Multi-gene phylogenetic analyses reveals <Emphasis Type="Italic">Neohelicosporium</Emphasis> gen. nov. and five new species of helicosporous hyphomycetes from aquatic habitats

Helicosporous hyphomycetes are a morphologically allied group of Tubeufiales. We introduce a new helicosporous genus, Neohelicosporium, with five new species, Neohelicosporium aquaticum, N. guangxiense, N. hyalosporum, N. parvisporum, and N. thailandicum, based on morphological and phylogenetic evidence. The RPB2 protein gene data are provided to analyze their phylogeny in Tubeufiales. Phylogenetic analyses of combined ITS, LSU, RPB2, and TEF1α sequence data from 13 new isolates of Neohelicosporium provided evidence to support the establishment of the new taxa. The morphological characters of Neohelicosporium that differentiate it from other helicosporous species are compared and discussed.     

<Emphasis Type="Italic">Cortinarius</Emphasis> sect. <Emphasis Type="Italic">Riederi</Emphasis>: taxonomy and phylogeny of the new section with European and North American distribution

Cortinarius is one of the most species-rich genera of mushroom-forming fungi. Based on phylogenetic and morphological evidence, Cortinarius, sect. Riederi, is introduced at sectional level (= subsect. Riederi sensu Brandrud & Melot). The taxonomy, phylogeny, ecology and distribution of not only mainly European but also including some North American taxa of this section are treated, which includes nine species and two varieties. Of these, three taxa are described as new (C. burlinghamiae, C. pallidoriederi and C. argenteolilacinus var. dovrensis). The sect. Riederi species possess morphological features similar to Phlegmacium group(s) and forms a phylogenetically isolated lineage, with no supported affinity to other phlegmacioid groups. Three taxa are known from both Europe and North America, two species are known only from North America and five only from Europe. Altogether, eight of the ten taxa are associated with conifers or northern (boreal-subalpine) deciduous trees (Betula spp.). Only two species occur in more temperate forests (Fagus forests), and no species have so far been found in thermophilous Quercus forests     

Phylogenetic relationships in Iranian <Emphasis Type="Italic">Scutellaria</Emphasis> (Lamiaceae) based on nuclear ribosomal ITS and chloroplast <Emphasis Type="Italic">trn</Emphasis>L-F DNA data

The genus Scutellaria (Lamiaceae, Scutellarioidae) includes taxa with a wide range of pharmacological traits, which make this genus economically important. Previous taxonomical studies on Scutellaria were mainly based on morphological and chromosomal characters. The infrageneric classification of the genus has been the subject of a long controversy among authors, and delimitation of taxa remains problematic. In this study, the phylogeny of the genus was evaluated using nrDNA ITS and trnL-F sequences, with a focus on the 42 Iranian taxa belonging to subgenera Apeltanthus and Scutellaria. In both ITS and trnL-F trees, there were two main clades within the genus corresponding to the two subgenera Scutellaria and Apeltanthus. In the subg. Scutellaria, the sect. Anaspis was monophyletic, but the monophyly of sect. Scutellaria was not supported. In this subgenus, S. galericulata was located away from other species in both trees, supported the isolation of this species from the sect. Scutellaria and inclusion in the sect. Galericularia as was previously considered by some authors. In subg. Apeltanthus, sect. Apeltanthus and sect. Lupulinaria were not monophyletic; furthermore, the monophyly of subsect. Lupulinaria was not supported. Based on the results of this study, it can be suggested that the sectional classification of both subgenera Apeltanthus and Scutellaria should be revised.     

Taxonomic re-evaluation of the genus <Emphasis Type="Italic">Lambertella</Emphasis> (Rutstroemiaceae,Helotiales) and allied stroma-forming fungi

The genus Lambertella is currently considered to be one of the largest genera in the family Rutstroemiaceae, and its major distinguishing character is the pigmentation of ascospores, besides a substratal stroma. Although Lambertella appears to be well-defined by morphological characters, its phylogenetic heterogeneity has been suggested in earlier studies. To circumscribe the genus more precisely, morphological examination and phylogenetic analysis was conducted on some Lambertella species and some allied stroma-forming fungi. In total, 58 taxa were included in the study, including 16 species with both a substratal stroma and pigmented ascospores. The polyphyly of Lambertella sensu lato was confirmed based on the phylogenetic analysis of ITS, LSU, and RPB2 regions. A highly supported clade is composed of five Lambertella species, including the type L. corni-maris. Morphologically, all species here included in Lambertella s. s. have brown ascospores prior to being discharged from asci, whereas in other species currently placed in Lambertella, but now excluded from the genus, they turn brown only after discharge. This clade was defined as Lambertella sensu stricto. Pigmentation of the ascospores was also recognized in Lanzia and Poculum, and even in the helotiaceous genus Hymenoscyphus, but always only after discharge. The convergent evolution of a dark substratal stroma in Rutstroemiaceae and Helotiaceae was also indicated.     

