhanced sensitivity in polar regions, raising concern for Antarctic animal populations that may show direct responses to changes in sea-ice distribution and extent, or indirect responses to changes in prey distribution and abundance. Here, we show that over a 30-year period in the Ross Sea, average weaning masses of Weddell seals, Leptonychotes weddellii, varied strongly among years and were correlated to large-scale climatic and oceanographic variations. Foraging success of pregnant seals (reflected by weaning mass the following pupping season) increased during summers characterized by reduced sea-ice cover and positive phases of the southern oscillation. These results demonstrate a correlation between environmental variation and an important life history characteristic (weaning mass) of an Antarctic marine mammal. Understanding the mechanisms that link climatic variation and animal life history characteristics will contribute to understanding both population dynamics and global climatic processes. For the world’s most southerly distributed mammal species, the projected trend of increasing global climate change raises concern because increasing sea-ice trends in the Ross Sea sector of Antarctica will likely reduce populations due to reduced access to prey as expressed through declines in body condition and reproductive performance.     

Sexual dimorphism and developmental patterns in the external morphology of the vaquita,Phocoena sinus

A total of 56 vaquitas (Phocoena sinus) were examined to evaluate their sexual dimorphism and isometric and/or allometric growth in 35 external characteristics. Absolute and relative (to total length) measurements and growth rates were compared between sexually immature and mature females and males. T‐tests and analysis of variance (ANOVA) and covariance (ANCOVA) were used to evaluate sexual dimorphism. Sexual dimorphism in the vaquita was detected in the total length, head region (from blowhole to tip of upper jaw), anterior section of the body (from dorsal fin to tip of upper jaw), dorsal fin and the genital and anal regions. Fluke width is relatively larger in mature males than immature males, but in females this relative metric does not change during their development. In addition, males present a higher dorsal fin. These somatic changes are probably related to the swimming capacity (speed, agility, maneuvering) during the breeding season and/or foraging activities. A linear model of growth was used to determine possible proportional changes with respect to total body length through the development of 33 external characteristics. The anterior region of the body and the flippers were relatively larger in immature individuals than in mature ones.     

Reproduction in the common porpoise (Phocoena phocoena) of the North Atlantic

Examination of the reproductive organs from 137 Common porpoises ( Phocoena phocoena ) from the Gulf of St Lawrence, the Bay of Fundy and British waters has enabled observations to be made on reproductive events. Birth in Canadian waters occurs mainly in June and July: mating takes place from june to August . The evidence indicates that females do not become pregnant every year. Birth length is 80 to 90cm; juveniles attain a length of 100 to 110 cm after three to four months. Sexual maturity is reached at a length of about 133 cm in males and 145 cm in females, probably in their third or fourth year. The corpus luteum persists throughout gestation and retrogresses from their histological characteristics. One kind possesses much acellular material and is probably a corpus albicans gravitadionis; the other consists of a mass of obliterated vessels and is the remains either of a corpus luteum of an infertile ovulation or of a lutealized follicle. Evidence indicates that there is seasonal testicular activity, reaching a maximum during July and subsiding in late August.     

Additional notes on the food of the Common porpoise (Phocoena phocoena)

Investigation of the food (through stomach contents) of Common porpoises caught in Scottish waters, discussed in an earlier paper, has been continued at the Marine Laboratory. The results confirm the earlier conclusions and stress the prominence of fish in the food. They also indicate the comparatively small size of the fish eaten and the predominantly pelagic or semi-pelagic nature of the majority of species in the diet.     

Exploring the Leaf Beetle Fauna (Coleoptera: Chrysomelidae) of an Ecuadorian Mountain Forest Using DNA Barcoding

Background

Tropical mountain forests are hotspots of biodiversity hosting a huge but little known diversity of insects that is endangered by habitat destruction and climate change. Therefore, rapid assessment approaches of insect diversity are urgently needed to complement slower traditional taxonomic approaches. We empirically compare different DNA-based species delimitation approaches for a rapid biodiversity assessment of hyperdiverse leaf beetle assemblages along an elevational gradient in southern Ecuador and explore their effect on species richness estimates.

