Surprising lack of sensitivity of biochemical limitation of photosynthesis of nine tree species to open‐air experimental warming and reduced rainfall in a southern boreal forest

Photosynthetic biochemical limitation parameters (i.e., V_cmax, J_max and J_max:V_cmax ratio) are sensitive to temperature and water availability, but whether these parameters in cold climate species at biome ecotones are positively or negatively influenced by projected changes in global temperature and water availability remains uncertain. Prior exploration of this question has largely involved greenhouse based short‐term manipulative studies with mixed results in terms of direction and magnitude of responses. To address this question in a more realistic context, we examined the effects of increased temperature and rainfall reduction on the biochemical limitations of photosynthesis using a long‐term chamber‐less manipulative experiment located in northern Minnesota, USA. Nine tree species from the boreal‐temperate ecotone were grown in natural neighborhoods under ambient and elevated (+3.4°C) growing season temperatures and ambient or reduced (≈40% of rainfall removed) summer rainfall. Apparent rubisco carboxylation and RuBP regeneration standardized to 25°C (V_cmax25°C and J_max25°C, respectively) were estimated based on AC_i curves measured in situ over three growing seasons. Our primary objective was to test whether species would downregulate V_cmax25°C and J_max25°C in response to warming and reduced rainfall, with such responses expected to be greatest in species with the coldest and most humid native ranges, respectively. These hypotheses were not supported, as there were no overall main treatment effects on V_cmax25°C or J_max25°C (p > .14). However, J_max:V_cmax ratio decreased significantly with warming (p = .0178), whereas interactions between warming and rainfall reduction on the J_max25°C to V_cmax25°C ratio were not significant. The insensitivity of photosynthetic parameters to warming contrasts with many prior studies done under larger temperature differentials and often fixed daytime temperatures. In sum, plants growing in relatively realistic conditions under naturally varying temperatures and soil moisture levels were remarkably insensitive in terms of their J_max25°C and V_cmax25°C when grown at elevated temperatures, reduced rainfall, or both combined.     

A computer system for the analysis of molecular evolution modes of protein-encoding genes (SAMEM): The relationship between molecular evolution and phenotypic traits

An online computer system for the analysis of the molecular evolution modes of genes and proteins has been developed (SAMEM: ). SAMEM computations are based on the ratio of radical to conservative amino acid substitutions (K _R /K _C ), the rate of amino acid substitutions in the course of protein evolution (V _P ), and statistical relationships between the evolutionary changes of all known amino acid properties and particular features of an organism. The system facilitates the interpretation of the results of K _R /K _C and V _P analyses.     

Action potentials inAcetabularia: Measurement and simulation of voltage-gated fluxes

Summary Amounts and temporal changes of the release of the tracer ions K⁺ (⁸⁶Rb⁺),²²Na⁺, and³⁶Cl^– as well as of H⁺ in the course of action potentials inAcetabularia have been recorded. New results and model calculations confirm in quantitative terms the involvement of three major ion transport systemsX in the plasmalemma: Cl^– pumps, K⁺ channels, and Cl^– channels (which are marked in the following by the prefixes,P, K andC) with their equilibrium voltages _X V _e and voltage/time-dependent conductances, which can be described by the following, first approximation. Let the maximum (ohmic) conductance of each of the three populations of transporter species be about the same (_P L, _KL,_C L=1) but voltage gating be different: the pump ( _{p V e} about –200 mV) being inactivated (open,oclosed,c) at positive going transmembrane voltages,V _m; the K⁺ channels (_K V _e about –100 mV) are inactivated at negative goingV _m; and the Cl^– channels (_C V _e: around 0 mV), which are normally closed (c) at a restingV _m (near_PV_e) go through an intermediate open (o) state at more positiveV _m before they enter a third shut state (s) in series. Model calculations, in which voltage sensitivities are expressed by the factorf=exp(V _mF/(2RT)), simulate, the action potential fairly well with the following parameters (_PK_co10/f ks^–1,_PK_oc1000·f ks^–1,_KK_co200·f ks^–1,_Kk_oc2/f ks^–1,_cK_co500·f ks^–1,_CK_oc5/f ks^–1,_CK_so0.1/f ks^–1,_Ck_os20·f ks^–1). It is also shown that the charge balance for the huge transient Cl^– efflux, which frequently occurs during an action potential, can be accounted for by the observation of a corresponding release of Na⁺.     