<Emphasis Type="Italic">Pseudopestalotiopsis ignota</Emphasis> and <Emphasis Type="Italic">Ps. camelliae</Emphasis> spp. nov. associated with grey blight disease of tea in China

We combined morphological and combined ITS, TUB and TEF sequence data to infer the phylogeny of the recently introduced genus Pseudopestalotiopsis. Two new species from China, Ps. camelliae from blighted leaves of Camellia sinensis and Ps. ignota from an undetermined host in China, are introduced with illustrated accounts and compared with similar taxa. Grey blight disease of tea appears to be caused by a group of fungi that constitutes a species complex. A new combination is proposed to emend the monophyly of Pseudopestalotiopsis and a species comparison is provided for taxa in the genus.     

<Emphasis Type="Italic">Leifiporia rhizomorpha</Emphasis> gen. et sp. nov. and <Emphasis Type="Italic">L. eucalypti</Emphasis> comb. nov. in Polyporaceae (Basidiomycota)

A new poroid wood-inhabiting fungal genus, Leifiporia, is proposed, based on morphological and molecular evidence, which is typified by L. rhizomorpha sp. nov. The genus is characterized by an annual growth habit, resupinate basidiocarps with white to cream pore surface, a dimitic hyphal system with generative hyphae bearing clamp connections and branching mostly at right angles, skeletal hyphae present in the subiculum only and distinctly thinner than generative hyphae, IKI–, CB–, and ellipsoid, hyaline, thin-walled, smooth, IKI–, CB– basidiospores. Sequences of ITS and LSU nrRNA gene regions of the studied samples were generated, and phylogenetic analyses were performed with maximum likelihood, maximum parsimony and Bayesian inference methods. The phylogenetic analysis based on molecular data of ITS + nLSU sequences showed that Leifiporia belonged to the core polyporoid clade and was closely related to Diplomitoporus overholtsii and Lopharia cinerascens, and then grouped with Pycnoporus and Trametes. Further investigation was obtained for more representative taxa in the Polyporaceae based on nLSU sequences, in which the results demonstrated that the genus Leifiporia formed a monophyletic lineage with a strong support (100 % BS, 100 % BP, 1.00 BPP). Both morphological and molecular evidence confirmed the placement of the new genus in the core polyporoid clade. In addition, a new combination, Leifiporia eucalypti, is proposed based on examination of its type material and phylogeny.     

<Emphasis Type="Italic">Subsessila turbinata</Emphasis> gen. et. sp. nov. (Beltraniaceae), a <Emphasis Type="Italic">Beltrania</Emphasis>-like fungus from Thailand

A new monotypic Beltrania-like genus, Subsessila, with its type species S. turbinata, is described, illustrated and compared with similar genera. The new genus is introduced in the family Beltraniaceae based on phylogenetic analysis and morphological characters. Subsessila can be easily distinguished from other Beltrania-like genera by dark setae arising from radially lobed basal cells, mostly lacking macronematous conidiophores. Conidiogenous cells are ampulliform or doliiform and produce turbinate to clavate conidia with rostrate proximal end and rounded distal end. Evidence for establishment of the new genus is provided based on morphological comparison and DNA sequence data analyses.     

A multivariate morphometric delimitation of species boundaries in the South American genus <Emphasis Type="Italic">Nicoraepoa</Emphasis> (Poaceae: Pooideae: Poeae)

A multivariate morphometric study of the genus Nicoraepoa was carried out to examine patterns of morphological variation among the species and to identify additional characters to allow a clearer delimitation among species. Nicoraepoa is a taxonomically complex genus comprising seven species endemic to South America. Although most of the species are well delimited, two of them, N. andina and N. chonotica, are morphologically similar and very difficult to separate. The morphological variation among species, with overlapping morphological characters, pseudovivipary and possible hybridization make species boundaries unclear. In the present paper, sixty-seven characters were scored for a total of 216 specimens and analyzed using ordination, cluster and discriminant analyses. Based on multivariate results, we recognized species groups and morphological diagnostic characters that allow clearer species delimitation. As a result, N. chonotica has been transferred to N. andina as a subspecies that inhabit southern Patagonia. Other taxa could be recognized and delimited by diagnostic characters: N. erinacea, N. pugionifolia, N. stepparia, N. subenervis subsp. spegazziniana and N. subenervis subsp. subenervis. Moreover, we discuss the possibility that a new species from Bolivia, based on only one specimen, closely related to N. subenervis should be ascribed in Nicoraepoa.     