Methodology/Principal Findings

Based on a COI barcode data set of 674 leaf beetle specimens (Coleoptera: Chrysomelidae) of 266 morphospecies from three sample sites in the Podocarpus National Park, we employed statistical parsimony analysis, distance-based clustering, GMYC- and PTP-modelling to delimit species-like units and compared them to morphology-based (parataxonomic) species identifications. The four different approaches for DNA-based species delimitation revealed highly similar numbers of molecular operational taxonomic units (MOTUs) (n = 284–289). Estimated total species richness was considerably higher than the sampled amount, 414 for morphospecies (Chao2) and 469–481 for the different MOTU types. Assemblages at different elevational levels (1000 vs. 2000 m) had similar species numbers but a very distinct species composition for all delimitation methods. Most species were found only at one elevation while this turnover pattern was even more pronounced for DNA-based delimitation.

Conclusions/Significance

Given the high congruence of DNA-based delimitation results, probably due to the sampling structure, our study suggests that when applied to species communities on a regionally limited level with high amount of rare species (i.e. ~50% singletons), the choice of species delimitation method can be of minor relevance for assessing species numbers and turnover in tropical insect communities. Therefore, DNA-based species delimitation is confirmed as a valuable tool for evaluating biodiversity of hyperdiverse insect communities, especially when exact taxonomic identifications are missing.     

Trade-Offs between Growth Rate,Tree Size and Lifespan of Mountain Pine (Pinus montana) in the Swiss National Park

A within-species trade-off between growth rates and lifespan has been observed across different taxa of trees, however, there is some uncertainty whether this trade-off also applies to shade-intolerant tree species. The main objective of this study was to investigate the relationships between radial growth, tree size and lifespan of shade-intolerant mountain pines. For 200 dead standing mountain pines (Pinus montana) located along gradients of aspect, slope steepness and elevation in the Swiss National Park, radial annual growth rates and lifespan were reconstructed. While early growth (i.e. mean tree-ring width over the first 50 years) correlated positively with diameter at the time of tree death, a negative correlation resulted with lifespan, i.e. rapidly growing mountain pines face a trade-off between reaching a large diameter at the cost of early tree death. Slowly growing mountain pines may reach a large diameter and a long lifespan, but risk to die young at a small size. Early growth was not correlated with temperature or precipitation over the growing period. Variability in lifespan was further contingent on aspect, slope steepness and elevation. The shade-intolerant mountain pines follow diverging growth trajectories that are imposed by extrinsic environmental influences. The resulting trade-offs between growth rate, tree size and lifespan advance our understanding of tree population dynamics, which may ultimately improve projections of forest dynamics under changing environmental conditions.     

Assessing the Conservation Status of an Iberian Moth Using Pseudo-Absences

ABSTRACT Knowing the distribution of endangered species is of substantial importance for conservation. We considered a useful approach for modeling species distribution when managing information from atlases and museums but when absence data is not available. By modeling the distribution for Graellsia isabelae, a threatened moth species, we assessed its current conservation status and identified its most relevant distribution explanatory variables using Geographic Information System and Generalized Linear Models. The distribution model was built from 136 occurrence records and 25 digitized explanatory variables at a 10 × 10 km resolution. Model predictions from logistic-regressed pseudo-absences, obtained from a presence-only method (Ecological-Niche Factor Analysis), explained 96.23% of the total deviance. We found that the best predictor variables were summer precipitation, aridity, and mean elevation. With respect to host plants, the presence of G. isabelae associated mainly with Scots pine (Pinus sylvestris) and Austrian pine (P. nigra). The finding of 8 areas, exclusively in the eastern Iberian territory, and a larger unoccupied habitat in the western Iberian Peninsula indicates that this species is probably not in equilibrium with its environment by historical factors. Sites of Community Importance under protection do not seem sufficient to maintain current populations, necessitating the protection of suitable neighboring habitats. Our methodology is useful to manage the conservation status of species for which reliable absence data is not available. It is possible to determine those variables that most affect the distribution of species as well as the potential suitable areas with the purpose of evaluating protected areas, connectivity among populations, and possible reintroductions.     

