Allometric biomass,nutrient and carbon stock models for <Emphasis Type="Italic">Kandelia candel</Emphasis> of the Sundarbans,Bangladesh

Key message

Present study recommends DBH as independent variable of the derived allometric models and Biomass = a + b DBH ² has been selected for total above-ground biomass, nutrients and carbon stock.

Abstract

Kandelia candel (L.) Druce is a shrub to small tree of the Sundarbans mangrove forest of Bangladesh. The aim of the study was to derive the allometric models for estimating above-ground biomass, nutrient and carbon stock in K. candel. A total of eight linear models with 64 regression equations were tested to derive the allometric models for biomass of each part of plant; and nutrients and carbon stock in total above-ground biomass. The best fitted allometric models were selected by considering the values of R ², CV, R _mse, MS_error, S _a, S _b, F value, AICc and Furnival Index. The selected allometric models were Biomass = 0.014 DBH² + 0.03; √Biomass = 0.29 DBH ? 0.21; √Biomass = 0.66 √DBH ? 0.57; √Biomass = 1.19 √DBH ? 1.02; Biomass = 0.21 DBH² + 0.12 for leaves, branches, bark, stem without bark and total above-ground biomass, respectively. The selected allometric models for Nitrogen, Phosphorous, Potassium and Carbon stock in total above-ground biomass were N = 0.39 DBH² + 0.49, P = 0.77 DBH² + 0.14, K = 0.87 DBH² + 0.07 and C = 0.09 DBH² + 0.05, respectively. The derived allometric models have included DBH as a single independent variable, which may give quick and accurate estimation of the above-ground biomass, nutrient and carbon stock in this species. This information may also contribute to a broader study of nutrient cycling, nutrient budgeting and carbon sequestration of the studied forest.

     

In vitro inhibition of mumps virus by retinoids

Background

Foot-and-mouth disease virus (FMDV) initiates infection via recognition of one of at least four cell-surface integrin molecules α_vβ₁, α_vβ₃, α_vβ₆, or α_vβ₈ by a highly conserved Arg-Gly-Asp (RGD) amino acid sequence motif located in the G-H loop of VP1. Within the animal host, the α_vβ₆ interaction is believed to be the most relevant. Sub-neutralizing levels of soluble secreted α_vβ₆ (ssα_vβ₆) was used as a selective pressure during passages in vitro to explore the plasticity of that interaction.

Results

Genetically stable soluble integrin resistant (SIR) FMDV mutants derived from A24 Cruzeiro were selected after just 3 passages in cell culture in the presence of sub-neutralizing levels of ssα_vβ₆. SIR mutants were characterized by: replication on selective cell lines, plaque morphology, relative sensitivity to ssα_vβ₆ neutralization, relative ability to utilize α_vβ₆ for infection, as well as sequence and structural changes. All SIR mutants maintained an affinity for α_vβ₆. Some developed the ability to attach to cells expressing heparan sulfate (HS) proteoglycan, while others appear to have developed affinity for a still unknown third receptor. Two classes of SIR mutants were selected that were highly or moderately resistant to neutralization by ssα_vβ₆. Highly resistant mutants displayed a G145D substitution (RGD to RDD), while moderately resistant viruses exhibited a L150P/R substitution at the conserved RGD + 4 position. VP1 G-H loop homology models for the A-type SIR mutants illustrated potential structural changes within the integrin-binding motif by these 2 groups of mutations. Treatment of O1 Campos with ssα_vβ₆ resulted in 3 SIR mutants with a positively charged VP3 mutation allowing for HS binding.

Conclusions

These findings illustrate how FMDV particles rapidly gain resistance to soluble receptor prophylactic measures in vitro. Two different serotypes developed distinct capsid mutations to circumvent the presence of sub-neutralizing levels of the soluble cognate receptor, all of which resulted in a modified receptor tropism that expanded the cell types susceptible to FMDV. The identification of some of these adaptive mutations in known FMDV isolates suggests these findings have implications beyond the cell culture system explored in these studies.     