A review of the genus <Emphasis Type="Italic">Deporaus</Emphasis> (Coleoptera,Rhynchitidae) from the Russian fauna: 2. Subgenera <Emphasis Type="Italic">Roelofsideporaus</Emphasis> and <Emphasis Type="Italic">Deporaus</Emphasis>

The subgenera Roelofsideporaus and Deporaus s. str. of the genus Deporaus with four species (D. affectatus, D. unicolor, D. nidificus, and D. betulae) recorded from the Russian fauna are revised. Keys to the species of the subgenus Roelofsideporaus and to the females of the subgenera Roelofsideporaus and Deporaus s. str. are given. The distribution of D. nidificus in Russia is not confirmed.     

Revision of the carabid genus <Emphasis Type="Italic">Meroctenus</Emphasis> Gemminger et Harold,with a new status of <Emphasis Type="Italic">Xenodochus</Emphasis> Andrewes (Coleoptera,Carabidae: Harpalini)

Originally described as a monotypical genus with unclear taxonomic position from Sudan, Meroctenus Gemminger et Harold, 1868 is treated as a polytypical genus of the Selenophori genus group with two subgenera: Meroctenus s. str. and Xenodochus Andrewes, 1941, stat. n. (the latter was previously considered a distinct genus). Within Meroctenus, two species are recognized: M. (Meroctenus) crenulatus Chaudoir, 1843 (type species) and M. (M.) mediocris (Andrewes, 1936), comb, n., transferred to Meroctenus s. str. from Xenodochus. A new subspecies M. (M.) crenulatus orientalis subsp. n. is described from Pakistan. Diagnoses of the genus Meroctenus in new interpretation as well as of its two subgenera are discussed, and a taxonomic review of the subgenus Meroctenus s. str. with a key to the species and subspecies is provided. The following synonymy is proposed: Meroctenus Gemminger et Harold, 1868 = Paregaploa Müller, 1947, syn. n.; Meroctenus crenulatus (Chaudoir, 1843) = Egaploa (Paregaploa) conviva Müller, 1947, syn. n. Lectotypes are designated for Ctenomerus crenulatus Chaudoir, 1843 and Xenodus mediocris Andrewes, 1936.     

Taxonomic delimitation of <Emphasis Type="Italic">Fulvifomes robiniae</Emphasis> (Hymenochaetales,Basidiomycota) and related species in America: <Emphasis Type="Italic">F. squamosus</Emphasis> sp. nov.

Morphological revision of Fulvifomes robiniae, as well as phylogenetic inferences based on nITS and nLSU markers, indicated that the species has a narrower concept in its morphology and distribution. Other morphologically related taxa arise from this taxonomic approach. Fulvifomes cedrelae is not accepted as a synonym of F. robiniae, and Fulvifomes squamosus sp. nov. is described as new based on Peruvian specimens. Based on morphology, phylogenetic relationships and host distributions, the taxonomic implication for the genus and other related taxa are discussed.     

Systematic studies in Neotropical <Emphasis Type="Italic">Rinorea</Emphasis> (Violaceae): Two new sections and a new generic segregate

Rinorea, the second most species-rich genus in the Violaceae, has been shown to be polyphyletic with four separate clades recovered in phylogenetic studies. Among these clades is the Rinorea crenata group, which is composed of three Neotropical species. This group has been shown in family- and genus-level molecular phylogenies to be resolved outside of a large clade representing Rinorea s.str. Based on phylogenetic, morphological, and anatomical evidence, Bribria, a new genus, is segregated from Rinorea s.str. and described, with new combinations made for its three species: Bribria apiculata, Bribria crenata, and Bribria oraria. In addition, two new sections in Rinorea s.str. are described to accommodate the remaining Neotropical species: Rinorea sect. Rinorea and Rinorea sect. Pubiflora, which correspond to Group IIa Rinorea and Group IIc Pubiflora, respectively, in W. H. A. Hekking’s monograph of Neotropical Rinorea.     

Evolution and systematics of Green Bush-crickets (Orthoptera: Tettigoniidae: <Emphasis Type="Italic">Tettigonia</Emphasis>) in the Western Palaearctic: testing concordance between molecular,acoustic, and morphological data

The genus Tettigonia includes 26 species distributed in the Palaearctic region. Though the Green Bush-crickets are widespread in Europe and common in a variety of habitats throughout the Palaearctic ecozone, the genus is still in need of scientific attention due to the presence of a multitude of poorly explored taxa. In the present study, we sought to clarify the evolutionary relationships of Green Bush-crickets and the composition of taxa occurring in the Western Palaearctic. Based on populations from 24 disjunct localities, the phylogeny of the group was estimated using sequences of the cytochrome oxidase subunit I (COI) and the internal transcribed spacers 1 and 2 (ITS1 and ITS2). Morphological and acoustic variation documented for the examined populations and taxa was interpreted in the context of phylogenetic relationships inferred from our genetic analyses. The trees generated in the present study supported the existence of three main lineages: “A”—composed of all sampled populations of Tettigonia viridissima and the Tettigonia vaucheriana complex, “B”—comprising Tettigonia caudata, Tettigonia uvarovi, and the Tettigonia armeniaca complex, and “C”—consisting of Tettigonia cantans. The present study provides the first phylogenetic foundation for reviewing the systematics of Tettigonia (currently classified mostly according to morphological characteristics), proposing seven new synonymies.     

