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1.
Complete mitochondrial cytochrome b sequences of 54 species, including 18 newly sequenced, were analyzed to infer the phylogenetic relationships within the family
Cyprinidae in East Asia. Phylogenetic trees were generated using various tree-building methods, including Neighbor-joining
(NJ), Maximum Parsimony (MP) and Maximum Likelihood (ML) methods, with Myxocyprinus asiaticus (family Catostomidae) as the designated outgroup. The results from NJ and ML methods were mostly similar, supporting some
existing subfamilies within Cyprinidae as monophyletic, such as Cultrinae, Xenocyprinae and Gobioninae (including Gobiobotinae).
However, genera within the subfamily “Danioninae” did not form a monophyletic group. The subfamily Leuciscinae was divided
into two unrelated groups: the “Leuciscinae” in East Asia forming as a monophyletic group together with Cultrinae and Xenocyprinae,
while the Leuciscinae in Europe, Siberia, and North America as another monophyletic group. The monophyly of subfamily Cyprininae
sensu Howes was supported by NJ and ML trees and is basal in the tree. The position of Acheilognathinae, a widely accepted monophyletic
group represented by Rhodeus sericeus, was not resolved. 相似文献
2.
I investigated geographic variation in the Japanese white-toothed shrewCrocidura dsinezumi (Temminck, 1842) (Insectivora, Soricidae) from the Japanese Archipelago and the northern part of the Ryukyu Archipelago. Univariate and multivariate analyses were conducted based on 11 cranial measurements from 14 sampling localities. Overall size variation seemed to follow clinal changes correlated with latitude and longitude of localities, such that northeastern populations were smaller than southwestern ones. The Hokkaido population and the Kuchinoerabujima population were larger than expected based on estimated values, likely due to changes reflecting environmental factors. In contrast, the Tanegashima population was smaller than its estimated value. The northern Ryukyu populations were divergent from the Kyushu population and from each other. Based on patterns of geographic variation, I suggest that all previously described subspecies ofC. dsinezumi are junior synonyms ofC. dsinezumi; and that the Kuchinoerabujima population and the Nakanoshima population likely represent un- described subspecies. 相似文献
3.
Molecular phylogenetic relationships of Eastern Asian Cyprinidae (Pisces: Cypriniformes) inferred from cytochrome b sequences 总被引:12,自引:0,他引:12
Cyprinidae, the largest fish family, comprises ap-proximately 210 recognized genera and 2010 species that are distributed widely in Eurasia, East Indian Is-land, Africa, and North America[1]. Species richness of this family is the greatest in East Asia, for example, China has 122 genera and more than 600 species. It is difficult to build a comprehensive phylogeny of Cy-prinidae due to the large number of genera and species. The classification of this family has been subject to revisions an… 相似文献
4.
Mitochondrial DNA polymorphisms in 15 specimens of three species of slow lorises-Nycticebus coucang, N. intermedius, andN. pygmaeus-were analyzed in order to study the evolutionary relationships among the species. Eight restriction types were observed in the samples. Phylogenetic trees constructed on the basis of genetic distances showed that the slow lorises sort into two clusters: four types ofN. coucang and three types ofN. intermedius plus one type ofN. pygmaeus. Our results suggest that there are two valid species in the genusNycticebus-N. coucang, andN. pygmaeus-and thatN. intermedius should be included withinN. pygmaeus. Divergence between the two species may have begun 2.7 Ma (million years ago). Evolution of gross morphology, chromosomes, and mitochondrial DNA in the slow lorises appears to be concordant. 相似文献
5.
Ryuzo Fukao 《Ichthyological Research》1990,37(2):116-126
All the fish specimens ofNeoclinus bryope species complex collected from Okinawa Island including the 2 specimens already reported asN. bryope are referable toN. okazakii. Neoclinus nudus, hitherto known only from Taiwan, is newly recorded from Okinawa Island. These two species are redescribed on the basis of
the specimens from Okinawa Island. The specimens from Okinawa are compared with those from Shirahama in the case ofN. okazakii and with specimens from Taiwan as well asN. lacunicola andN. toshimaensis specimens from Shirahama in the case ofN. nudus. The habitats ofN. okazakii andN. nudus are clearly separated in the waters of Heshikiya, Okinawa Island and the habitat of either species is rather particular in
that it is exceptionally unoccupied by blenniids which are flourishing in the coastal waters of the Okinawa Islands. 相似文献
6.
