Rarity in Australian desert lizards

Most species of Australian desert lizards are uncommon. Possible causes of rarity are examined, including body size as measured by snout–vent length (SVL), fecundity, number of sites occupied, habitat niche breadth, microhabitat niche breadth, dietary niche breadth, and average total niche overlap with other species. Rare species tend to be larger with lower fecundities than abundant species and they occur at fewer sites. Many, but not all, uncommon species are specialists, either in habitat, microhabitat, or diet. The niche breadth hypothesis, which states that abundant species should be generalists whereas specialized species should be rare, is tested, but rejected as a general explanation for rarity. Some uncommon species exhibit high overlap with other species suggesting that they may experience diffuse competition. However, no single cause of rarity can be identified, but rather each species has its own idiosyncratic reasons for being uncommon. Multivariate analyses show distinct ecological differences between abundant and uncommon species.     

Rapoport's rule: an explanation or a byproduct of the latitudinal gradient in species richness?

A recent explanation of the declining species richness gradient with increasing latitude away from the tropics implicated broad scale habitat variability, an associated range expansion, and a resulting increase in niche breadth. The niche breadth in turn was thought to affect richness by competition and rescue effect. While all three factors appear to be correlated, neither the postulated nor alternative causal mechanisms have been tested. We conduct such a test using a system which has all the attributes of the large scale pattern but which, in contrast to continental scale observations, allows for estimation or control of crucial variables such as taxonomic composition, habitat heterogeneity, habitat variability, exact species distribution, and local richness. Specifically, we test the alternative that the correlation between the geographical range of species and local diversity is a function of differential species survival and link this phenomenon to habitat variability. We use 40 species of aquatic invertebrates inhabiting a landscape of 49 miniature rock pools on the coast of Jamaica. The system we examined exhibits a gradient of increasing richness with decreasing habitat variability, analogous to the broad scale latitudinal pattern. Furthermore, species with broader ecological ranges are also broadly distributed. Superficially, this appears to be in agreement with the older explanations but two facts suggest different causes. First, there is no evidence of a rescue effect maintaining high richness in many habitats despite their proximity to species sources. Second, ecologically broad species coexist with habitat specialists without reducing richness in jointly occupied habitats.     

Variation in niche parameters along the diversity gradient of unicellular eukaryote assemblages

We examined the relationship between average niche parameters and species richness of benthic diatom assemblages of boreal streams. We hypothesized that diverse assemblages should be typified by small average niche breadth of species, whereas low-diversity assemblages should be typified by broad average niche breadth. We also hypothesized that low-diversity sites should be dominated by either non-marginal species only or marginal species only, depending on the degree to which these sites could be categorized to range from environmentally typical sites to atypical sites. Niche breadth and niche position for each species were determined via Outlying Mean Index analysis. As hypothesized, we found that median niche parameters were significantly related to species richness. Median niche breadth showed both significant linear (R(2)=0.328, p<0.001) and unimodal (R(2)=0.354, p<0.001) relationship to species richness. The relationship between median niche position and species richness was best approximated by a unimodal model (R(2)=0.214, p=0.005). The underlying gradient in species richness was best accounted for by a regression model including moss cover, iron, and nitrogen, and explained 32% of variability in species richness. Our results showed that sites with high-diversity assemblages are likely to be occupied by specialists with a narrow niche breadth, whereas low diversity assemblages are dominated by generalists. Furthermore, the unimodal relationship between niche position and species richness suggested that species-poor sites may be typified by either non-marginal or marginal species.     

Functional traits reveal the expansion and packing of ecological niche space underlying an elevational diversity gradient in passerine birds

Variation in species richness across environmental gradients may be associated with an expanded volume or increased packing of ecological niche space. However, the relative importance of these alternative scenarios remains unknown, largely because standardized information on functional traits and their ecological relevance is lacking for major diversity gradients. Here, we combine data on morphological and ecological traits for 523 species of passerine birds distributed across an Andes-to-Amazon elevation gradient. We show that morphological traits capture substantial variation in species dietary (75%) and foraging niches (60%) when multiple independent trait dimensions are considered. Having established these relationships, we show that the 14-fold increase in species richness towards the lowlands is associated with both an increased volume and density of functional trait space. However, we find that increases in volume contribute little to changes in richness, with most (78%) lowland species occurring within the range of trait space occupied at high elevations. Taken together, our results suggest that high species richness is mainly associated with a denser occupation of functional trait space, implying an increased specialization or overlap of ecological niches, and supporting the view that niche packing is the dominant trend underlying gradients of increasing biodiversity towards the lowland tropics.     

