Occurrence of Phialophora radicicola var. graminicola and Gaeumannomyces graminis var. tritici on roots of wheat in field crops

Assessments of Phialophora radicicola var. graminicola (PRG) and Gaeumannomyces graminis var. tritici (GGT) were made by culturing and by direct microscopic examination of pieces of seminal roots from 16 winter wheat crops grown in different cropping sequences and with different phosphate manuring. PRG occurred on all wheat crops, but was abundant only on wheat after grass, where it seemed to delay the onset of damaging take-all by 1 yr. Delayed occurrence of take-all by phosphate fertiliser was not related to differences in populations of PRG. Wheat grown in ‘take-all decline’ soils had only small amounts of PRG, indicating that the development and the decline of take-all epidemics may be influenced by different biological control mechanisms; breaking sequences of wheat crops by 1 yr grass leys might harness the advantages of both mechanisms.     

Susceptibility to take‐all of cereal and grass species,and their effects on pathogen inoculum

Two field trials were conducted to investigate different herbage grasses and cereals for their susceptibility to the disease take‐all, for their impact on concentrations of the pathogen, Gaeumannomyces graminis var. tritici (Ggt), in soil and for their effect on development of take‐all in a subsequent wheat crop. In the herbage grass trial, Bromus willdenowii was highly susceptible to Ggt, produced the greatest post‐senescence Ggt concentrations in soil and highest incidence of take‐all in following wheat crop. Lolium perenne, Lolium multiflorum and Festuca arundinacea supported low Ggt soil concentrations and fallow the least. The relationship between susceptibility to Ggt and post‐senescence concentrations in soil differed between pasture grasses and cereals. In a trial in which Ggt was added to half the plots and where wheat, barley, triticale, rye or fallow were compared, the susceptibility of the cereals to take‐all was not clearly linked to post‐harvest soil Ggt concentrations. In particular, triticale and rye had low and negligible take‐all infection respectively, but greater post‐harvest soil Ggt concentrations than barley or wheat. This indicates that low Ggt concentrations on roots may build up during crop senescence on some cereals. Soil Ggt concentrations were greater following harvest in inoculated plots sown to cereals, but in the second year there was more take‐all in the previously non‐inoculated than inoculated plots. Thus, the grass and cereal species differed in susceptibility to take‐all, in their impact on Ggt multiplication and in associated take‐all severity in following wheat crop.     

Soil-applied fungicides for controlling take-all in field experiments with winter wheat

Soil treatment fungicides were tested against take-all (Gaeumannomyces graminis var. tritici) in three field experiments with winter wheat. Fungicides were applied as drenches either before sowing in autumn, and incorporated by rotary harrowing, or to the crop in spring. The most effective treatments were autumn applied benomyl (20 kg/ha) and nuarimol (0·55-4·4 kg/ha). However, the highest nuarimol concentration depressed yield. Benomyl sometimes induced a resurgence of take-all in the second wheat crop after treatment. Nuarimol had no adverse effects in subsequent crops, and neither fungicide hindered the onset of take-all decline in a third crop after treatment. The possible value of soil treatment in future control strategies is discussed.     

Fungal communities and health status of roots of winter wheat cultivated after oats and oats mixed with other crops

Health status of winter wheat roots and thecomposition of wheat root fungi were studiedover 1996-1999 following the cultivation ofoats in a pure stand and mixed with otherplants as forecrops. The infection of wheatroots by >Gaeumannomyces graminis wasobserved to be largely dependent on the kind offorecrop; the best being oats in a pure stand,and then oats with pea or lupin mixtures. Inthe emergence and shooting phases, saprophyticfungi were dominant, while in the stage of harddough stage mainly pathogenic fungi, especially>G. graminis were common. The pathogenicfungi were mostly represented by >G.graminis and >Fusarium spp., while >Rhizoctonia spp. were much less frequent.The composition of the fungal communitydepended considerably on the forecrop anddevelopment phase of the plant. The kind offorecrop significantly affected the frequencyof infection by >G. graminis. The highestnumber of isolates was obtained from wheat rootsof crops grown after a mixture of oats andbarley.     

Reduction of Take-all Inoculum by Rotation with Lupins, Oats or Field Peas

The feasibility of use of lupins, oats and field peas as alternative rotation crops to reduce inoculum of the take-all fungus (Gaeumannomyces graminis var. tritici) (under Western Australian field conditions) and disease in following wheat was investigated with a one year field trial, the soil from which was used in two succeeding pot experiments. The possible mechanisms of reduction of inoculum and disease by these crops were examined testing the soil for pathogen and disease suppression. Rotation with lupins or oats for two seasons reduced (P <0.05) inoculum of the take-all fungus and lupins, oats or field peas reduced (P <0.05) disease in following wheat. Lupins alone reduced inoculum and disease, (P <0.1) after one season. No apparent suppression of the pathogen in the absence of host plants was recorded after one season of rotation, but after two seasons, lupins, oats or field peas all suppressed (P <0.02) growth of the pathogen within soil. However only field pea soil suppressed take-all in comparison with the wheat control. Although after two seasons all rotation crops were effective in reducing inoculum and disease the mechanisms of reduction appear to differ between the rotation crops used in this study.     