Meta-analysis of the interaction between shade-tolerance,light environment and growth response of woody species to elevated CO2

Growth responses of different tree species to elevated CO₂ vary enormously, even when grown under the same basic experimental conditions (such as nutrient supply and light conditions). A test of the hypothesis that this variation is associated with the species’ shade-tolerance is presented. A meta-analysis of 74 logarithm-transformed response ratios RR (total biomass in ∼700 μmol·mol^–1 CO₂/biomass in current ambient CO₂), grouped according to the species’ relative tolerance to shade, revealed that RR differed widely and significantly between seedlings or saplings of woody species of different shade-tolerance. Only comparative studies were included in the meta-analysis, and interference from differences in basic experimental conditions between experiments was minimised. The mean RR of species with very high shade-tolerance was 1.51. This was significantly greater than the value of 1.18 for species intolerant of shade. Smaller differences in mean RR were found between groups of species that differed less widely in shade-tolerance. When responses were categorised according to two aspects of light environment in the experiments, daily integrated or peak photosynthetically active photon flux density (PFD), the differences in RR between different shade-tolerance classes disappeared at daily integrated PFD below ∼20 mol·m^–2·d^–1 or peak PFD below ∼250 μmol·m^–2·s^–1. Growth stimulation in juvenile trees is likely to cause increased survivorship in subsequent years. Even if the observed differences in RR were restricted to sites experiencing no or only moderate shading, it appears likely that they will affect species composition of naturally regenerating forests in the long term.     

菊花近缘种属植物幼苗耐阴特性分析及其评价指标的确定

以龙脑菊、菊花脑、野菊等15个菊花近缘种属植物幼苗为材料,对其进行不同梯度遮荫处理(全光照,遮光率60%,遮光率78%,遮光率95%),从形态和生理等方面的22个指标进行测定,以各项指标的耐阴系数作为衡量耐阴性的指标,利用主成分分析、回归分析和聚类分析法对其耐阴性进行综合评价。结果表明:遮光率78%时的植物茎粗(X2)、叶片厚度(X10)、叶绿素含量(X16),遮光率60%时的植物叶绿素含量(X15),以及遮光率95%时的植物叶面积(X13)、相对含水量(X14)和胞间二氧化碳浓度(X21)8个指标可作为菊花近缘种属植物耐阴性评价指标,建立菊花近缘种属植物耐阴性评价的数学模型:Y=82.876-0.153X2+0.094X10+0.741X13+0.084X14+0.054X15-0.087X16-0.472X2,(R2=0.998),预测精度大于0.97。13份材料的耐阴性极强,矶菊的耐阴性较差,即多数菊花近缘种属植物具有较好的耐阴能力。     

Scaling behaviors of weighted food webs as energy transportation networks

Food webs can be regarded as energy transporting networks in which the weight of each edge denotes the energy flux between two species. By investigating 21 empirical weighted food webs as energy flow networks, we found several ubiquitous scaling behaviors. Two random variables A_i and C_i defined for each vertex i, representing the total flux (also called vertex intensity) and total indirect effect or energy store of i, were found to follow power law distributions with the exponents α≈1.32 and β≈1.33, respectively. Another scaling behavior is the power law relationship, , where η≈1.02. This is known as the allometric scaling power law relationship because A_i can be treated as metabolism and C_i as the body mass of the sub-network rooted from the vertex i, according to the algorithm presented in this paper. Finally, a simple relationship among these power law exponents, η=(α−1)/(β−1), was mathematically derived and tested by the empirical food webs.     

Heparin Modulates Integrin-Mediated Cellular Adhesion: Specificity of Interactions with α and β Integrin Subunits

Heparin is known to influence the growth, proliferation, and migration of vascular cells, but the precise mechanisms are unknown. We previously demonstrated that unfractionated heparin (UH) binds to the platelet integrin α_IIbβ₃, and enhances ligand binding. To help define the specificity and site(s) of heparin-integrin interactions, we employed the erythroleukemic K562 cell line, transfected to express specific integrins (α_vβ₃, α_vβ₅, and α_IIbβ₃). By comparing K562 cells expressing a common α subunit (Kα_vβ₃, Kα_vβ₅) with cells expressing a common β subunit (Kα_vβ₃, Kα_IIbβ₃), we observed that heparin differentially modulated integrin-mediated adhesion to vitronectin. UH at 0.5–7.5 μg/ml consistently enhanced the adhesion of β₃expressing cells (Kα_vβ₃,Kα_IIbβ₃). In contrast, UH at 0.5–7.5 μg/ml inhibited Kα_vβ₅adhesion. Experiments using integrin-blocking antibodies, appropriate control ligands, and nontransfected native K562 cells revealed that heparin's actions were mediated by the specific integrins under study. Preincubation of heparin with Kα_vβ₃cells enhanced adhesion, while preincubation of heparin with the adhesive substrate (vitronectin) had minimal effect. There was a structural specificity to heparin's effect, in that a low molecular weight heparin and chondroitin sulfate showed significantly less enhancement of adhesion. These findings suggest that heparin's modulation of integrin-ligand interactions occurs through its action on the integrin. The inhibitory or stimulatory effects of heparin depend on the β subunit type, and the potency is dictated by structural characteristics of the glycosaminoglycan.     