Michel Pascal Olivier Lorvelec Frédéric Bioret Pierre Yésou Daniel Simberloff 《Acta theriologica》2009,54(1):39-49
To forecast the potential impact of plant community and dry-stone wall restoration on an insular population of the lesser
white-toothed shrewCrocidura suaveolens Pallas, 1811, shrew and house mouseMus musculus Linnaeus, 1758 abundances were assessed in 3 anthropogenic habitats on Béniguet Island, Brittany, France, by a standardised
annual trapping system checked yearly for 9 years and in 6 “natural” habitats by trap-lines. The standardised trapping system
showed that abundances of both species fluctuated synchronously for nine years, suggesting that interactions between the species
had little impact if any on abundances. Mice were trapped in all habitats, but shrews only in “stone” habitats except for
rare occurrences in one damp depression. Ruderal habitat was rarely used by either species. Data suggest that on Béniguet
Island: (1)M. musculus is associated with anthropogenic habitats but is not as strictly tied to them as at nearby continental sites; (2)C. suaveolens is synanthropic, as has been reported in continental northern France; (3) shingle beaches and seashore food resources are
particularly important forC. suaveolens; (4) the relationship betweenC. suaveolens andM. musculus could not be determined by the experiments and, if it exists at all, appears to be more competitive than predatory. Grassland
restoration is unlikely to affect shrew populations. Dry-stone wall restoration may temporarily affect shrews but should ultimately
benefit them. 相似文献
7.
The systematics ofScleromitrula andVerpatinia of the family Sclerotiniaceae is reevaluated on the basis of morphological, cultural and molecular criteria.Scleromitrula shiraiana, Verpatinia species andCiborinia candolleana share gross morphological, microanatomical and cultural features which clearly distinguish them from the closely relatedCiborinia andRutstroemia species. Phylogenetic analyses of sequences from the internal transcribed spacer region (ITS1, ITS2, and the 5.8S gene) of
nuclear ribosomal DNA demonstrate that the stipitate-capitate specimens ofScleromitrula andVerpatinia species plus the stipitate-cupulateCiborinia candolleana constitute a monophyletic clade separate from a clade including the type species ofCiborinia. Scleromitrula is emended to includeS. shiraiana, the new speciesS. rubicola, C. candolleana, and specimens formerly assigned toVerpatinia. A key to the accepted species ofScleromitrula is provided. 相似文献
8.
To better understand the patterns of variability and distributions ofHemerocallis in Korea, 53 locations were visited and measurements of 19 morphological and phenological characters were taken on plants
directly from their natural habitats. For morphometric analysis, 10 plants from each of 34 populations and five herbarium
specimens ofH. middendorffii were used and the data from 12 quantitative characters was analyzed using univariate analysis. Except the littoral populations
of Cheju, Hong, Taehuksan, and Sohuksan Islands (H. hongdoensis M. Chung & S. Kang), three peninsular KoreanHemerocallis species can be recognized mainly in South Korea:H. hakuunensis Nakai (=H. micrantha Nakai, growing on southern, central, and northwestern Korea);H. thunbergii Baker (=H. coreana Nakai, found on southeastern and central Korea); andH. middendorffii Tr. et Mey. (central and northeastern Korea). Morphological and phenological features contributing to recognition of the
three groups were; color of perianth, shape of roots, shape of inflorescence, flowering time, odor, length of inflorescence,
width of the lowest bracts, length of perianth tube enclosing a ovary, width of the inner perianth lobes. Natural hybridization
seems to be rare in KoreanHemerocallis. It appears that the KoreanHemerocallis species are relatively well characterized by their distribution patterns, phenology, and habitats compared with the JapaneseHemerocallis species. 相似文献
9.
Gibbons are small and arboreal apes restricted to southeastern tropical and southern subtropical regions in Asia. They are
distributed from Assam in the northwest, eastward to south China and Vietnam, south through the Malay Peninsula to Sumatra,
Borneo, Java, and the Mentawai Islands. Twenty-two genetically distinct populations of gibbons are generally recognized.
Gibbons were once widely distributed in China; however, they are now primarily restricted to southern and southwestern Yunnan
and Hainan Island. Their widest distribution and greatest species diversity is in Yunnan Province. Gibbons are rare in China
and are now listed as a first class endangered species.
Four gibbon species inhabit Yunnan Province in southern China. They areH. hoolock, H. lar, H. leucogenys, andH. concolor. There are three subspecies ofH. leucogenys: H. l. leucogenys, H. l. siki, andH. l. gabriellae. OnlyH. l. leucogenys inhabits China. Four subspecies ofH. concolor inhabit China. These areH. c. concolor, H. c. jingdongensis, H. c. furvogaster, andH. c. hainanus. The first three subspecies inhabit Yunnan andH. c. hainanus is found only on Hainan Island.H. lar yunnanensis is the subspecies ofH. lar in southern China.H. hoolock leucogenys is the subspecies ofH. hoolock in southern China.H. concolor jingdongensis, H. concolor furvogaster, andH. lar yunnanensis are all newly proposed subspecies byMa andWang (1986).