Accounting for regional niche variation in habitat suitability models

Ecological niche modeling has become an increasingly important tool to address issues in many fields of basic and applied ecology. The ecological niche space occupied across the geographic range, particularly for wide-ranging species, may vary for a variety of evolutionary and non-evolutionary reasons. However, ecological niche models are often applied over large geographic areas without regard for the potential effects of regional variation in adaptation, environmental conditions and their interactions, and species responses, thus significantly reducing their accuracy and utility. We develop regionally partitioned ecological niche models, using GARP, for the wide-ranging North American tree Gleditsia triacanthos (Fabaceae) . Models were constructed based on known tree occurrences at peripheral and range-centre locations, as well as across the geographic range as a whole.
Our results suggest that the niche space occupied by G. triacanthos varies regionally and that between some regions in particular there may be a complete absence of niche overlap. In particular, while there is some overlap between the niche space occupied by trees in the western and central regions of the range, there appears to be virtually no overlap in the niche space occupied by trees in the south of the range and that occupied by western and central trees. This lack of overlap appears to be driven primarily by regional differences in abiotic conditions, rather than regional adaptation per se. The results of our study have several important implications for the future development of habitat suitability models over large geographic areas. Spatial partitioning of data is clearly necessary to improve predictions of models where regional niche variation occurs. For wide-ranging species in particular, regional differences in ecological characteristics may cause apparent niche variation.     

Biogeography of the Primates of Guyana: Effects of Habitat Use and Diet on Geographic Distribution

Species that exploit a wide range of resources or habitats (generalists) tend to be widely distributed, whereas species that exploit a narrow range of resources or habitats (specialists) often have a limited distribution. The distribution patterns are thought to result from specialists using relatively smaller habitats than those exploited by generalists. I used data from 1,725 km of primate surveys that I conducted in Guyana to test these hypotheses. Habitat breadth is the total number of different habitat types occupied by each species. I used the total number of different food categories exploited by each species to measure dietary breadth. Geographic range size is correlated with habitat breadth but not with dietary breadth or body size for the 8 primate species in Guyana. Habitat generalists—red howlers and wedge-capped capuchins—range into all habitats. Habitat specialists—spider monkeys, brown bearded sakis, and golden-handed tamarins—range only into large habitats. Habitat generalists tend to be dietary type specialists in Guyana. I suggest that only habitat generalists can subsist on the low-quality foods in small habitats in Guyana. Conversely, habitat specialists tend to be dietary type generalists in Guyana. They must feed on a variety of food types in large habitats. However, using the number of food categories exploited as a measure of dietary breadth may be only a weak aspect of multidimensional niche. Researchers testing biogeographic hypotheses associated with dietary breadth should consider including multivariate indicators of both the types of food categories eaten and the number of plant species exploited.     

Evidence that niche specialization explains species-energy relationships in lake fish communities

1. Interspecific niche differences have long been identified as a major explanation for the occurrence of species-rich communities. However, much fieldwork studying variation in local species richness has focused upon physical habitat attributes or regional factors, such as the size of the regional species pool. 2. We applied indices of functional diversity and niche overlap to data on the species niche to examine the importance of interspecific niche differentiation for species richness in French lake fish communities. We combined this information with environmental data to test generalizations of the physiological tolerance and niche specialization hypotheses for species-energy relationships. 3. We found evidence for a largely non-saturating relationship (relative to random expectation) between species richness and functional evenness (evenness of spacing between species in niche space), while functional richness (volume of niche space occupied) peaked at moderate levels of species richness and niche overlap showed an initial decrease followed by saturation. This suggests that increased niche specialization may have allowed species to coexist in the most species-rich communities. 4. We tested for evidence that increased temperature, local habitat area, local habitat diversity and immigration affected species richness via increased niche specialization. Temperature explained by far the largest amount of variation in species richness, functional diversity and niche overlap. These results, combined with the largely non-saturating species richness-functional evenness relationship, suggest that increased temperature may have permitted increased species richness by allowing increased niche specialization. 5. These results emphasize the importance of niche differences for species coexistence in species-rich communities, and indicate that the conservation of functional diversity may be vital for the maintenance of species diversity in biological communities. Our approach may be applied readily to many types of community, and at any scale, thus providing a flexible means of testing niche-based hypotheses for species richness gradients.     