Role of the DELSEED Loop in Torque Transmission of F1-ATPase

F₁-ATPase is an ATP-driven rotary motor that generates torque at the interface between the catalytic β-subunits and the rotor γ-subunit. The β-subunit inwardly rotates the C-terminal domain upon nucleotide binding/dissociation; hence, the region of the C-terminal domain that is in direct contact with γ—termed the DELSEED loop—is thought to play a critical role in torque transmission. We substituted all the DELSEED loop residues with alanine to diminish specific DELSEED loop-γ interactions and with glycine to disrupt the loop structure. All the mutants rotated unidirectionally with kinetic parameters comparable to those of the wild-type F₁, suggesting that the specific interactions between DELSEED loop and γ is not involved in cooperative interplays between the catalytic β-subunits. Glycine substitution mutants generated half the torque of the wild-type F₁, whereas the alanine mutant generated comparable torque. Fluctuation analyses of the glycine/alanine mutants revealed that the γ-subunit was less tightly held in the α₃β₃-stator ring of the glycine mutant than in the wild-type F₁ and the alanine mutant. Molecular dynamics simulation showed that the DELSEED loop was disordered by the glycine substitution, whereas it formed an α-helix in the alanine mutant. Our results emphasize the importance of loop rigidity for efficient torque transmissions.     

Paradoxical facilitation of exocytosis by inhibition of L-type calcium channels of bovine chromaffin cells

Ca²⁺ entry through the L-subtype (α_1D, Ca_v1,3) of voltage-dependent calcium channels (VDCCs) seems to selectively regulate the endocytotic response after the application of a single depolarizing pulse to voltage-clamped bovine chromaffin cells. Here we have found that L channel blockade with nifedipine transformed the exocytotic responses elicited by a double-pulse protocol, from depression to facilitation. This apparent paradoxical effect was mimicked by pharmacological interventions that directly block endocytosis namely, dynasore, calmidazolium, GTP-γS and GDP-βS. This reinforces our view that Ca²⁺ entry through PQ channels (α_1A; Ca_v2.1) regulates fast exocytosis while Ca²⁺ entry through L channels preferentially controls rapid endocytosis.     

Identification of purinoceptors in the isolated stomach and intestine of the three-spined stickleback Gasterosteus aculeatus L.

1. Adenine nucleosides and nucleotides were examined for pharmacological activity in isolated stomach and intestine from the stickleback Gasterosteus aculeatus L.2. Adenosine and its stable analogues all concentration-dependently relaxed carbachol-contracted stomach and intestine, with no significant difference in the potency of the analogues. Only 8-(p-sulphophenyl) theophylline inhibited the relaxant response to adenosine in both tissues; other adenosine antagonists such as 1,3-dipropyl-8-cyclopentylxanthine were not active.3. ATP, α, β-methylene ATP (α,β-MeATP) and 2-methylthio ATP (2-MeSATP) all caused concen- tration-dependent contractions of the stomach and intestine.4. In the stomach, the order of potency was 2-MeSATP >α, β-MeATP = ATP; the P_2γ-purinoceptor antagonist reactive blue 2 inhibited responses to ATP.5. In the intestine, the order of potency was α,β-MeATP > 2-MeSATP = ATP; reactive blue 2 did not affect responses to ATP, nor did prolonged incubation with α,β-MeATP.6. It is concluded that in both the stomach and intestine, adenosine is acting through a non-specific or undifferentiated P₁-purinoceptor. In the stomach, however, the P₂-purinoceptor appears to be analogous to the mammalian P_2γ-purinoceptor, and in the intestine, the receptor is more similar to the mammalian P_2x-subtype, although it was not susceptible to desensitization.     