The data on southern China gibbons presented here is based on an analysis of the skeletons and skins of 49 specimens held
at the Kunming Institute of Zoology, Kunming, Yunnan. 相似文献
10.
Two new homothallic species ofPichia, associated with exudates ofPopulus trichocarpa andSalix sp. have been described.Pichia trehalophila sp.n. was isolated from slime exudates in two widely separatedPopulus trichocarpa trees andPichia salictaria sp.n. was isolated from two exudates ofSalix sp. The latter species was previously present as an unidentified strain ofPichia in the culture collection of the Centraalbureau voor Schimmelcultures and had been isolated from a patient in Germany. The natural habitat ofP. salictaria is considered to be in association with willow trees. 相似文献
11.
Phylogenetic relationships of mushrooms and their relatives within the order Agaricales were addressed by using nuclear large subunit ribosomal DNA sequences. Approximately 900 bases of the 5' end of the nucleus-encoded large subunit RNA gene were sequenced for 154 selected taxa representing most families within the Agaricales. Several phylogenetic methods were used, including weighted and equally weighted parsimony (MP), maximum likelihood (ML), and distance methods (NJ). The starting tree for branch swapping in the ML analyses was the tree with the highest ML score among previously produced MP and NJ trees. A high degree of consensus was observed between phylogenetic estimates obtained through MP and ML. NJ trees differed according to the distance model that was used; however, all NJ trees still supported most of the same terminal groupings as the MP and ML trees did. NJ trees were always significantly suboptimal when evaluated against the best MP and ML trees, by both parsimony and likelihood tests. Our analyses suggest that weighted MP and ML provide the best estimates of Agaricales phylogeny. Similar support was observed between bootstrapping and jackknifing methods for evaluation of tree robustness. Phylogenetic analyses revealed many groups of agaricoid fungi that are supported by moderate to high bootstrap or jackknife values or are consistent with morphology-based classification schemes. Analyses also support separate placement of the boletes and russules, which are basal to the main core group of gilled mushrooms (the Agaricineae of Singer). Examples of monophyletic groups include the families Amanitaceae, Coprinaceae (excluding Coprinus comatus and subfamily Panaeolideae), Agaricaceae (excluding the Cystodermateae), and Strophariaceae pro parte (Stropharia, Pholiota, and Hypholoma); the mycorrhizal species of Tricholoma (including Leucopaxillus, also mycorrhizal); Mycena and Resinomycena; Termitomyces, Podabrella, and Lyophyllum; and Pleurotus with Hohenbuehelia. Several groups revealed by these data to be nonmonophyletic include the families Tricholomataceae, Cortinariaceae, and Hygrophoraceae and the genera Clitocybe, Omphalina, and Marasmius. This study provides a framework for future systematics studies in the Agaricales and suggestions for analyzing large molecular data sets. 相似文献
12.
Phylogenetic relationships of Northeast Asian cattle to various other cattle breeds including Bos taurus, Bos indicus, and Bison bison were assessed using mtDNA D-loop sequences. A neighbor-joining tree was constructed using sequences determined for 4 Cheju Black, 4 Cheju Yellow, 4 Korean Yellow cattle (Bos taurus), and 2 American Brahman cattle (Bos indicus), and also published sequences for 31 Japanese Black cattle, 45 European breed cattle, 6 African zebus, 2 African taurines, and 6 Indian zebus. Five American bisons (Bison bison) were used as an outgroup. The neighbor-joining tree showed that American bisons and Indian zebus are clearly separate from other cattle breeds, respectively, and African cattle clustered together, although with a low bootstrap probability (<50%). Results indicate that cattle in Northeast Asia, Europe, and Africa are closely related to each other–suggesting their recent divergence, but are separate from Indian zebus. 相似文献
13.