Regional occupancy in unicellular eukaryotes: a reflection of niche breadth,habitat availability or size‐related dispersal capacity?

1. The distribution patterns of unicellular and multicellular organisms have recently been shown to differ profoundly, with the former probably being mostly cosmopolitan, whereas the latter are mostly restricted to certain regions. However, the within‐region distribution patterns of these two organism groups may be rather similar. 2. We predicted that the degree of regional occupancy in unicellular eukaryotes would be related to niche characteristics, dispersal ability and size, as has been found previously for multicellular organisms. The niche characteristics we considered were niche position, that measures marginality in species habitat distribution, and niche breadth, that measures amplitude in species habitat distribution. Niche characteristics were determined using Outlying Mean Index (OMI) analysis. 3. We found that the regional occupancy in our model group of unicellular eukaryotes, stream diatoms, was primarily a reflection of the niche position of a species or, more generally, habitat availability. Thus, non‐marginal species (i.e. species that occupied common habitat conditions across the region) tended to be more widely distributed than marginal species (i.e. species that were restricted to a limited range of rare habitat conditions). This finding was further supported by the general linear model, with niche position, niche breadth, maximum size and attachment mode as explanatory variables: niche position was by far the most important variable accounting for variability in regional occupancy, with significant amounts of additional variation related to niche breadth and maximum size of diatoms. 4. Thus, the degree of regional occupancy among unicellular eukaryotes may be primarily governed by habitat availability, supporting former findings for multicellular organisms.     

The role of niche breadth, resource availability and range position on the life history of butterflies

We analysed the relationship between three life history characteristics (mobility, length of flight period and body size) and niche breadth (larval host plant specificity and adult habitat breadth), resource availability (distribution and abundance of host plants) and range position (distance between the northernmost distribution record and southernmost point of Finland) of the butterfly fauna of Finland. The data is based on literature and questionnaires. Often in across species studies phylogeny may create spurious relationships between life-history and ecological variables. We took the phylogenetic relatedness of butterfly species into account by analysing the data with phylogenetically independent contrasts (CAIC method). Butterfly mobility was positively related to the niche breadth, resource availability and range position. The length of the flight period was negatively related to the range position, indicating that the species at the northern edge of their distribution range have shorter flight period than species which are further way from the range edge. After controlling for the phylogenetic relatedness we found no significant correlations between body size and niche breadth, resource availability or range position. We suggest that the relationship between the length of the flight period and range position may arise as a consequence of lower hatching asynchrony in edge species as a result of lower environmental variance in larval growth conditions. Our results on the mobility suggest that there is selection pressure towards lower migration rate in species that have restricted niche breadth, low resource availability and in species that are on the northern edge of their geographical distribution range. In such species, selection against mobile individuals is likely to result from the decreased probability of finding another habitat patch suitable for egg laying.     

Only the largest terrestrial carnivores increase their dietary breadth with increasing prey richness

1. Animals should adapt their foraging habits, changing their dietary breadth in response to variation in the richness and availability of food resources. Understanding how species modify their dietary breadth according to variation in resource richness would support predictions of their responses to environmental changes that alter prey communities.
2. We evaluated relationships between the dietary breadth of large terrestrial carnivores and the local richness of large prey (defined as the number of species). We tested alternative predictions suggested by ecological and evolutionary theories: with increasing prey richness, species would (1) show a more diverse diet, thus broadening their dietary breadth, or (2) narrow their dietary breadth, indicating specialisation on a smaller number of prey.
3. We collated data from 505 studies of the diets of 12 species of large terrestrial mammalian carnivores to model relationships between two indices of dietary breadth and local prey richness.
4. For the majority of species, we found no evidence for narrowing dietary breadth (i.e. increased specialisation) with increasing prey richness. Although the snow leopard and the dhole appeared to use a lower number of large prey species with increasing prey richness, larger sample sizes are needed to support this result.
5. With increasing prey richness, the five largest carnivores (puma Puma concolor, spotted hyaena Crocuta crocuta, jaguar Panthera onca, lion Panthera leo, and tiger Panthera tigris), plus the Eurasian lynx Lynx lynx and the grey wolf Canis lupus (which are usually top predators in the areas from which data were obtained), showed greater dietary breadth and/or used a greater number of large prey species (i.e. increased generalism).
6. We suggest that dominant large carnivores encounter little competition in expanding their dietary breadth with increasing prey richness; conversely, the dietary niche of subordinate large carnivores is limited by competition with larger, dominant predators. We suggest that, over evolutionary time, resource partitioning is more important in shaping the dietary niche of smaller, inferior competitors than the niche of dominant ones.