Retrospective analysis of biochemical limitations to photosynthesis in 49 species: C4 crops appear still adapted to pre-industrial atmospheric [CO2]

Leaf CO₂ uptake (A) in C₄ photosynthesis is limited by the maximum apparent rate of PEPc carboxylation (V_pmax) at low intercellular [CO₂] (c_i) with a sharp transition to a c_i-saturated rate (V_max) due to co-limitation by ribulose-1:5-bisphosphate carboxylase/oxygenase (Rubisco) and regeneration of PEP. The response of A to c_i has been widely used to determine these two parameters. V_max and V_pmax depend on different enzymes but draw on a shared pool of leaf resources, such that resource distribution is optimized, and A maximized, when V_max and V_pmax are co-limiting. We collected published A/c_i curves in 49 C₄ species and assessed variation in photosynthetic traits between phylogenetic groups, and as a function of atmospheric [CO₂]. The balance of V_max-V_pmax varied among evolutionary lineages and C₄ subtypes. Operating A was strongly V_max-limited, such that re-allocation of resources from V_pmax towards V_max was predicted to improve A by 12% in C₄ crops. This would not require additional inputs but rather altered partitioning of existing leaf nutrients, resulting in increased water and nutrient-use efficiency. Optimal partitioning was achieved only in plants grown at pre-industrial atmospheric [CO₂], suggesting C₄ crops have not adjusted to the rapid increase in atmospheric [CO₂] of the past few decades.     

Separation of supercoiled and open-circular plasmid DNA by liquid-liquid counter-current chromatography

We report for the first time the use of liquid-liquid counter-current chromatography (CCC) for the preparative scale fractionation of plasmid DNA. Almost complete fractionation of supercoiled and open circular plasmid DNA (6.9 kb) could be achieved using a phase system comprising 12.5% (w/w) PEG 600 and 18% (w/w) K₂HPO₄. Experiments were carried out on a Brunel J-type CCC machine (100 ml PTFE coil) at a mobile phase flow rate of 0.5 ml min^{– 1} and a rotational speed of 600 rpm. Compared to conventional HPLC techniques the capacity of CCC is not limited by the surface area of resin available for adsorption. Symbols: C _b, Concentration of plasmid in lower phase (g ml^–1); C _t, Concentration of plasmid in upper phase (g ml^–1); CV, Total volume of mobile phase present in the coil and connecting leads (ml); K, Equilibrium solute partition coefficient (K=C _t/C _b); OC, Open circular plasmid; SC, Supercoiled plasmid; S _f, Percentage stationary phase retention (S _f=V _s/V _c); t _s, Time for phase separation (s); V _b, Volume of bottom phase (ml); V _c, Coil volume (ml); V _m, Volume of mobile phase present in coil at equilibrium (ml); V _r, Volume ratio of two phases (V _r=V _t/V _b); V _s, Volume stationary phase present in coil at equilibrium (ml); V _t, Volume of top phase (ml); V _tot, Total volume of phase system (ml).     