The Role of Sharks and Longline Fisheries in a Pelagic Ecosystem of the Central Pacific

The increased exploitation of pelagic sharks by longline fisheries raised questions about changes in the food webs that include sharks as apex predators. We used a version of Ecopath/Ecosim models to evaluate changes in trophic interactions due to shark exploitation in the Central North Pacific. Fisheries targeted on blue sharks tend to produce compensatory responses that favor other shark species and billfishes, but they have only modest effects on the majority of food web components. Modest levels of intraguild predation (adult sharks that eat juvenile sharks) produce strong, nonlinear responses in shark populations. In general, analysis of the Central North Pacific model reveals that sharks are not keystone predators, but that increases in longline fisheries can have profound effects on the food webs that support sharks. Received 19 April 2001; accepted 2 October 2001.     

Timing of epiphyseal development in the flipper skeleton of the harbour porpoise (Phocoena phocoena) as an indicator of paedomorphosis

Epiphyseal development was investigated on X‐rays of flippers from 158 harbour porpoises from Danish waters. Development followed a proximodistal pattern similar to what is known in other cetacean species. Ossification of epiphyses was rare in the phalanges of the first and fifth digits and in the more distal phalanges of the second, third and fourth digits. Along with the morphology of the first metacarpal and the more distal phalanges this suggested paedomorphosis relative to delphinids. Male and female porpoises showed similar progression of epiphyseal development until approximately the sixth year. From then on, female porpoises showed more progressed development than males. This suggests a higher level of paedomorphosis in the male porpoise. The mechanism behind phocoenid paedomorphosis seems to be progenesis, probably as an adaptation towards a high reproductive rate relative to the delphinids.     

Isolation and characterization of Brucella from the lungworms of a harbor porpoise (Phocoena phocoena)

Adult female nematodes identified as Pseudalius inflexus were collected from the lungs of a juvenile male harbor porpoise (Phocoena phocoena) found dead on a beach in Cornwall, UK. Classic and molecular typing methods, immunologic and electron microscopy immunolabeling techniques, provided evidence of Brucella sp. infection within the uterine tissue of nematodes of this marine mammal. This finding presents further evidence to suggest parasites should be considered as a potential means of transfer of bacterial infection in marine mammals and highlights the zoonotic implications for humans exposed to marine mammals through occupation or leisure.     

Morphology and microanatomy of harbor porpoise (Phocoena phocoena) dorsal fin tubercles

The unique pattern of small tubercles on the leading edge of the dorsal fins of harbor porpoises (Phocoena phocoena) has been widely noted in the literature, though their structure or function has never been conclusively identified. We examined external morphology and microanatomy of the tubercles for further understanding of the nature of the tubercles. Measurements were taken of height and peak‐to‐peak distance of the tubercles using scaled photographs. Mean tubercle height was standardized as a percentage of the dorsal fin height and ranged from 0.63 to 0.87%. Mean peak‐to‐peak distance ranged from 4.2 ± 2.0 to 5.6 ± 2.0 mm. The microstructure analysis of the dorsal fin leading edge, trailing edge and tubercles revealed an epidermal thickness of 0.7–2.7 mm with the thickest epidermis at the tubercular apex. The epidermis contained three distinct strata (=layers), including the stratum corneum, spinosum, and basale. The stratum corneum was significantly thickened in tubercles, over four times thicker than in the leading or trailing edge of the fin. The stratum spinosum, composed of lipokeratinocytes and lamellar oil bodies, was significantly thinner in the trailing edge than in the other two sites. There was no significant difference in the stratum basale among the three sites. Volume fraction of lipokeratinocytes was significantly higher at the sides of the leading edge and the apex of the tubercles, while volume fraction of lamellar oil bodies was significantly lower at the apex of the tubercles. Though the function of the tubercles is unknown, their position, hardened structure and increased epidermal stratum corneum suggest that they may have hydrodynamic importance. J. Morphol., 2011. © 2010 Wiley‐Liss, Inc.