     

Niche breadth explains the range size of European-centred butterflies,but dispersal ability does not

Aim

The breadth of ecological niches and dispersal abilities have long been discussed as important determinants of species' range sizes. However, studies directly comparing the relative effects of both factors are rare, taxonomically biased and revealed inconsistent results.

Location

Europe.

Time Period

Cenozoic.

Major Taxa

Butterflies, Lepidoptera.

Methods

We relate climate, diet and habitat niche breadth and two indicators of dispersal ability, wingspan and a dispersal tendency index, to the global range size of 369 European-centred butterfly species. The relative effects of these five predictors and their variation across the butterfly phylogeny were assessed by means of phylogenetic generalized least squares models and phylogenetically weighted regressions respectively.

Results

Climate niche breadth was the most important single predictor, followed by habitat and diet niche breadth, while dispersal tendency and wingspan showed no relation to species' range size. All predictors together explained 59% of the variation in butterfly range size. However, the effects of each predictor varied considerably across families and genera.

Main Conclusions

Range sizes of European-centred butterflies are strongly correlated with ecological niche breadth but apparently independent of dispersal ability. The magnitude of range size–niche breadth relationships is not stationary across the phylogeny and is often negatively correlated across the different dimensions of the ecological niche. This variation limits the generalizability of range size–trait relationships across broad taxonomic groups.     

Behavioural and genetic interactions between an endangered and a recently-arrived hummingbird

The invasion or expansion of non-native species into new geographic areas can pose a major threat to the conservation of biodiversity. These threats are augmented when the newly-arrived species interacts with native species that are already threatened by other ecological or anthropogenic processes. Potential interactions can include both competition for scarce resources and reproductive interference, including hybridisation. Understanding the dynamics of these interactions forms a crucial component of conservation management strategies. A recent contact zone occurs in the north of Chile between the endangered Chilean woodstar (Eulidia yarrellii) and the closely-related and recently-arrived Peruvian sheartail (Thaumastura cora), which expanded its range from Peru into Chile during the 1970s. We characterised the interactions between the species by combining population size estimates with molecular, morphological and behavioural data. We show that a low degree of hybridisation, but not introgression, is occurring between the two species. Despite interspecific morphological similarities, behavioural observations indicate that food niche overlap between the species is relatively low, and that the dietary breadth of sheartails is larger, which may have aided the species’ range expansion. Finally, woodstars dominate the sheartails in male–male territorial interactions. However, potentially increased energetic costs for woodstars associated with frequent territorial chases and courtship displaying with sheartails may exacerbate the effects of other threats on woodstar viability, such as human-induced habitat modification. This study highlights the value of implementing multidisciplinary approaches in conservation biology to gain a more complete understanding of interactions between recently-arrived and endangered species.     