Take-all and grain yields in sequences of winter wheat crops testing fluquinconazole seed treatment applied in different combinations of years

A seed treatment containing fluquinconazole as the only active ingredient was tested in sequences of up to six consecutive crops of winter wheat. It was applied or not applied in each year, and was tested in all possible combinations with treatments applied in previous years. Take‐all was controlled effectively, and grain yield usually increased, when the disease intensity was moderate or severe in non‐treated crops, but control of the most severe take‐all did not result in acceptable yields or grain quality. Treatment of a first wheat or second wheat with little take‐all did not usually benefit the subsequent crop. Non‐treatment of a crop grown after a treated, diseased crop usually resulted in a marked increase in disease, indicating that treatment had delayed progress of the epidemic. Take‐all was controlled by treatment of a crop grown after a treated, diseased crop but the amount of control and of increased yield was often less than that in a treated crop grown after a non‐treated crop in the same crop sequence. Similar effects of seed treatment were apparent in crops grown on a site with take‐all decline. The alternative fungicide, silthiofam, applied as a seed treatment in the later years of some experiments, was usually as effective as fluquinconazole. From these experiments, it is recommended that: a) fluquinconazole seed treatment should be applied to a second or third wheat crop, grown after a first wheat crop that was managed to avoid rapid take‐all development (e.g. by avoiding very early sowing); b) a break crop should follow the treated crop; c) the seed treatment should not normally be used in longer sequences of wheat or on take‐all decline soil unless it is planned to follow the treated crop with a non‐cereal break.     

Effect of temperature on growth of some avirulent fungi and cross-protection against the wheat take-all fungus

The linear growth rates of Gaeumannomyces graminis var. graminis, G. graminis var. tritici, Phialophora radicicola var. graminicola and a lobed hyphopodiate Phialophora sp. were studied on agar at various temperatures between 5 and 30 °C and on wheat roots at two temperature regimes (12 h at 7°/12 h at 13 °C and 12 h at 17°/12 h at 23 °C). On agar at 30 °C, the isolates of G. graminis graminis grew faster than those of G. graminis tritici and Phialophora sp. but three isolates of G. g. graminis grew more slowly than the other two fungi at 5 and 10 °C. Two other isolates of G. g. graminis were cold-tolerant and had growth rates comparable to those of G. g. tritici and Phialophora sp. at 10 °C. The growth rates of Australian isolates of P. radicicola graminicolu were similar to that of a British isolate and were about a third to a half those of the other three fungi at most temperatures. The growth rates of the fungi on wheat roots at the low and high temperature regimes were correlated with the growth rates on agar at 10 and 20 °C respectively. The correlation was better at low temperatures r= 0.81) than at high temperatures (r = 0.62). Cross-protection experiments using two G. g. graminis isolates which grow poorly at temperatures below 15 °C and a cold-tolerant isolate each of G. g. graminis and Phialophora sp. showed that, while all four fungi protected wheat against take-all at high temperatures (17/23 °C) as evidenced by less severe disease and significantly greater dry weights, only the cold-tolerant fungi were effective at low temperatures (7/13 °C). The use of cold-tolerant isolates of avirulent fungi in field experiments may result in better protection in the early stages of wheat growth when Australian soil temperatures are mostly below 15 °C.     

Studies on the spread of Gaeumannomyces graminis var. tritici in wheat.

The effect of cultivations on the spread of Gaeumannomyces graminis var. tritici from a line source of inoculum, consisting of naturally infected stubble and roots, was recorded in the field over 2 yr. With the aid of cultivations, spread in the first wheat crop occurred frequently to a distance of 0·9 m and occasionally to a distance of 2·5 m. However, the following wheat crop was uniformly infected, probably as a result of a rapid build-up of background inoculum in the first wheat, so that any spread by cultivations was masked.     

Effects of sowing date and volunteers on the infectivity of soil infested with Gaeumannomyces graminis var. tritici and on take-all disease in successive crops of winter wheat