Single-Channel Monitoring of Reversible L-Type Ca Channel CaVα1-CaVβ Subunit Interaction

Voltage-dependent Ca²⁺ channels are heteromultimers of Ca_Vα₁ (pore), Ca_Vβ- and Ca_Vα₂δ-subunits. The stoichiometry of this complex, and whether it is dynamically regulated in intact cells, remains controversial. Fortunately, Ca_Vβ-isoforms affect gating differentially, and we chose two extremes (Ca_Vβ_1a and Ca_Vβ_2b) regarding single-channel open probability to address this question. HEK293α_1C cells expressing the Ca_V1.2 subunit were transiently transfected with Ca_Vα₂δ1 alone or with Ca_Vβ_1a, Ca_Vβ_2b, or (2:1 or 1:1 plasmid ratio) combinations. Both Ca_Vβ-subunits increased whole-cell current and shifted the voltage dependence of activation and inactivation to hyperpolarization. Time-dependent inactivation was accelerated by Ca_Vβ_1a-subunits but not by Ca_Vβ_2b-subunits. Mixtures induced intermediate phenotypes. Single channels sometimes switched between periods of low and high open probability. To validate such slow gating behavior, data were segmented in clusters of statistically similar open probability. With Ca_Vβ_1a-subunits alone, channels mostly stayed in clusters (or regimes of alike clusters) of low open probability. Increasing Ca_Vβ_2b-subunits (co-)expressed (1:2, 1:1 ratio or alone) progressively enhanced the frequency and total duration of high open probability clusters and regimes. Our analysis was validated by the inactivation behavior of segmented ensemble averages. Hence, a phenotype consistent with mutually exclusive and dynamically competing binding of different Ca_Vβ-subunits is demonstrated in intact cells.     

Comparison of parameters estimated from A/Ci and A/Cc curve analysis

The parameters estimated from traditional A/C _i curve analysis are dependent upon some underlying assumptions that substomatal CO₂ concentration (C _i) equals the chloroplast CO₂ concentration (C _c) and the C _i value at which the A/C _i curve switches between Rubisco- and electron transport-limited portions of the curve (C _i-t) is set to a constant. However, the assumptions reduced the accuracy of parameter estimation significantly without taking the influence of C _i-t value and mesophyll conductance (g _m) on parameters into account. Based on the analysis of Larix gmelinii’s A/C _i curves, it showed the C _i-t value varied significantly, ranging from 24 Pa to 72 Pa and averaging 38 Pa. t-test demonstrated there were significant differences in parameters respectively estimated from A/C _i and A/C _c curve analysis (p<0.01). Compared with the maximum ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) carboxylation rate (V_cmax), the maximum electron transport rate (J_max) and J_max/V_cmax estimated from A/C _c curve analysis which considers the effects of g _m limit and simultaneously fits parameters with the whole A/C _c curve, mean V_cmax estimated from A/C _i curve analysis (V_cmax-C _i) was underestimated by 37.49%; mean Jmax estimated from A/C _i curve analysis (J_max-C _i) was overestimated by 17.8% and (J_max-C _i)/(V_cmax-C _i) was overestimated by 24.2%. However, there was a significant linear relationship between V_cmax estimated from A/C _i curve analysis and V_cmax estimated from A/C _c curve analysis, so was it J_max (p<0.05).     

Polymorphism of T-cell receptor genes among laboratory and wild mice: Diverse origins of laboratory mice

Southern blots of genomic DNA from 23 strains of laboratory mice and 19 individual wild mice were examined for restriction fragment length polymorphisms in their loci encoding the T-cell receptors (Tcr): the constant regions of the α, β, and γ chains (C _α,C _β, andC _γ) and a variable region family of the β chain (V _β8). Only a few polymorphisms were observed for each locus in the laboratory mice after using three restriction enzymes,Bam HI,Eco RI, andHind III. All the laboratory mice examined fall into one of two types for theC _α,C _β andV _β8 loci and one of three types for theC _γ. These types are found in some of the wild mice studied, indicating that they were already present in the founder mice of laboratory mouse strains. In contrast, theTcr genes are highly polymorphic among wild mice. Analysis of the polymorphisms in these loci suggests that laboratory mice have inherited their genes not only fromMus musculus domesticus, but also from other subspecies, and much more than previously believed from Asian subspecies.     