Human activity reduces niche partitioning among three widespread mesocarnivores

Anthropogenic disturbances can constrain the realized niche space of wildlife by inducing avoidance behaviors and altering community dynamics. Human activity might contribute to reduced partitioning of niche space by carnivores that consume similar resources, both by promoting tolerant species while also altering behavior of species (e.g. activity patterns). We investigated the influence of anthropogenic disturbance on habitat and dietary niche breadth and overlap among competing carnivores, and explored if altered resource partitioning could be explained by human‐induced activity shifts. To describe the diets of coyotes, bobcat, and gray foxes, we designed a citizen science program to collect carnivore scat samples in low‐ (‘wildland’) and high‐ (‘interface’) human‐use open space preserves, and obtained diet estimates using a DNA metabarcoding approach. Habitat use was determined at scat locations. We found that coyotes expanded habitat and dietary niche breadth in interface preserves, whereas bobcats and foxes narrowed both niche breadth measures. High human use was related to increased dietary niche overlap among all mesocarnivore pairs, increased coyote habitat overlap with bobcats and foxes, and a small reduction in habitat overlap between bobcats and foxes. The strongest increase in diet overlap was among coyotes and foxes, which was smaller in magnitude than their habitat overlap increase. Finally, coyote scats were more likely to contain nocturnal prey in interface preserves, whereas foxes appeared to reduce consumption of nocturnal prey. Our results suggest that dominant and generalist mesocarnivores may encroach on the niche space of subordinate mesocarnivores in areas with high human activity, and that patterns in resource use may be related to human‐induced activity shifts.     

Distribution Patterns and Conservation Perspectives of the Endemic Flora of Peloponnese (Greece)

An inventory of the endemic vascular plants of the Peloponnese (395 species and subspecies) has been created based on literature, herbarium and field data. Endemics?? distribution patterns, altitudinal distribution and habitat specificity were investigated. A rarity score for each endemic has been calculated based on its population size, geographic range and habitat specificity. The main mountainous areas of the Peloponnese are largely congruent to the hotspots of endemism. Altitudinal range and niche breadth of the endemics were positively correlated to their range size. The elevational gradient of the endemic species richness showed a hump-shaped pattern, in contrast to the monotonically decreasing pattern of total species richness. Endemic species were found to support boundary theory, while total species richness distribution followed the Rapoport??s elevational rule. The elevational distribution of the average rarity score and the average weighted threat of the endemics resulted in low values for mid-elevation intervals and increased values for low and high altitude areas, indicating that conservation efforts should focus on the two extremes of the elevational gradient. Area prioritization methods were applied using a rarity/complementarity based algorithm with two species weighting schemes. Their results were largely congruent confirming the significance of the main mountainous areas for the conservation of the endemics. Spatial overlap among selected grid cells using the rarity/complementarity analysis and Natura 2000 network was found to be low. Our results revealed the conservation importance of at least one new area located on Kythera Island.     

The coexistence of fish species in streams: relationships between assemblage attributes and trophic and environmental variables

Diet overlap and niche breadth are well-known species traits from trophic ecology that can assist in explaining how species interact and coexist as well as the ecological mechanisms that influence biodiversity. In the present study, we analyzed the relationships between these trophic variables and indicators of resource availability with some attributes of fish assemblages (species richness, Shannon diversity index, evenness, density and individual body size). The physical and chemical characteristics of the biotopes (topography, water quality and conservation of slopes) were examined to identify possible patterns. Monthly sampling using electrofishing was conducted in 2003 along five streams located in the Cuiabá River watershed. The relationships between environmental variables and attributes of fish assemblages were evaluated using Spearman correlation. Species richness and abundance varied among streams, with higher values (54 and 82 species) found in low-gradient streams that drained small swampy areas discharging in Cuiabá River. Diet overlap showed significant and negative correlations with species richness, the diversity index, abundance, variation in body size and food availability and positive correlations with evenness and niche breadth. Environments that had greater food availability had a reduced variety of food items (smaller amplitude) and distinct values in terms of dietary overlap. Nevertheless, to explain resource partitioning in a fish assemblage (overlap), it is necessary to consider food availability and niche breadth (degree of trophic specialization) beyond the interaction of these variables with species richness and density. In conclusion, high diversity and abundance values were strongly associated with a high degree of trophic specialization (low amplitude of trophic niche) and a small degree of overlap in the diet.     