The phylogenetic positioning of the non-pathogenic genusSpiromastix in the Onygenales was studied based on large subunit rDNA (LSU rDNA) partial sequences (ca. 570 bp.). FourSpiromastix species and 28 representative taxa of the Onygenales were newly sequenced. Phylogenetic trees were constructed by the neighbor-joining
(NJ) method and evaluated by the maximum parsimony (MP) method with the data of 13 taxa retrieved from DNA databases.Spiromastix and dimorphic systemic pathogens,Ajellomyces andParacoccidioides, appear to be a monophyletic group with 74% bootstrap probability (BP) in the NJ tree constructed with the representative
taxa of the Onygenales. The tree topology was concordant with the NJ tree based on SSU rDNA sequences of our previous work
and corresponded to the classification system of the Onygenales by Currah (1985) and its minor modification by Udagawa (1997)
with the exception of the classification of the Onygenaceae. The Onygeneceae sensu Udagawa may still be polyphyletic, since
three independent lineages were recognized. The taxa forming helicoid peridial appendages were localized to two clades on
the tree. The topology of the NJ tree constructed withSpiromastix and its close relatives suggested that the helicoid peridial appendages were apomorphic and acquired independently in the
two clades of the Onygenales. 相似文献
14.
Barna Páll-Gergely 《Molluscan research.》2019,39(2):190-193
ABSTRACTThe alycaeid Cyclostoma spiracellum Adams & Reeve, 1850 (currently Dicharax spiracellum) was described from Borneo, based on shells from the expedition of HMS Samarang (1843–1846). A comparison with material of nearly all alycaeid species revealed that D. spiracellum is conchologically identical to Alycaeus kurodai Pilsbry & Hirase, 1908, which is described from the Korean Cheju Island. The land operculate snail fauna of Korea and Borneo do not overlap, and D. spiracellum has not been found in Borneo in spite of intensive recent collecting efforts. Therefore, it must be concluded that D. spiracellum does not occur in Borneo and that it was probably obtained when the Samarang visited Cheju Island, and the specimens were most likely mislabelled. As a result, A. kurodai is considered herein as a junior synonym of C. spiracellum, and the type locality of C. spiracellum (Borneo) is corrected to ‘probably Cheju Island, South Korea’. Chamalycaeus kurodai duplicatus Kuroda & Miyanaga, 1943 is treated as Dicharax spiracellum duplicatus (Kuroda & Miyanaga, 1943). 相似文献
15.
We examined the skulls of 72 bottlenose dolphins from the Indian and western Pacific Oceans to clarify the systematics in
genusTursiops. We also examined type skulls ofTursiops aduncus (Ehrenberg, 1832),T. eurynome (Gray, 1846),T. catalania (Gray, 1862),Delphinus (Steno) gadamu Owen 1866,T. dawsoni Lydekker 1908, andT. truncatus (Montagu, 1821). The specimens were divided into two groups, A and B, based on rostrum length and characters of the basal
part of the rostrum. The rostrum of group A was longer and tapered abruptly near the base, whereas that of group B was shorter
and tapered more gradually throughout its length. Group A contained specimens from western, central, and eastern Asia, Africa,
and Australasia. Group B contained specimens from central and eastern Asia and Australasia. The six type skulls were also
clearly divided into two groups; the type skulls ofT. aduncus, T. catalania, andDelphinus (Steno) gadamu were included in group A, whereas the type skulls ofT. truncatus, T. eurynome, andT. dawsoni were included in group B. This grouping was consistent with the genetic status. Therefore, we identified group A specimens
asT. aduncus and group B specimensT. truncatus, the oldest scientific names related to the two groups. 相似文献
16.
【目的】构建天牛总科高阶元的进化关系,为解决天牛各亚科之间进化关系和归属提供依据。【方法】本研究采用18S rDNA(V4、V7区)分子标记,分析和测定了49种天牛基因序列,并结合GenBank数据库中3科2亚科21种天牛的18S rDNA基因序列,采用邻近法(Neighbor Jointing,NJ)、贝叶斯推论法(Bayesian Inference,BI)和最大似然法(Maximum Likelihood),对天牛总科3科6亚科的70种天牛基因序列构建进化树,探讨天牛高阶元类群的进化关系。【结果】研究表明:序列分析比对后得到序列为703 bp,碱基A、T、C、G的含量分别为21.1%、26.3%、23.6%和28.9%;变异位点(Variable sites)98个占全部位点的13.9%,简约信息位点(Parsimony informative sites)45个占全部位点的6.4%;转换(Transition)/颠换(Transversion)的平均值R值为2.79,转换大于颠换。进化树结果显示沟胫天牛亚科Lamiinae、天牛亚科Cerambycinae、锯天牛亚科Prioninae和瘦天牛科Disteniidae为单系性进化群,这与传统形态学分类结果相似。【结论】本研究成功构建了天牛总科高阶元的系统发育树,研究证明18S rDNA(V4、V7区)是探讨天牛高级阶元分类有效的分子标记。 相似文献
17.
