Speciation of Eversmann and Mongolian hamsters (<Emphasis Type="Italic">Allocricetulus</Emphasis>, Cricetinae): Experimental hybridization

Contrary to the pre-existing concepts based on morphological and karyological data on the impossibility of hybridization between hamster species of the genus Allocricetulus (A. curtatus and A. eversmanni), F1 hybrids in both combinations, and backcrosses, were obtained for the first time. Some restrictions of hybridization between females of A. eversmanni and males of A. curtatus were detected. Analysis of the synaptonemal complex in the hybrids produced by crossing a female of A. curtatus with a male of A. eversmanni demonstarted that a significant portion of the cells was subject to arrest and selection at the stage of meiosis prophase I. Nevertheless, some spermatocytes still generate viable spermatozoa. Thus, the possibility of hybridization in the laboratory between two Allocricetulus species with different numbers of chromosomes may testify to a relatively low divergence between them.     

Genetic variation and differentiation in populations of Japanese emperor oak <Emphasis Type="Italic">Quercus dentata</Emphasis> Thunb. and Mongolian oak <Emphasis Type="Italic">Quercus mongolica</Emphasis> Fisch. ex Ledeb.) in the south of the Russian Far East

Allozyme variation of Japanese emperor oak Quercus dentata Thunb. and Mongolian oak Quercus mongolica Fisch. ex Ledeb.) was examined in 11 populations of these species from southern Primorye. Analysis of 18 loci showed that in these populations, 66.7% of genes of Mongolian oak are polymorphic, the number of alleles per locus being 2.28. In Japanese emperor oak, these parameters were respectively 59.8 and 2.36%. The observed heterozygosity in both species did not differ from the expected values, constituting 0.198 in Japanese emperor oak and 0.161 in Mongolian oak. The Nei’s distance between Quercus mongolica and Q. dentata was 0.053. The main contribution to the species differentiation is made by loci Lap-1, Idh-1, Pgm-1, and Ndh-1, although none of them is diagnostic. The Japanese emperor oak and Mongolian oak populations formed separate clusters in an UPGMA dendrogram. Taking into account morphological and ecological isolation of the species, we suggest that the differences in gene frequencies may reflect selection acting in favor of adaptation to different growth conditions and counteracting between-species hybridization.     

Taxonomic position of Afghan vole (Subgenus <Emphasis Type="Italic">Blanfordimys</Emphasis>) by the sequence of the mitochondrial <Emphasis Type="Italic">cytb</Emphasis> gene

It is rather difficult to construct a system of gray voles of the tribe Microtini by a set of morphological and karyological characters because form generation is mosaic at these organization levels. The sequence of the mitochondrial cytochrome b gene was used to study the phylogenetic relationships and taxonomic position of the Central Asian subgenus Blanfordimys. Afghan vole Microtus (Blanfordimys) afghanus and Bucharian vole M. (Blanfordimys) bucharensis clustered with Pamir vole M. (Neodon) juldaschi, which is conventionally assigned to another subgenus. The last two species proved to be significantly closer to each other than either of them was to M. (Blanfordimys) afghanus, which disagrees with the monophyletic origin accepted for Blanfordimys. The genetic distances between the species of the subgenus Blanfordmys and M. juldaschi were comparable with the distances between the sister subgenera Microtus s. str. and Sumeriomys or Pallasiinus and Alexandromys and with the basal divergence of supraspecific clades in the subgenus Terricola. It was assumed that a special Central Asian group of species exists within the tribe Microtini and includes species of the subgenus Blanfordimys and M. juldaschi and that the subgenera Neodon and Blanfordimys should be revised.     