Mammals of the northern Philippines: tolerance for habitat disturbance and resistance to invasive species in an endemic insular fauna

Aim Island faunas, particularly those with high levels of endemism, usually are considered especially susceptible to disruption from habitat disturbance and invasive alien species. We tested this general hypothesis by examining the distribution of small mammals along gradients of anthropogenic habitat disturbance in northern Luzon Island, an area with a very high level of mammalian endemism. Location Central Cordillera, northern Luzon Island, Philippines. Methods  Using standard trapping techniques, we documented the occurrence and abundance of 16 endemic and two non‐native species along four disturbance gradients where habitat ranged from mature forest to deforested cropland. Using regression analysis and AIC_c for model selection, we assessed the influence of four predictor variables (geographic range, elevational range, body size and diet breadth) on the disturbance tolerance of species. Results Non‐native species dominated areas with the most severe disturbance and were rare or absent in mature forest. Native species richness declined with increasing disturbance level, but responses of individual species varied. Elevational range (a measure of habitat breadth) was the best predictor of response of native species to habitat disturbance. Geographic range, body size and diet breadth were weakly correlated. Main conclusions The endemic small mammal fauna of northern Luzon includes species adapted to varying levels of natural disturbance and appears to be resistant to disruption by resident alien species. In these respects, it resembles a diverse continental fauna rather than a depauperate insular fauna. We conclude that the long and complex history of Luzon as an ancient member of the Philippine island arc system has involved highly dynamic ecological conditions resulting in a biota adapted to changing conditions. We predict that similar responses will be seen in other taxonomic groups and in other ancient island arc systems.     

Host specificity and geographic range in haematophagous ectoparasites

A negative interspecific correlation between the degree of habitat specialization and the size of a species' geographic range has been documented for several free living groups of organisms, providing support for the niche breadth hypothesis. In contrast, practically nothing is known about the geographic range sizes of parasitic organisms and their determinants. In the context of the niche breadth hypothesis, parasites represent ideal study systems, because of the well documented variation in host specificity among parasite species. Here, we investigated the relationship between host specificity (a measure of niche breadth) and geographic range size among flea species parasitic on small mammals, using data from seven distinct geographical regions. Two measures of host specificity were used: the number of host species used by a flea species, and a measure of the average taxonomic distance between the host species used by a flea; the latter index provides an evolutionary perspective on host specificity. After correcting for phylogenetic influences, and using either of our two measures of host specificity, the degree of host specificity of fleas was negatively correlated with the size of their geographic range in all seven regions studied here, with only one minor exception. Overall, these results provide strong support for the niche breadth hypothesis, although other explanations cannot be ruled out.     

Optimal foraging constrains macroecological patterns: body size and dietary niche breadth in lizards

Aim  To explore and identify probable mechanisms contributing to the relationships among body size, dietary niche breadth and mean, minimum, maximum and range of prey size in predaceous lizards.
Location  Our data set includes species from tropical rainforests, semi-arid regions of Brazil, and from deserts of the south-western United States, Australia and the Kalahari of Africa.
Methods  We calculated phylogenetic and non-phylogenetic regressions among predator body size, dietary breath and various prey size measures.
Results  We found a negative association between body size and dietary niche breadth in 159 lizard species sampled across most evolutionary lineages of squamate reptiles and across major continents and habitats. We also show that mean, minimum, maximum and range of prey size were positively associated with body size.
Main conclusions  Our results suggest not only that larger lizards tend to eat larger prey, but in doing so offset their use of smaller prey. Reduction of dietary niche breadth with increased body size in these lizards suggests that large predators target large and more profitable prey. Consequently, the negative association between body size and niche breadth in predators most likely results from optimal foraging. Though this result may appear paradoxical and runs counter to previous studies, resources for predators may be predictably more limited than resources for herbivores, thus driving selection for more profitable prey.     

Ecomorphological analysis of fish taxocenes in rainforest streams of northern Borneo

Average species richness for fish taxocenes in the Nida River (Poland), Grand River (Ontario) and Baram River (Sarawak, Malaysia) was 7, 16 and 24 species respectively. Discriminant analysis of 15 morphological attributes indicated Baram fishes partitioned the habitat vertically into mainly surface, pelagic, benthic and substratum niche types. Attribute comparisons among the river systems revealed a progression towards more sedentary benthic morphologies with increasing average species richness. Similarly, niche compression as a consequence of increasing average species richness was indicated by a reduction in length of life and average size, and was associated with development of complex life-history and reproductive styles. Total niche space occupied by the fish taxocenes was comparable in the three river systems despite differences in species richness. The amount of species packing and niche space occupied by Baram fish taxocenes were also not related to the numbers of species present. Fish community structure was apparently determined by the range of available resources and the associated specializations of the coexisting species.