Edward E. Schilling Jose L. Panero Patricia B. Cox 《Plant Systematics and Evolution》1999,219(3-4):209-223
Chloroplast DNA (cpDNA) restriction site analysis was used to assess relationships among samples of Eupatorieae from eastern North America. A total of 270 cpDNA variants was recorded from 35 species using 13 restriction enzymes. Phylogenetic analysis usingGalinsoga, Flaveria, andHelianthinae as outgroups indicated that samples ofAgeratina, Hofmeisteria, Mikania, andStevia, each of which have relatively high base chromosome numbers, formed an unresolved basal polytomy. The remaining samples examined formed a well-supported clade, within which there was a split betweenBrickellia, which hasx = 9, and a number of genera withx = 10. Within thex = 10 clade, there was an unresolved trichotomy, with one group ofAgeratum, Conoclinium, Fleischmannia, andCritonia, a second ofLiatris andTrilisa, and a third ofEupatorium s.s. Within theEupatorium s.s. clade there were three further clades, withE. sect.Verticillata diverging first, and a subsequent split between species originating from North America and those from Asia. The cpDNA restriction site data provided support for a relatively narrow interpretation ofEupatorium, and indicated that a high chromosome base number is plesiomorphic for Eupatorieae. 相似文献
18.
Ki-Joong Kim 《Plant Systematics and Evolution》1999,218(1-2):113-123
Phylogenetic relationships of ten wild species and several cultivars ofForsythia were reconstructed based on the chloroplast (cp) DNA variation. A total of 216 cpDNA variants, 44 of which were potentially phylogenetically informative, was detected using 24 restriction endonucleases. Phylogenetic analysis usingFontanesia andAbeliophyllum as outgroups revealed four well defined species groups in the genus: 1)F. suspensa, 2)F. europaea — F. giraldiana, 3)F. ovata — F. japonica — F. viridissima, and 4)F. koreana — F. manshurica — F. saxatilis. The amount of support for each monophyletic group was evaluated by various methods including character number, decay analysis, parsimony bootstrapping, Neighbour-Joining (NJ) — bootstrapping, NJ-jackknifing, and the topology-dependent permutation tail probability (T-PTP) test. The data do not support the hybrid origin ofF. intermedia fromF. suspensa andF. viridissima. The disjunctly distributed European species,F. europaea, was identified as a sister species of the ChineseF. giraldiana and it was probably derived through recent long distance dispersal. 相似文献
19.
Dominique A. Didier 《Ichthyological Research》1998,45(3):281-289
A new species ofChimaera is described from three specimens collected from deep water fishing grounds off the North Island of New Zealand at depths
ranging from 327–1020 m. This species is distinguished from all other members of the genus by gray coloration with chocolate
brown reticulations and spots covering the body and fins, as well as additional external features such as rounded pelvic fins,
first dorsal fin with distinct white margin, preopercular and oral lateral line canals sharing a common branch, and morphology
of pelvic claspers in males bifid, the distal 1/3 divided, with pale colored fleshy, distal lobes. Comparisons are made toC. monstrosa andC. owstoni, the two most similar species in the genus. this represents the first species ofChimaera to be described from New Zealand. 相似文献
20.
Three deciduous broad-leaved trees, Quercus serrata, Castanea crenata and Carpinus laxiflora, were the main constituents of a coppice forest in central Japan. The shoot elongation and leaf emergence modes of both saplings
and the canopy of the three species were investigated. The shoot elongation modes of Q. serrata and C. crenata were the same in saplings and the upper layer of the canopy. The second shoots of these two species were formed after the
first shoots were elongated. C. laxiflora was different between saplings and the upper layer of the canopy. In saplings, only the first shoots took a long time to
elongate. In the upper canopy layer, higher order shoots were formed in the same way as in the other two species. In the lower
layer of the canopy, all three species showed the same shoot elongation mode, in which only the first shoot and its duration
of elongation was short. Leaf longevity, individual leaf area, leaf mass per unit leaf area and the stem mass per unit stem
length of C. laxiflora were significantly shorter or significantly smaller than those of Q. serrata and C. crenata. The length of the stem per unit leaf area of C. laxiflora was three times that of Q. serrata and five times that of C. crenata. The elongation growth of C. laxiflora was highly efficient as it occurred with a small leaf area. The shoot dynamics and the shoot structure of C. laxiflora are more suitable for elongation growth than in Q. serrata and C. crenata. Furthermore, the shoot structures of the three species were compared and ecological characteristics of the three species
are discussed.
Received: 29 September 1998 / Accepted: 17 September 1999 相似文献