Seasonal variations of the photosynthetic activity and pigment concentrations in different reproductive phases of <Emphasis Type="Italic">Gigartina skottsbergii</Emphasis> (Rhodophyta,Gigartinales) in the Magellan region,sub-Antarctic Chile

Seasonal environmental changes may significantly influence macroalgal diversity and biomass. Cryptogam species richness increases towards the poles, especially in sub-Antarctic environments. Yet, subpolar seaweed biodiversity and ecophysiology remain understudied even though it is essential for the management and sustainability of endemic species of significant economic interest (e.g., Gigartina skottsbergii). We evaluate the seasonality and ecophysiology of the different life phases of the rhodophyte G. skottsbergii by analyzing variation in fluorescence yield and photosynthetic pigment composition. There were significant seasonal differences in maximum relative electron transport rate (rETR_max) between gametophyte and tetrasporophyte phase, and between reproductive and vegetative specimens. Photosynthetic efficiency (α) was not significantly different between reproductive states of G. skottsbergii. We found significant differences in mean concentrations of allophycocyanin (APC), phycocyanin (PC), and chlorophyll a (Chl a) between gametophyte and tetrasporophyte phases. Results obtained provide new insight into seasonal acclimation patterns of an ecologically important species, which can be used for the design of appropriate management and cultivation strategies of G. skottsbergii towards the restoration of natural populations in fragile, subpolar regions where some of the last, relatively undisturbed communities of G. skottsbergii still remain.     

A RAPD fingerprinting of sibling species of the <Emphasis Type="Italic">Drosophila virilis</Emphasis> group

A comparative analysis of the sibling species of Drosophila virilis was performed by RAPD-PCR technique using a set of random primers. The degree of relatedness was studied by cluster analysis (UPGMA) and multidimensional scaling. The resulting pattern of species relationships contradicts the classical taxonomy. The main result of the cluster analysis is that D. virilis does not cluster with the remaining three species of its phylad, while according to multidimensional scaling, D. virilis is equidistant from all the species of its group, from both the species of its phylad and the species of the montana phylad. The montana phylad is extremely heterogeneous; moreover, the species D. littoralis, D. ezoana, and D. kanekoi appear to be closer to the virilis phylad than to the other species of the montana phylad, wherein these species are traditionally included. The phylogenetic relationships between the studied species discovered using RAPD fingerprinting comply with the results obtained using protein markers and quantitative traits.     

Larval identification of two syntopic species <Emphasis Type="Italic">Branchipus schaefferi</Emphasis> and <Emphasis Type="Italic">Tanymastix stagnalis</Emphasis> (Crustacea,Anostraca) sheds light on their pattern of coexistence

In the present study we applied a discriminant function analysis to distinguish two fairy shrimp species, Branchipus schaefferi and Tanymastix stagnalis (Anostraca), co-occurring in Lago dell’Orso in central Italy. Our aim was to obtain information on the pattern of coexistence of these two species to investigate their syntopy since early larval stages. To identify the larvae of the two species we used six discriminant functions, one for each larval stage considered (nauplius, four metanauplius stages and juvenis), and based on morphometric analyses and measurements of different traits (thoracic appendages, body length, length of first antenna, length of head, thorax length and length of furca). The pool was visited at weekly intervals during two time periods for a total of 4 years (1995–1996 and 2000–2001) and physical and chemical variables (water level, water and air temperature, pH and conductivity) were recorded. A total of 1067 specimens were collected, measured and morphometrically identified. B. schaefferi was more abundant and persistent than T. stagnalis. At any stage, T. stagnalis was bigger than B. schaefferi and this difference may justify niche differentiation between coexisting species. Difference in size might be linked to difference in life-span as B. schaefferi reproduced earlier and at a smaller size than T. stagnalis. When the hydroperiod is short, B. schaefferi might be the only species to produce resting eggs in time for reproduction. On the other hand, T. stagnalis may have an advantage in the longest hydroperiods. In an ephemeral seasonal pond such as Lago dell’Orso, coexistence can be fostered and competitive exclusion can be prevented as a result of seasonal environmental changes.     

Frugivore assemblage of <Emphasis Type="Italic">Ficus superba</Emphasis> in a warm-temperate forest in Yakushima,Japan