Mathematical models for mixing in deep-jet bioreactors: Calculation of parameters

The macroscopic mathematical model based on compartments with ideal mixing zones and tanks-in series was evaluated. Based on the experimental data obtained in a 300 dm³ pilot reactor and the dependence of mixing time on the volume of liquid phase, we have found mathematical relations between the ratio of vessel diameter to liquid level, adjustable parameters of model and the mixing time.List of Symbols V dm³ total volume of bioreactor - V _g dm³ total volume of liquid - V ₁ dm³ volume of ideally mixed zone in the vessel - V ₂ dm³ volume of macromixer in inner circulation flows - V ₃ dm³ volume of liquid phase in the pump - V ₄ dm³ volume of liquid phase in the pipe between the vessel and the pump - V ₅ dm³ volume of liquid phase in the pipe between the pump and air input system included falling jet - V _LT dm³ volume of liquid in the tank - V _LC dm³ volume of liquid in the circulation system - F _E dm³/s inner volumetric circulation flow rate across the macromixers - F _cir dm³/s external volumetric circulation flow rate, pumping capacity - t _A s time interval of the pulse application - t _AA s time point of the pulse application related to the free choosen starting point of the experiment - t _m s mixing time - t _c s circulation time - t _end s end time of simulation - C _*,* kg/m³ concentration of tracer in the indicated compartment - C ₀ kg/m³ concentration of the tracer before the injection - C _t kg/m³ concentration of the tracer at the indicated time - C kg/m³ theoretical concentration of the full mixed tracer - C _sim kg/m³ calculated concentration of tracer during numerical integration method - i index of an arbitrary tank - D _T m diameter of bioreactor - D 1/s dilution rate - H _L m level of liquid in the unaerated vessel - vector of inhomogenities     

Phosphoenolpyruvate Carboxylase Purified from Leaves of C3, C4, and C3-C4 intermediate species of Alternanthera: Properties at Limiting and Saturating Bicarbonate

Phosphoenolpyruvate carboxylase (PEPC) was purified from leaves of four species of Alternanthera differing in their photosynthetic carbon metabolism: Alternanthera sessilis (C₃), A. pungens (C₄), A. ficoides and A. tenella (C₃-C₄ intermediates or C₃-C₄). The activity and properties of PEPC were examined at limiting (0.05 mM) or saturating (10 mM) bicarbonate concentrations. The V_max as well as K_m values (for Mg²⁺ or PEP) of PEPC from A. ficoides and A. tenella (C₃-C₄ intermediates) were in between those of C₃ (A. sessilis) and C₄ species (A. pungens). Similarly, the sensitivity of PEPC to malate (an inhibitor) or G-6-P (an activator) of A. ficoides and A. tenella (C₃-C₄) was also of intermediate status between those of C₃ and C₄ species of A. sessilis and A. pungens, respectively. In all the four species, the maximal activity (V_max), affinity for PEP (K_m), and the sensitivity to malate (K_I) or G-6-P (K_A) of PEPC were higher at 10 mM bicarbonate than at 0.05 mM bicarbonate. Again, the sensitivity to bicarbonate of PEPC from C₃-C₄ intermediates was in between those of C₃- and C₄-species. Thus the characteristics of PEPC of C₃-C₄ intermediate species of Alternanthera are intermediate between C₃- and C₄-type, in both their kinetic and regulatory properties. Bicarbonate could be an important modulator of PEPC, particularly in C₄ plants. This revised version was published online in August 2006 with corrections to the Cover Date.     

Intrinsic differences in the perturbing ability of alkanols in bilayer: Action of phospholipase A2 on the alkanol-modified phospholipid bilayer