Photoconversion kinetics of chloroplast Photosystems I and II. Effect of Mg2+

The effect of divalent cations on the primary photoconversion kinetics of chloroplast Photosystems (PS) I and II was investigated by absorbance difference spectrophotometry in the ultraviolet (ΔA₃₂₀) and red (ΔA₇₀₀) regions and by fluorescence at room temperature. Three main chlorophyll (Chl) a fluorescence emission components were identified. Addition of 5 mM MgCl₂ to unstacked chloroplasts caused a 5–7-fold increase in F_vα, the variable fluorescence yield controlled by the α-centers. The fluorescence yield F_vβ controlled by the β-centers and the nonvariable fluorescence yield F₀ were only slightly changed by the treatment. The absolute number of α- and β-centers remained unchanged and independent of divalent cations. The rate constants K_α, K_β and K_P-700 determined from the photoconversion kinetics of Q_α, Q_β and P-700 were also unchanged by divalent cations, suggesting a constancy of the respective absorption cross-sections. Evidence is presented that the Mg²⁺ effect on Chl a fluorescence is not due simply to unstacking. Conclusion: (1) In the absence of divalent cations from the chloroplast suspending medium, the variable fluorescence yield is not complementary to the rate of PS II photochemistry. (2) A spillover of excitation from PS II to PS I in the absence of Mg²⁺ cannot account for the 7-fold lowering of the variable fluorescence yield F_vα at room temperature. The results are discussed in view of a model of excitation transfer and fluorescence emission in the pigment bed of PS II_α and PS II_β.     

Insights into binding modes of tumstatin peptide T7 with the active site of αvβ3 integrin

Through interaction with the active site of α_vβ₃ integrin, tumstatin T7 peptide inhibits both the angiogenesis and the proliferation of tumour cells. In this work, docking in conjunction with molecular dynamics simulation was used to explore the binding mode of T7 peptide and α_vβ₃ integrin. The binding mode analysis revealed that the residues Ser⁹⁰, Arg⁹¹, Asp⁹³ and Tyr⁹⁴ in T7 peptide, and (α)-Asp¹⁵⁰, (β)-Arg²¹⁴, (α)-Asp¹⁴⁸ (α)-Gln²¹⁴ and (α)-Glu¹²³ in the active site of α_vβ₃ integrin were most likely the key interaction sites. The hydroxyl of Tyr⁹⁴ coordinates α_vβ₃ via a Mn²⁺ ion, revealing that Mn²⁺ is also an important factor for the interaction. The insight into these key interaction sites not only suggests that the active site of α_vβ₃ integrin can bind to molecules through multiple binding mechanisms, but also provides some useful information for structure-based drug design.     

Classification of DNA polymerase activities from ovaries of the frog,Xenopus laevis

Four distinct DNA polymerase activities were isolated from ovaries of the frog Xenopus laevis. Specific assays for each activity were established. The isolated activities were characterized by molecular weight, template-primer preferences, and sensitivity to specific inhibitors as Xenopus laevis ovarian DNA polymerases-α₁, -α₂, -β, and -γ. All previously described Xenopus laevis DNA polymerases were classified using these properties.     

Fuzzy binding model of molecular interactions between tropoelastin and integrin alphaVbeta3

Tropoelastin is the highly flexible monomer subunit of elastin, required for the resilience of the extracellular matrix in elastic tissues. To elicit biological signaling, multiple sites on tropoelastin bind to cell surface integrins in a poorly understood multifactorial process. We constructed a full atomistic molecular model of the interactions between tropoelastin and integrin α_vβ₃ using ensemble-based computational methodologies. Conformational changes of integrin α_vβ₃ associated with outside-in signaling were more frequently facilitated in an ensemble in which tropoelastin bound the integrin’s α1 helix rather than the upstream canonical binding site. Our findings support a model of fuzzy binding, whereby many tropoelastin conformations and defined sites cooperatively interact with multiple α_vβ₃ regions. This model explains prior experimental binding to distinct tropoelastin regions, domains 17 and 36, and points to the cooperative participation of domain 20. Our study highlights the utility of ensemble-based approaches in helping to understand the interactive mechanisms of functionally significant flexible proteins.     

Polyoxygenated ent-kauranes and water-soluble conjugates in seed of Phaseolus coccineus

C-α and C-β, previously isolated from seed of Phaseolus coccineus, are shown respectively to be the bis-O-isopropylidene and the 16,17-mono-O-isopropylidene derivatives of ent-6α,7α,16β,17-tetrahydroxykauranoic acid. By GC-MS characterization of the products of acidic, basic and enzymatic hydrolysis, water soluble conjugates of the following compounds have been shown to occur in P. coccineus seed: GA₈, GA₁₇, GA₂₀, GA₂₈, ent-6α,7α,13-trihydroxykaurenoic acid, ent-6α,7α,17-trihydroxy-16β-kauranoic acid, ent-6α,7α,16β,17-tetrahydroxykauranoic acid, 7β,13-dihydroxykaurenolide and abscisic acid.     