Understanding fig consumption patterns is important because figs are regarded as a keystone resource for many frugivorous species in the tropics. While much work on fig consumption has been conducted in tropical regions, temperate forests are particularly interesting for study owing to pronounced seasonal variations in temperature and community-level fruiting phenology. We studied frugivore consumption of Ficus superba (Miq.) Miq. var. japonica Miq syconia in a warm-temperate forest in Yakushima, southern Japan. We conducted 141 4-h focal observations of fruiting F. superba trees over 12 months. We aimed to assess the relative quantitative contribution of each species of frugivore to F. superba consumption over a year as well as factors affecting seasonal variation in consumption. Japanese macaques were by far the most important F. superba syconia consumer (87.6 %), followed by brown-eared bulbuls (5.0 %), and varied tits (4.2 %). Japanese macaques increased their F. superba consumption when the temperature was high and fruit availability (F. superba and other species) was low. Macaques seemed to avoid searching for rare F. superba trees during winter and used F. superba syconia as a fallback food during fruit scarcity. Birds showed the opposite pattern: they increased F. superba syconia consumption when the temperature was low and fruit availability was high. This was probably because birds eat insects as their main food in the summer and switch to fruit as autumn turns to winter.     

Seasonal analysis of the tropane alkaloid ecgonine methyl ester and the occurrence of other highly-valued tropanes in the South African <Emphasis Type="Italic">Erythroxylum</Emphasis> trees

The coca family (Erythroxylaceae) consists of trees and shrubs sub-divided into four genera: Aneulophus, Nectaropetalum, Pinacopodium, and Erythroxylum, which include species with highly valuable medicinal compounds. E. delagoense, E. emarginatum, and E. pictum are endemic to southern Africa and have great pharmaceutical potential based on their traditional uses. Previous studies have shown certain inconsistencies in terms of the presence or absence of tropane alkaloids in these species, resulting in a need for further research and clarification. Therefore, the aim of this study was to determine the seasonal variation of the immediate biosynthetic precursor of cocaine, the tropane alkaloid, ecgonine methyl ester in the three South African Erythroxylum species by means of gas chromatography–mass spectrometry, as well as to conduct a phytochemical screening for observing the presence of other potential compounds and tropane alkaloids. We found significant differences in tropane concentrations from the seasonal variation study, explaining the discrepancies in previous reports on its presence/absence in these species. Furthermore, we report for the first time on the occurrence of selected highly valuable tropane alkaloids in E. emarginatum currently used in ‘blockbuster medicine’.     

Floral divergence and temporal pollinator partitioning in two synchronopatric species of <Emphasis Type="Italic">Vigna</Emphasis> (Leguminosae-Papilionoideae)

Exclusivity of pollinators, temporal partitioning of shared pollinators and divergence in pollen placement on the shared pollinators’ bodies are mechanisms that prevent interspecific pollen flow and minimize competitive interactions in synchronopatric plant species. We investigated the floral biology, flower visitors, pollinator effectiveness and seasonal flower availability of two syntopic legume species of the genus Vigna, V. longifolia and V. luteola, in ‘restinga’ vegetation of an island in southern Brazil. Our goal was to identify the strategies that might mitigate negative consequences of their synchronous flowering. Vigna longifolia and V. luteola were self-compatible, but depended on pollinators to set seeds. Only medium to large bees were able to trigger the ‘brush type’ pollination mechanism. Vigna longifolia, with its asymmetrical corolla and hugging mechanism, showed a more restrictive pollination system, with precise sites of pollen deposition/removal on the bee’s body, compared to V. luteola, with its zygomorphic corolla and cymbiform keel. There was a daily temporal substitution in flower visitation by the main pollinators. Vigna longifolia and V. luteola had overlapping flowering phenology but the densities of their flowers fluctuated, resulting in a seasonal partitioning of flower visitation. The differences in corolla symmetry and mainly the temporal partitioning among pollinators throughout the day and the flowering season proved to be important factors in maintaining the synchronopatry of V. longifolia and V. luteola.     

Comparative analysis of fecal microflora of healthy full-term Indian infants born with different methods of delivery (vaginal vs cesarean): <Emphasis Type="Italic">Acinetobacter</Emphasis> sp<Emphasis Type="Italic">.</Emphasis> prevalence in vaginally born infants