Summary The kinetic parameters for the steady-state rate of hydrolysis of egg phosphatidylcholine in multilamellar vesicles by bee venom phospholipase A₂ are measured in the presence of 27 alkanols and several organic solvents. In general, small nonpolar solutes like enflurane, tetrahydrofuran, benzene, chloroform and diethylether do not promote the hydrolysis of multilamellar vesicles. The rate of hydrolysis shows a biphasic dependence upon the alkanol concentration for all higher (C₅–C₉) alcohols examined, i.e., an optimal rate of hydrolysis is observed at a characteristic concentration for each alcohol. The alkanol to lipid mole ratio (D/L ratio) in the bilayer at the peak activating concentration of an alkanol was computed from its bilayer/water partition coefficient. The branched chain alcohols induce peak activation of hydrolysis at lowerD/L ratios in the bilayer than the corresponding straight chain analogs. Similarly, the longer chainn-alkanols at peak activating concentration have a lowerD/L ratio than the corresponding lower alcohols. Both theK _m andV _m for phosphatidylcholine increase as a function of the chain length of the activating alcohol. These kinetic parameters also depend upon the position of the substituents on the activating alcohols. Both theD/L ratio andV _m for an alcohol are found to change with the cross-sectional area of the activating alcohol across its long axis: alcohols with a more asymmetric cross-section exhibit higherV _m and a lowerD/L ratio. Such correlations ofV _m andD/L ratio with the molecular parameters of the alkanols are interpreted to suggest that the accessibility of the substrate molecule in the bilayer to the phospholipase is modulated by the free space introduced by the alkanols in the bilayer.Effect of tetradecane derivatives and A₂C (a membrane fluidizing agent) on the phase transition characteristics of DPPC bilayers, and their susceptibility to phospholipase A₂ from bee venom and pig pancreas is also reported. These solutes cause a broadening of the transition profile and reduce the size of the cooperative unit and the enthalpy of transition. These effects depend upon the mole fraction of a solute in the bilayer; however, equal concentrations of these solutes do not induce equal response. Susceptibility of the modified bilayers to phospholipase A₂ depends not only upon the structure of the solute but also upon the source of the enzyme. The data show that the activity of the membrane-bound enzyme is modulated to different extents by different solutes, and the bilayer perturbing ability of these solutes may be related to the asymmetry of their cross-sectional area and to the free space introduced by the alkanols in a bilayer.     

Absence of Charge Transfer State Enables Very Low VOC Losses in SWCNT:Fullerene Solar Cells

Current state‐of‐the‐art organic solar cells (OSCs) still suffer from high losses of open‐circuit voltage (V_OC). Conventional polymer:fullerene solar cells usually exhibit bandgap to V_OC losses greater than 0.8 V. Here a detailed investigation of V_OC is presented for solution‐processed OSCs based on (6,5) single‐walled carbon nanotube (SWCNT): [6,6]‐phenyl‐C₇₁‐butyric acid methyl ester active layers. Considering the very small optical bandgap of only 1.22 eV of (6,5) SWCNTs, a high V_OC of 0.59 V leading to a low E_gap/q ? V_OC = 0.63 V loss is observed. The low voltage losses are partly due to the lack of a measurable charge transfer state and partly due to the narrow absorption edge of SWCNTs. Consequently, V_OC losses attributed to a broadening of the band edge are very small, resulting in V_OC,SQ ? V_OC,rad = 0.12 V. Interestingly, this loss is mainly caused by minor amounts of SWCNTs with smaller bandgaps as well as (6,5) SWCNT trions, all of which are experimentally well resolved employing Fourier transform photocurrent spectroscopy. In addition, the low losses due to band edge broadening, a very low voltage loss are also found due to nonradiative recombination, ΔV_OC,nonrad = 0.26 V, which is exceptional for fullerene‐based OSCs.     

Temperature response of parameters of a biochemically based model of photosynthesis. II. A review of experimental data

