Making choices between rules or between actions

A new study by Klaes et al. in this issue of Neuron shows that the brain can simultaneously apply two rules to the same sensory information in order to specify two parallel potential action goals, which then compete for execution in the sensorimotor system.     

Competition between phenotypes

Summary We present two models for phenotypic-dependent interspecific competition. In both cases the survivorship of individuals of one population depends on the entire phenotypic distribution of the other species. The first model considers a continuously varying metric trait, with assortative or random mating; the second model examines a character controlled by two alleles at a single locus. Pursuing the notion that each population maximizes its mean fitness we define a vector-optimum strategy using the concepts of cooperative and competitive optima. It is found that the dynamical constraints placed on the equations of motion by Mendelian genetics often prevent a population from evolving to a strategic optimum. However, for the single locus case with complete dominance, the competitive optimum always coincides with some dynamical equilibrium on the Hardy-Weinberg manifold.     

Games between relatives

The idea of an evolutionarily stable strategy, or ESS, is extended to games between related individuals. There are two possible approaches. The “personal fitness” approach, proposed by Grafen (1979), modifies the fitness of an individual by allowing for the fact that an individual is more likely than other members of the population to meet an opponent adopting the same strategy as himself. The “inclusive fitness” approach adds to the payoff of an individual r times the payoff to his opponent, where r is the coefficient of relationship between them. We regard the former method as correct, but show that if a strategy p meets the inclusive fitness criterion this is necessary but not sufficient to ensure that it meets the personal fitness criterion. If the vector p gives the probability distribution of policies in a mixed ESS, and $\text{p}{}^1$ the frequency distribution of pure strategists in a stable population playing the same game, p and $\text{p}{}^1$ are in general not the same if opponents are related, as they usually are if opponents are unrelated. ESS's are given for the Hawk-Dove game and the War of Attrition, which illustrate these points.     

基因间的同源关系

同源是指从共同祖先的特性遗传下来的通常带有分歧的两个特征之间的关系。同源概念组成了进化基因组学的基础并对功能基因组学有巨大作用,但基于对同源概念的不准确理解,当前对其有诸多模糊表述,因此了解其确切含义具有重要意义。本文就同源、直系同源和旁系同源的概念和性质进行综述。     

基因间的同源关系

同源是指从共同祖先的特性遗传下来的通常带有分歧的两个特征之间的关系。同源概念组成了进化基因组学的基础并对功能基因组学有巨大作用,但基于对同源概念的不准确理解,当前对其有诸多模糊表述,因此了解其确切含义具有重要意义。本文就同源、直系同源和旁系同源的概念和性质进行综述。     

Competition between kingdoms

Although studies of interspecific competition have traditionally been concerned with interactions between closely related species, ecological systems teem with examples of competition between representatives not only from different phyla, but even from different kingdoms. Indeed, inter-kingdom competition may be one of the commonest forms of interaction in nature; particularly prevalent are competitive interactions for shared hosts between insect parasitoids and pathogens from four other kingdoms. Ecologists have barely started to explore the ecological and evolutionary implications of interkingdom competition.     

Correlations between measures of thermal stress resistance within and between species

Resistance to an environmental stress such as elevated temperature can almost always be measured in several different ways. A number of recent studies in Drosophila show that lethal and non-lethal measures of resistance to heat stress are genetically independent. In contrast, data reported here suggest that there are interspecific correlations between measures of thermal stress resistance. Together, these results show that studies of intraspecific variation in stress resistance must demonstrate the ecological relevance of the measures of stress resistance chosen for study. In contrast, interspecific comparisons could be based on any of several measures of resistance. It would be interesting to determine if this pattern holds for resistance to other major environmental stresses.     

Correspondences between classifications and between classes of entities in molecular genetics

Certain correspondences appear between the classifications and between the classes of various entities at molecular genetic level: types of fundamental correspondences between classifications and between classes of normal entities, on the one hand, and of mutant entities on the other hand; ranks of correspondences between classifications and between classes of entities. The concept of universality of the genetic code was reformulated on the basis of the above correspondences.     

Cross-reactivity between storage and dust mites and between mites and shrimp

Many patients have sensitivities to multiple species of storage and house dust mites. It is not clear if this is because patients have multiple sensitivities to species-specific mite allergens or if these mites share many cross-reacting allergens. Our objective was to further define the cross-allergenicity between several species of storage and house dust mites using crossed-immunoelectrophoresis (CIE), crossed-radioimmunoelectrophoresis (CRIE), immunoblotting, and ELISA. CIE and CRIE reactions revealed that storage mites shared two cross-antigenic molecules and one of these bound IgE in a serum pool from mite allergic patients. Antibody in anti-sera built to each species of mite recognized many SDS–PAGE resolved proteins of other mite species and this suggested the potential for other cross-reactive allergens. Among patient sera, IgE bound to many different proteins but few had IgE that bound to a protein with common molecular weights across the mite species and this suggested mostly species-specific allergens. Antiserum built to each mite species precipitated one protein in shrimp extracts that bound anti-Der p 10 (tropomyosin) and IgE in the serum pool. Anti-Der p 10 showed strong binding to shrimp tropomyosin but very little to any of the mite proteins. ELISA showed the mite extracts contained very little tropomyosin. The storage and dust mites investigated contain mostly species-specific allergens and very small amounts of the pan-allergen tropomyosin compared to shrimp and snail.     