In this study fecal microflora of human infants born through vaginal delivery (VB) and through cesarean section (CB) were investigated using culture-independent 16S rDNA cloning and sequencing approach. The results obtained clearly revealed that fecal microbiota of VB infants distinctly differ from those in their counterpart CB infants. The intestinal microbiota of infants delivered by cesarean section appears to be more diverse, in terms of bacteria species, than the microbiota of vaginally delivered infants. The most abundant bacterial species present in VB infants were Acinetobacter sp., Bifidobacterium sp. and Staphylococcus sp. However, CB infant’s fecal microbiota was dominated with Citrobacter sp., Escherichia coli and Clostridium difficile. The intestinal microbiota of cesarean section delivered infants in this study was also characterized by an absence of Bifidobacteria species. An interesting finding of our study was recovery of large number of Acinetobacter sp. consisting of Acinetobacter pittii (former Acinetobacter genomic species 3), Acinetobacter junii and Acinetobacter baumannii in the VB infants clone library. Among these, Acinetobacter baumannii is a known nosocomial pathogen and Acinetobacter pittii (genomic species 3) is recently recognized as clinically important taxa within the Acinetobacter calcoaceticus–Acinetobacter baumannii (ACB) complex. Although none of the infants had shown any sign of clinical symptoms of disease, this observation warrants a closer look.     

New host species and new distribution areas of <Emphasis Type="Italic">Salmincola lavaretus</Emphasis> (Copepoda: Lernaeopodidae): A parasite of coregonid fishes of Siberia

Data on the infestation of certain fish species by the parasitic copepod Salmincola lavaretus are presented for the first time. The infested fish species included Bauntovsky whitefish (Coregonus baunti), an endemic species from the Maloye and Bolshoye Kapylyushi lakes; Siberian whitefish (C. pidschian) and Siberian cisco (C. sardinella) from Bolshoye Kapylyushi Lake and Baunt Lake, which belong to the Tsypo-Tsypikan lake system (the Lena River basin, Transbaikalia); and Teletsky whitefish (C. lavaretus natio smitti) from Teletskoe Lake (the Ob River basin). Previously, S. lavaretus had been described as a parasite of Baikal omul (C. migratorius) and Baikal whitefish (C. baicalensis) from Baikal. The taxons of S. longimanus complex (S. longimanus, S. l. sibirica, S. svetlanovi, and S. lavaretus)—parasites of nasal fossae of grayling and coregonid fishes—were registered in the lakes of the Lake Baikal basin (Lake Baikal and Khovsgol Lake), the Lena River, the Yenisei and the Ob rivers (the largest rivers of the Arctic zoogeographic province), and the Kobdo River (the Western Mongolian province). It was assumed that S. longimanus complex is more widely distributed in the water bodies of the Arctic zoogeographic province of the Palearctic.     

The Seasonal Dynamics of <Emphasis Type="Italic">Cystoseira crinita</Emphasis> Duby, 1830 (Fucales: Phaeophyceae)-Dominated Communities in the Northeastern Black Sea

The structure and seasonal dynamics of marine algal communities dominated by Cystoseira crinita Duby, 1830 were studied in the northeastern Black Sea at depths of 2, 5, and 10 m. Seasonal fluctuations were found to be mainly manifested in biomass changes of the dominant species C. crinita at depths of 2 and 5 m. No seasonal changes in the studied parameters of communities were found at a depth of 10 m. The mean annual production of C. crinita was 1472.3 g/m², with the maximum at a depth of 5 m (2148.1 g/m²). The minimum production was observed at a depth of 10 m. At all depths, the production of C. crinita was highest in the spring; this index had zero values in the fall and winter.     

<Emphasis Type="Italic">Coregonus peled</Emphasis> (Gmelin) transplanted into Ulaagchny Khar lake (western mongolia) showed no evidence of hybridization with other introduced <Emphasis Type="Italic">Coregonus</Emphasis> species

Coregonus peled (Gmelin) (Teleostei: Salmoniformes: Coregonidae), which is considered an important object of coldwater aquaculture, had been successfully introduced into an enclosed Western Mongolian lake Ulaagchny Khar in the early 1980s. At the same time larvae of two other Coregonus species—Baikal omul C. migratorius (Georgi) and least cisco C. sardinella Valenciennes—had also been released into the lake. Baikal omul was then reported as a naturalized species. This might have caused interspecific hybridization and gene introgression. Identification of coregonids by morphology can be problematic, so to determine which species was dominant in the lake (we presumed it was peled) and if its gene pool was affected by other introduced Coregonus species we sampled 40 individuals and analyzed them by sequencing a fragment of mtDNA cyt b and by allozyme electrophoresis. The analysis showed that all the fish belonged to C. peled with no evidence of admixture from other coregonid species. Taking into account mass release of both species in 1980s, it is evident that naturalization of peled in the lake was much more successful than that of Baikal omul.     