The temperature dependence of C₃ photosynthesis is known to vary with growth environment and with species. In an attempt to quantify this variability, a commonly used biochemically based photosynthesis model was parameterized from 19 gas exchange studies on tree and crop species. The parameter values obtained described the shape and amplitude of the temperature responses of the maximum rate of Rubisco activity (V_cmax) and the potential rate of electron transport (J_max). Original data sets were used for this review, as it is shown that derived values of V_cmax and its temperature response depend strongly on assumptions made in derivation. Values of J_max and V_cmax at 25 °C varied considerably among species but were strongly correlated, with an average J_max : V_cmax ratio of 1·67. Two species grown in cold climates, however, had lower ratios. In all studies, the J_max : V_cmax ratio declined strongly with measurement temperature. The relative temperature responses of J_max and V_cmax were relatively constant among tree species. Activation energies averaged 50 kJ mol^?1 for J_max and 65 kJ mol^?1 for V_cmax, and for most species temperature optima averaged 33 °C for J_max and 40 °C for V_cmax. However, the cold climate tree species had low temperature optima for both J_max(19 °C) and V_cmax (29 °C), suggesting acclimation of both processes to growth temperature. Crop species had somewhat different temperature responses, with higher activation energies for both J_max and V_cmax, implying narrower peaks in the temperature response for these species. The results thus suggest that both growth environment and plant type can influence the photosynthetic response to temperature. Based on these results, several suggestions are made to improve modelling of temperature responses.     

Comparison of the A–Cc curve fitting methods in determining maximum ribulose 1·5-bisphosphate carboxylase/oxygenase carboxylation rate, potential light saturated electron transport rate and leaf dark respiration

A review of the literature revealed that a variety of methods are currently used for fitting net assimilation of CO₂–chloroplastic CO₂ concentration (A–C_c) curves, resulting in considerable differences in estimating the A–C_c parameters [including maximum ribulose 1·5‐bisphosphate carboxylase/oxygenase (Rubisco) carboxylation rate (V_cmax), potential light saturated electron transport rate (J_max), leaf dark respiration in the light (R_d), mesophyll conductance (g_m) and triose‐phosphate utilization (TPU)]. In this paper, we examined the impacts of fitting methods on the estimations of V_cmax, J_max, TPU, R_d and g_m using grid search and non‐linear fitting techniques. Our results suggested that the fitting methods significantly affected the predictions of Rubisco‐limited (A_c), ribulose 1,5‐bisphosphate‐limited (A_j) and TPU‐limited (A_p) curves and leaf photosynthesis velocities because of the inconsistent estimate of V_cmax, J_max, TPU, R_d and g_m, but they barely influenced the J_max : V_cmax, V_cmax : R_d and J_max : TPU ratio. In terms of fitting accuracy, simplicity of fitting procedures and sample size requirement, we recommend to combine grid search and non‐linear techniques to directly and simultaneously fit V_cmax, J_max, TPU, R_d and g_m with the whole A–C_c curve in contrast to the conventional method, which fits V_cmax, R_d or g_m first and then solves for V_cmax, J_max and/or TPU with V_cmax, R_d and/or g_m held as constants.     

The “one‐point method” for estimating maximum carboxylation capacity of photosynthesis: A cautionary tale

The maximum carboxylation capacity of Rubisco, V_c,max, is an important photosynthetic parameter that is key to accurate estimation of carbon assimilation. The gold‐standard technique for determining V_c,max is to derive V_c,max from the initial slope of an A–C_i curve (the response of photosynthesis, A, to intercellular CO₂ concentration, C_i). Accurate estimates of V_c,max derived from an alternative and rapid “one‐point” measurement of photosynthesis could greatly accelerate data collection and model parameterization. We evaluated the practical application of the one‐point method in six species measured under standard conditions (saturating irradiance and 400 μmol CO₂ mol^?1) and under conditions that would increase the likelihood for successful estimation of V_c,max: (a) ensuring Rubisco‐limited A by measuring at 300 μmol CO₂ mol^?1 and (b) allowing time for acclimation to saturating irradiance prior to measurement. The one‐point method significantly underestimated V_c,max in four of the six species, providing estimates 21%–32% below fitted values. We identified ribulose‐1,5‐bisphosphate‐limited A, light acclimation, and the use of an assumed respiration rate as factors that limited the effective use of the one‐point method to accurately estimate V_c,max. We conclude that the one‐point method requires a species‐specific understanding of its application, is often unsuccessful, and must be used with caution.     