Interaction between positional but not between non-positional cues in human predictive learning

Four experiments with human subjects examined the cue-interaction effects using a computer-controlled predictive learning task. In Phase 1, subjects learned that cue P was consistently associated with the occurrence of an outcome (P+), whereas cue N was never followed by the outcome (N−). In Phase 2, two neutral cues, R and I, were compounded with P and N, respectively. Each compound was followed by the outcome (PR+ and NI+). Thus, cue R was compounded with the already predictive cue P, whereas cue I was compounded with the non-predictive cue N. In each phase, subjects rated the contingency between the different cues and the outcome. In experiments 1 and 2, the spatial position of the cues was fixed, whereas it was variable in experiments 3, 4a and 4b. Verbal cues were used in experiments 1–3, whereas the cues consisted of geometrical figures in experiments 4a and 4b. Evidence for cue interaction, as indicated by giving cue I a higher contingency rating than cue R after or during Phase 2, was only found under the conditions of experiments 1 and 2. The results indicate that the use of positional cues facilitates the occurrence of cue-interaction effects. Possible reasons for this finding are discussed.     

Electrostatic recognition between enzyme and inhibitor: interaction between papain and leupeptin

Electrostatic forces are involved in a wide variety of molecular interactions that are of biological interest, including, among others, DNA-Protein interactions, protein folding, and the interactions between enzymes and their substrates and inhibitors. In this work, the interaction between papain and an inhibitor, leupeptin, is analyzed from the point of view of their electrostatic interaction. The computations enable one to suggest that negatively charged amino acids located in the region of the active site are responsible for creating an environment that enables efficient binding of the inhibitor. This binding occurs despite the fact that the net global charge of both molecules is positive; an explanation for this apparent contradiction is proposed.     

Caught between two Allee effects: Trade-off between reproduction and predation risk

Reproductive activities are often associated with conspicuous morphology or behaviour that could be exploited by predators. Individuals can therefore face a trade-off between reproduction and predation risk. Here we use simple models to explore population-dynamical consequences of such a trade-off for populations subject to a mate-finding Allee effect and an Allee effect due to predation. We present our results in the light of populations that belong to endangered species or pests and study their viability and resilience. We distinguish several qualitative scenarios characterized by the shape and strength of the trade-off and, in particular, identify conditions for which the populations survive or go extinct. Reproduction can be so costly that the population always goes extinct. In other cases, the population goes extinct only over a certain range of low, intermediate or high levels of reproductive activities. Moreover, we show that predator removal (e.g. in an attempt to save an endangered prey species) has the least effect on populations with low cost of reproduction in terms of predation and, conversely, predator addition (e.g. to eradicate a pest) is most effective for populations with high predation cost of reproduction. Our results indicate that a detailed knowledge of the trade-off can be crucial in applications: for some trade-off shapes, only intermediate levels of reproductive activities might guarantee population survival, while they can lead to extinction for others. We therefore suggest that the fate of populations subject to the two antagonistic Allee effects should be evaluated on a case-by-case basis. Although the literature offers no quantitative data on possible trade-off shapes in any taxa, indirect evidence suggests that the trade-off and both Allee effects can occur simultaneously, e.g. in the golden egg bug Phyllomorpha laciniata.     

Mechanical Coupling between Myosin Molecules Causes Differences between Ensemble and Single-Molecule Measurements

In contracting muscle, individual myosin molecules function as part of a large ensemble, hydrolyzing ATP to power the relative sliding of actin filaments. The technological advances that have enabled direct observation and manipulation of single molecules, including recent experiments that have explored myosin's force-dependent properties, provide detailed insight into the kinetics of myosin's mechanochemical interaction with actin. However, it has been difficult to reconcile these single-molecule observations with the behavior of myosin in an ensemble. Here, using a combination of simulations and theory, we show that the kinetic mechanism derived from single-molecule experiments describes ensemble behavior; but the connection between single molecule and ensemble is complex. In particular, even in the absence of external force, internal forces generated between myosin molecules in a large ensemble accelerate ADP release and increase how far actin moves during a single myosin attachment. These myosin-induced changes in strong binding lifetime and attachment distance cause measurable properties, such as actin speed in the motility assay, to vary depending on the number of myosin molecules interacting with an actin filament. This ensemble-size effect challenges the simple detachment limited model of motility, because even when motility speed is limited by ADP release, increasing attachment rate can increase motility speed.