Functional morphology of blood erythroid cells in <Emphasis Type="Italic">Neogobius melanostomus</Emphasis> P. during cell differentiation

The morphometric characteristics of the following immature erythroid cells in circulating blood of the round goby (Neogobius melanostomus P.) were studied: late basophilic normoblasts (BN), polychromatic normoblasts (PN): normocytes (mature erythrocytes). The linear dimensions of the blood cells were evaluated on photographs in a computer program ImageJ 1.44p. The longitudinal and transverse axes of the cell and its nucleus were measured. Using appropriate algorithms, the following parameters were calculated: shape index (SI), volume (V_c), area (S_c), thickness (h), and specific surface area (SS_c) of cells and nuclei as well as the nuclear–cytoplasmic ratio (NCR). Major changes were found to occur at the stage of PN → normocytes, being aimed at improving the respiratory characteristics of cells. In addition to accumulating hemoglobin in the cytoplasm and suppressing functional activity of the nucleus, a significant increment in the diffusion surface of erythroid cells was noted. As compared to BNs, S_c and SS_c of normocytes increased by 40 and 17%, respectively, while the cells assumed an ellipsoid shape. The processes underlying the formation of the mature erythrocyte cytoskeleton are discussed.     

New microsatellite markers developed from <Emphasis Type="Italic">Urochloa humidicola</Emphasis> (Poaceae) and cross amplification in different <Emphasis Type="Italic">Urochloa</Emphasis> species

Background

Urochloa humidicola is a forage grass that grows in tropical regions and is recognized for its tolerance to seasonal flooding. It is a polyploid and apomictic species with high phenotypic plasticity. As molecular tools are important in facilitating the development of new cultivars and in the classification of related species, the objectives of this study were to develop new polymorphic microsatellite markers from an enriched library constructed from U. humidicola and to evaluate their transferability to other Urochloa species.

Findings

Microsatellite sequences were identified from a previously constructed enriched library, and specific primers were designed for 40 loci. Isolated di-nucleotide repeat motifs were the most abundant followed by tetra-nucleotide repeats. Of the tested loci, 38 displayed polymorphism when screened across 34 polyploid Urochloa sp. genotypes, including 20 accessions and six hybrids of U. humidicola and two accessions each from U. brizantha, U. dictyoneura, U. decumbens and U. ruziziensis. The number of bands per Simple Sequence Repeat (SSR) locus ranged from one to 29 with a mean of 11.5 bands per locus. The mean Polymorphism Information Content (PIC) of all loci was 0.7136, and the mean Discrimination Power (DP) was 0.7873. Six loci amplified in all species tested. STRUCTURE analysis revealed six different allelic pools, and the genetic similarity values analyzed using Jaccard's coefficient ranged from 0.000 to 0.913.

Conclusions

This work reports new polymorphic microsatellite markers that will be useful for breeding programs for Urochloa humidicola and other Urochloa species as well as for genetic map development, germplasm characterization, evolutionary and taxonomic studies and marker-assisted trait selection.

     

Disentangling the effects of isolation-by-distance and isolation-by-environment on genetic differentiation among <Emphasis Type="Italic">Rhododendron</Emphasis> lineages in the subgenus <Emphasis Type="Italic">Tsutsusi</Emphasis>