Hidden diversity in the <Emphasis Type="Italic">Antrodia malicola</Emphasis> group (Polyporales,Basidiomycota)

Taxonomy of the Antrodia malicola group is revised based on DNA, morphological, ecological, and geographic data. This species complex is not related to Antrodia s. str. but constitutes its own lineage within the large Fomitopsis – Daedalea clade. The A. malicola group includes five species. Antrodia malicola s. str. is distributed in North America and East Asia, and a few records of this species are reported from Azores and Africa. Its European counterpart is A. kuzyana, comb. nova, with wider pores. Infraspecific variability of A. malicola and possible gene flow between it and A. kuzyana in East Asia are detected based on tef1 sequence data. Antrodia cyclopis, sp. nova, is described as a large-spored relative of A. malicola from New Guinea. Antrodia minuta is reported here from several European countries and Siberia, and its morphological characters and host preferences are discussed. Its close relative is A. tuvensis, sp. nova, from Central Siberia, an unusual member of the group with sparse, flexuous skeletal hyphae.     

Comparative analysis of complete chloroplast genome sequences of two subtropical trees, <Emphasis Type="Italic">Phoebe sheareri</Emphasis> and <Emphasis Type="Italic">Phoebe omeiensis</Emphasis> (Lauraceae)

Phoebe is an economically important genus from the family Lauraceae. It is widely distributed in tropical and subtropical Asia, but systematics of the genus is unclear, and currently there is no species-level phylogeny. Here, we determined the complete chloroplast genome sequences of two species with long-range PCR and next genome sequencing technologies, and identified mutation sites and highly variable regions. These highly variable sites were used to reconstruct the phylogeny. The plastomes of Phoebe sheareri and P. omeiensis were 152, 876, and 152, 855 bp, respectively. Comparative genomic analysis indicated that there are 222 mutation sites including 146 substitutions, 73 indels, and 3 microinversions in both plastomes. Fifty-six single-nucleotide changes were identified in gene-coding regions, and 45 microsatellite sites were found for use in species identification. Fourteen divergence hotspots of 38 variable regions were located. Phylogeny was reconstructed using a Bayesian and maximum likelihood approach for 12 Phoebe species and other five related Lauraceae based on 15 of the highly variable regions including accD-psaI, atpB-rbcL, ndhC-trnV, ndhF-rpl32, petA-psbJ, psaA, psbA-trnH, rbcL, rps8-rpl14, rps16-trnQ, rpl32-trnL, trnC-petN, trnL-trnF, trnS-trnG, and ycf1 indicated that variability in the chloroplast regions proposed as variable is enough to detect divergence events among 12 taxa of Phoebe, and that maybe also useful to help to elucidate further relationships among other taxa of the genus.     

Evolutionary relationships in the genus <Emphasis Type="Italic">Secale</Emphasis> revealed by DArTseq DNA polymorphism

Till this day, there is not much known about the phylogeny of the Secale genus; therefore, in our research, we tried to shed some lights on the issue of rye (Secale genus) taxonomy. The genetic diversity and phylogenetic relationships were evaluated using 13,842 DArTseq? polymorphic markers. The model-based clustering (STRUCTURE software) separated our 84 samples into three main clusters: perennial cluster, annual cluster, and S. sylvestre cluster. The same result was obtained using Neighbour Joining tree and self-organizing maps. Secale sylvestre, S. strictum, and S. cereale are the three main species of the Secale genus. Three samples of rye are in basal positions in phylogenetic trees. These accessions share ancient morphological characters and are probably the ancestors of different lineages within Secale. Annual Secale taxa, with the exception of S. sylvestre, create one mutual taxon. We have found out that the semi-perennial taxa of S. cereale var. multicaule and S. strictum subsp. ciliatoglume are genetically closest to the annual species of S. cereale. Phylogenetic signals for semi-perennial and annual taxa are also present in S. strictum subsp. africanum. SNP-based analysis revealed that evolution of annual S. cereale has already begun in S. strictum subsp. africanum. The results showed that S. vavilovii cannot be considered as a separate species but a subspecies of S. cereale Secale cereale subsp. dighoricum is a hybrid. It is still not clear whether we can consider S. strictum subsp. strictum and S. strictum subsp. kuprijanovii as two separate species.