The Role of Exciton Ionization Processes in Bulk Heterojunction Organic Photovoltaic Cells

To realize efficient photoconversion in organic semiconductors, photogenerated excitons must be dissociated into their constituent electronic charges. In an organic photovoltaic (OPV) cell, this is most often accomplished using an electron donor–acceptor (D–A) interface. Interestingly, recent work on MoO_x/C₆₀ Schottky OPVs has demonstrated that excitons in C₆₀ may also undergo efficient bulk‐ionization and generate photocurrent as a result of the large built‐in field created by the MoO_x/C₆₀ interface. Here, it is demonstrated that bulk ionization processes also contribute to the short‐circuit current density (J_SC) and open‐circuit voltage (V_OC) in bulk heterojunction (BHJ) OPVs with fullerene‐rich compositions. Temperature‐dependent measurements of device performance are used to distinguish dissociation by bulk‐ionization from charge transfer at the D–A interface. In optimized fullerene‐rich BHJs based on the D–A pairing of boron subphthalocyanine chloride (SubPc)–C₆₀, bulk‐ionization is found to be responsible for ≈16% of the total photocurrent, and >30% of the photocurrent originating from C₆₀. The presence of bulk‐ionization in C₆₀ also impacts the temperature dependence of V_OC, with fullerene‐rich SubPc:C₆₀ BHJ OPVs showing a larger V_OC than evenly mixed BHJs. The prevalence of bulk‐ionization processes in efficient, fullerene‐rich BHJs underscores the need to include these effects when engineering device design and morphology in OPVs.     

Mathematical models for mixing in deep jet bioreactors: analysis

A mathematical model for single and multi step deep-jet bioreactors is presented. A stagewise approach based on macroscopic mechanistic model which divides the reactor into compartments with good quality of mixing and plug flow regions (macromixer), was used. For the mathematical representation of this model a system of differential equations, describing the concentration of tracer in structural elements based on mass balance, and the Runge-Kutta-Fehlberg numerical method of integration, was applied. The mixing time in a 300 dm³ tank was determined by conductivity method with NaCl as tracer.List of Symbols V _g dm³ total volume of liquid - V ₁; V ₆ dm³ volumes of ideally mixed compartments in the vessel - V ₂; V ₇ dm³ volumes of macromixer in the inner circulation flows - V ₃; V ₉ dm³ volumes of liquid phase in the pump - V ₄; V ₈ dm³ volumes of liquid phase in the pipe between the vessel and the pump - V ₅; V ₁₀ dm³ volumes of liquid phase in pipes between the pump and the air input system, including falling jet - F _E; F _E,1; F _E,2 dm³/s the inner volumetric circulation flow rates accross the macromixers - F _E,3; F _E,4 dm³/s exchanges volumetric flow rates between two ideally mixed compartments in the vessel - F _cir; F _1,cir; F _2,cir dm³/s external volumetric circulation flow rates (pumping capacity) - t _A s time interval of puls application - t _AA s time point of impuls application related to the free chosen point of simulation - t _end s end time of simulation - F _qu g²/dm⁶ sum of quadratic error - C _*,* kg/m³ concentration of the tracer in the indicated compartment - C ₀ kg/m³ concentration of the tracer before the injection - C _t kg/m³ concentration of the tracer at the indicated time - C kg/m³ theoretical concentration of full mixed tracer - i index of an arbitrary tank - C _sim kg/m³ calculated concentration of the tracer by numerical integration method     