Stochastic processes in particle-number fluctuations in an electron-photon shower

The paper is concerned with the existence and asymptotic character of the nonlinear boundary value problemdG/dt=F(t,G,F, ¦α?β¦) (1) ¦α?β¦dF/dt=g(t,G,F, ¦α?β¦)G(o,¦α?β¦)=k ₁,G(∞,¦α?β¦)=k ₂ (2) as ¦α?β¦→ o+ The discussion is related to the problem of particle-number fluctuations in the theory of cosmic radiation andG andF denote respectively the probability generating functions for the electron distribution in an electron-initiated and a photon-initiated shower. A solution of the system (1) satisfying the boundary conditions (2) is constructed so that specified limiting conditions are fulfilled.     

Polyhydroxylated steroid compounds from the Far Eastern starfish <Emphasis Type="Italic">Distolasterias nipon</Emphasis>

Two new steroid glycosides: distolasteroside D₆, (24S)-24-O-(β-D-xylopyranosyl)-5α-cholestane-3β,6α,8,15β,16β,24-hexaol, and distolasteroside D₇, (22E,24R)-24-O-(β-D-xylopyranosyl)-5α-cholest-22-ene-3β,6α,8,15β,24-pentaol were isolated along with the previously known distolasterosides D₁, D₂, and D₃, echinasteroside C, and (25S)-5α-cholestane-3β4β,6α,7α,8,15α,16β,26-octaol from the Far Eastern starfish Distolasterias nipon. The structures of new compounds were elucidated by NMR spectroscopy and MALDI TOF mass spectrometry. Like neurotrophins, distolasterosides D₁, D₂, and D₃ were shown to induce neuroblast differentiation in a mouse neuroblastoma C1300 cell culture.     

Differential regulation of Na(v)beta subunits during myogenesis

Voltage-gated sodium channels (Na_v) consist of a pore-forming α subunit (Na_vα) associated with β regulatory subunits (Na_vβ). Adult skeletal myocytes primarily express Na_v1.4 channels. We found, however, using neonatal L6E9 myocytes, that myofibers acquire a Na_v1.5-cardiac-like phenotype efficiently. Differentiated myotubes elicited faster Na_v1.5 currents than those recorded from myoblasts. Unlike myoblasts, I_Na recorded in myotubes exhibited an accumulation of inactivation after the application of trains of pulses, due to a slower recovery from inactivation. Since Na_vβ subunits modulate channel gating and pharmacology, the goal of the present work was to study Na_vβ subunits during myogenesis. All four Na_vβ (Na_vβ1-4) isoforms were present in L6E9 myocytes. While Na_vβ1-3 subunits were up-regulated by myogenesis, Na_vβ4 subunits were not. These results show that Na_vβ genes are strongly regulated during muscle differentiation and further support a physiological role for voltage-gated Na⁺ channels during development and myotube formation.     

Potency optimization of Huwentoxin-IV on hNav1.7: A neurotoxin TTX-S sodium-channel antagonist from the venom of the Chinese bird-eating spider Selenocosmia huwena

The spider venom peptide Huwentoxin-IV (HwTx-IV) 1 is a potent antagonist of hNa_v1.7 (IC₅₀ determined herein as 17 ± 2 nM). Na_v1.7 is a voltage-gated sodium channel involved in the generation and conduction of neuropathic and nociceptive pain signals. We prepared a number of HwTx-IV analogs as part of a structure–function study into Na_v1.7 antagonism. The inhibitory potency of these analogs was determined by automated electrophysiology and is reported herein. In particular, the native residues Glu¹, Glu⁴, Phe⁶ and Tyr³³ were revealed as important activity modulators and several peptides bearing mutations in these positions showed significantly increased potency on hNa_v1.7 while maintaining the original selectivity profile of the wild-type peptide 1 on hNa_v1.5. Peptide 47 (Gly¹, Gly⁴, Trp³³-HwTx) demonstrated the largest potency increase on hNa_v1.7 (IC₅₀ 0.4 ± 0.1 nM).