Ecological speciation has long been noted as a central topic in the field of evolutionary biology, and investigation into the relative importance of ecological and geographical factors is becoming increasingly emphasized. We surveyed genetic variation of 277 samples from 25 populations of nine Rhododendron species within Tsutsusi subgenus in Taiwan using simple sequence repeats of expressed sequence tags. Bayesian clustering revealed four genetic lineages: (1) the Rhododendron simsii, Rhododendron kanehirai, and Rhododendron nakaharae lineage (lineage 1); (2) the Rhododendron longiperulatum, Rhododendron breviperulatum, and Rhododendron noriakianum lineage (lineage 2); (3) the Rhododendron rubropilosum lineage (lineage 3); and (4) the Rhododendron oldhamii lineage (lineage 4). Asymmetric introgressions were found from lineage 3 into lineages 1 and 2 (introgressed lineages). Genetic admixture of non-R. oldhamii species was also revealed by a neighbor-joining tree. Variation partitioning showed that environment explained much larger portions of genetic variation than geography between non-introgressed lineages (i.e., between R. oldhamii and other lineages). However, the Mantel and partial Mantel tests and the multiple matrix regression with randomization found that isolation-by-distance played a more important role than isolation-by-environment (IBE) in contributing to genetic variation in most between lineage comparisons. Nevertheless, strong IBE was found when compared between non-introgressed lineages of R. oldhamii and R. rubropilosum, suggesting post-speciation ecological divergence. Several environmental variables, including annual mean temperature, aspect, isothermality, seasonal precipitation, slope, and soil pH, could be important ecological drivers involved in reproductive isolation between R. oldhamii and non-R. oldhamii species within the Tsutsusi subgenus.     

<Emphasis Type="Italic">Phialemoniopsis endophytica</Emphasis> sp. nov., a new species of endophytic fungi from <Emphasis Type="Italic">Luffa cylindrica</Emphasis> in Henan,China

During a survey of endophytic fungi in the cucurbit plants collected from Henan, China, a new species, Phialemoniopsis endophytica was isolated from the lower stem of Luffa cylindrica. It differs from other Phialemoniopsis species by its cylindrical to flask-shaped phialides, falcate conidia with blunt ends, ostiolate pycnidium-like conidiomata without marginal setae and ellipsoidal chlamydospores. Multi-locus (ITS, LSU, ACT, and TUB) phylogenetic analysis confirmed that P. endophytica is distinct from other species. A synopsis of the morphological characters of the new species is provided.     

Interseasonal and interspecies diversities of <Emphasis Type="Italic">Symbiodinium</Emphasis> density and effective photochemical efficiency in five dominant reef coral species from Luhuitou fringing reef,northern South China Sea

Although it is well established that different coral species have different susceptibilities to thermal stress, the reasons behind this variation are still unclear. In this study, 384 samples across five dominant coral species were collected seasonally between September 2013 and August 2014 at Luhuitou fringing reef in Sanya, Hainan Island, northern South China Sea, and their algal symbiont density and effective photochemical efficiency (Φ _PSII) were measured. The results indicated that both the Symbiodinium density and Φ _PSII of corals were subject to significant interspecies and seasonal variations. Stress-tolerant coral species, including massive Porites lutea and plating Pavona decussata, had higher symbiont densities but lower Φ _PSII compared to the vulnerable branching species of Acropora over the course of all four seasons. Seasonally, coral symbiont densities were the lowest during winter, while during the same period, Φ _PSII of corals was at the highest point. Further analysis suggested that dissolved inorganic nutrients and upwelling in the reef area were probably responsible for the observed seasonal variations in symbiont density. The fact that Porites lutea has the lowest Φ _PSII during all four seasons is likely related to their symbionts’ lower capacity to provide required photosynthates for calcification. These results suggest that a coral’s thermal tolerance is primarily and positively dependent on its symbiont density and is less related to its effective photochemical efficiency.     

<Emphasis Type="Italic">Metarhizium bibionidarum</Emphasis> and <Emphasis Type="Italic">M. purpureogenum</Emphasis>: new species from Japan

Two new species of Metarhizium, M. bibionidarum and M. purpureogenum are described from Japan. Metarhizium bibionidarum is the phylogenetic sister species of M. pemphigi and a member of the M. flavoviride species complex. It is distinguished morphologically from M. pemphigi by its larger conidia. The species is based on a collection of an infected March fly larva (Diptera: Bibionidae) but is also known to occur on fruit beetle (Coleoptera: Scarabaeidae) encountered in France. Metarhizium purpureogenum was isolated from soil by plating and insect baiting methods and represents a unique phylogenetic lineage placed outside the M. anisopliae and M. flavoviride species complexes. Three isolates of M. purpureogenum excreted a distinctive red-purple pigment into agar medium when co-cultured with M. robertsii or Aspergillus oryzae.