Complexity,polymorphism, and connectivity of mouse V k gene families

To define the polymorphism and extent of the mouse immunoglobulin kappa (Igk) gene complex, we have analyzed restriction-enzyme digested genomic DNA from 33 inbred strains of mice with labeled DNA probes corresponding to 16 V _x protein groups (1 of them previously undescribed) and the J _k/C _K region (V, variable; J, joining; C, constant). These probes detected between 1 and 25 distinct restriction enzyme fragments (REF) that appeared in up to eight polymorphic patterns, thus defining eight mouse Jgk haplotypes. The investigated portion of the V _A repertoire was estimated to encompass between 60 and 120 discernable V _k gene-containing REFs. In contrast to mouse V _H gene families, several V _k gene families defined by these probes appeared to overlap. This observation has implications for V _k gene analyses by nucleic acid hybridization and raises the possibility that the V _A gene complex is a continuum of related sequences.Abbreviations used in this paper C constant - Ig immunoglobulin - J joining - REF restriction enzyme fragment - RFLP restriction fragment length polymorphism - V variable     

Genetic control of paste viscosity characteristics in indica rice (Oryza sativa L.)

 Paste viscosity parameters play an important role in estimating the eating, cooking and processing quality of rice. Four cytoplasmic male-sterile (CMS) lines and eight restorer (R) lines were employed in an incomplete diallel cross to analyze seed effects, cytoplasmic effects and maternal gene effects on the viscosity profiles of indica rice. The results indicated that the viscosity profiles of rice were controlled by the direct effects of the seed, by the cytoplasm and by maternal plant. The seed-direct effects (V _A +V _D ) accounted for over 51% of the total genetic variances (V _A +V _D +V _C +V _Am +V _Dm ) for all the traits, suggesting that seed direct effects were more important than maternal effects and cytoplasmic effects. The additive variances (V _A +V _Am ) were much larger than the dominance variances (V _D +V _Dm ), which revealed that additive genetic effects were the major contributors of genetic variation for the paste viscosity profiles, and that selection could be applied for viscosity traits in the early generations. Significant cytoplasmic variance (V _C ) was detected for hot paste viscosity (HPV), cool paste viscosity (CPV) and consistency viscosity (CSV). The cytoplasmic effects for these three traits can, therefore, not be neglected in rice breeding. It was also shown that seed heritabilities (h ² _o ) tended to be larger than maternal heritabilities (h ² _m ) and cytoplasmic heritabilities (h ² _c ). Prediction of the main genetic effects for 12 parents showed that CMS lines had highly positive effects on all the traits except for the breakdown viscosity (BDV), and that R lines had both positive and negative effects on the paste viscosity characteristics. Received: 3 August 1998 / Accepted: 28 November 1998     

Coordination of photosynthetic traits across soil and climate gradients

“Least-cost theory” posits that C₃ plants should balance rates of photosynthetic water loss and carboxylation in relation to the relative acquisition and maintenance costs of resources required for these activities. Here we investigated the dependency of photosynthetic traits on climate and soil properties using a new Australia-wide trait dataset spanning 528 species from 67 sites. We tested the hypotheses that plants on relatively cold or dry sites, or on relatively more fertile sites, would typically operate at greater CO₂ drawdown (lower ratio of leaf internal to ambient CO₂, C_i:C_a) during light-saturated photosynthesis, and at higher leaf N per area (N_area) and higher carboxylation capacity (V_{cmax 25}) for a given rate of stomatal conductance to water vapour, g_sw. These results would be indicative of plants having relatively higher water costs than nutrient costs. In general, our hypotheses were supported. Soil total phosphorus (P) concentration and (more weakly) soil pH exerted positive effects on the N_area–g_sw and V_{cmax 25}–g_sw slopes, and negative effects on C_i:C_a. The P effect strengthened when the effect of climate was removed via partial regression. We observed similar trends with increasing soil cation exchange capacity and clay content, which affect soil nutrient availability, and found that soil properties explained similar amounts of variation in the focal traits as climate did. Although climate typically explained more trait variation than soil did, together they explained up to 52% of variation in the slope relationships and soil properties explained up to 30% of the variation in individual traits. Soils influenced photosynthetic traits as well as their coordination. In particular, the influence of soil P likely reflects the Australia's geologically ancient low-relief landscapes with highly leached soils. Least-cost theory provides a valuable framework for understanding trade-offs between resource costs and use in plants, including limiting soil nutrients.