In a field experiment on winter wheat, take‐all on plants and the infectivity of the soil were studied in crop sequences with different combinations of sowing dates. Take‐all was negligible in the first wheat crop, but thereafter the mean disease intensity (measured using a take‐all rating, TAR, with a maximum of 300) was 108, 190, 118 and 251 in the second to fifth successive crops. In each growing season, the disease differed amongst sequences and built up more rapidly and was more intense on plants sown in mid‐September than on plants sown in mid‐October. In late‐sown plots, where volunteers had been present during the mid‐September to mid‐October period, take‐all reached an intensity intermediate between that in early‐sown plots and that in late‐sown plots that had been kept free of volunteers. Volunteers, therefore, partially offset the expected beneficial effect of decreased disease with later sowing. Differences in take‐all amongst sequences were most pronounced in the second wheat crop and early sowing of the previous wheat increased intensity of disease. In the following (third) crop, differences in disease intensity amongst sequences were smaller. Soil infectivity (measured by seedling bioassay after harvest) built up progressively from a low level after the first crop to peak after the third crop. In this build‐up phase, soil infectivity estimates were always numerically greater after harvest of early‐sown treatments than after later‐sown treatments, although never significant at P= 0.05. The greatest difference (P= 0.06) was recorded in October before sowing of the third crop, where the comparison was between soil after two previous early sowings and soil after two previous later sowings and control of volunteers. In the same autumn, presence of green cover (i.e. volunteers) was associated with a smaller loss of soil infectivity between harvest and later sowing than occurred in an absence of green cover. In 2^nd–4^th crops, where comparisons were available and mean TARs indicated moderate levels of take‐all, sowing later had no yield benefit, despite more take‐all and greater soil infectivity associated with early sowing. Important considerations for the management of crops at risk of take‐all are 1) choosing appropriate sowing dates to minimize take‐all or to encourage take‐all decline and 2) controlling volunteers and weed hosts where crops are sown late to minimise take‐all.     

Control of survival of Ophiobolus graminis between consecutive crops of winter wheat

Under a glasshouse crop of red clover, Ophiobolus graminis (Sacc.) Sacc. in artificially colonized straws survived for longer on the soil surface than when buried, and for much longer when suspended above the soil; survival in buried straws was somewhat more prolonged in fallow soil than under clover. In field experiments with consecutive crops of winter wheat, under-sowing with red clover was not effective in reducing the incidence of take-all, possibly because of above-ground survival of the pathogen in unploughed straw. Early rotavation, however, significantly reduced disease incidence, probably because of enhanced microbial activity and competition for nitrogen in the well-aerated compost of soil and stubble.     

Comparison of natural and artificial epidemics of take-all in sequences of winter wheat crops

Winter wheat was grown for six successive years (Expt 1) and for three successive years (Expt 2) in field experiments on different soil types. Artificial inoculum of the take-all fungus (Gaeumannomyces graminis var. tritici cultured on autoclaved oat grains) was incorporated in the soil of some of the plots just before, or at, sowing of the first winter wheat crop. Expt 1 tested the incorporation of similar amounts of inoculum (212 kg ha^-1) at different depths. Expt 2 tested different amounts of inoculum at the same, shallow depth. Early sowing (September), late sowing (October) and spring inoculation were additional treatments, applied to the first crop only, in Expt 2. Seasonal factors apart, the disease outcome in the first year after inoculation depended on amounts and placement of applied inoculum, as well as date of sowing. Deeper inoculum resulted in less disease (Expt 1). Severe take-all was produced in Expt 2 by incorporating inoculum shallowly in sufficient quantities (400 kg ha^-1 or more). Less inoculum (200 kg ha^-1) generated less disease, especially in earlier-sown plots. Differences in disease amongst inoculum treatments were greatest in the first year and diminished subsequently, particularly where sowing had been early in the first year. In Expt 1, where first crops exposed to artificial inoculum developed moderate-to-severe disease, disease in subsequent second and/or third crops was less. In the fourth crop a second peak of disease occurred, coinciding with a first peak in sequences without added inoculum. Take-all decline (TAD) appeared to be expressed in all sequences thereafter. In Expt 2 in sequences without added inoculum, TAD occurred after a peak of disease in the second crop. Where 400 kg ha^-1 or more of inoculum were added, disease was severe in the first year and decreased progressively in successive years. Disease was less patchy in plots that received artificial inoculum. However, it remains uncertain mat severe disease caused by artificial inoculation achieved an early onset of true TAD. The infectivity of the top 12 cm of soil in the first 3 yr of Expt 1, determined by bioassay, depended on the depth of added inoculum and amount of disease in subsequent crops. However, at the time of the naturally occurring peak of disease severity (in either inoculated or non-inoculated plots) it did not predict either disease or TAD. Differences and similarities amongst epidemics developing naturally and those developing from different amounts and placement of applied inoculum have been revealed. The epidemiological implications of adding inoculum and the potential value of artificially-created epidemics of take-all in field trials are discussed.     

Effects of break crops,and of wheat volunteers growing in break crops or in set‐aside or conservation covers,all following crops of winter wheat,on the development of take‐all (Gaeumannomyces graminis var. tritici) in succeeding crops of winter wheat

Experiments on the Rothamsted and Woburn Experimental Farms studied the effects on take‐all of different break crops and of set‐aside/conservation covers that interrupted sequences of winter wheat. There was no evidence for different effects on take‐all of the break crops per se but the presence of volunteers, in crops of oilseed rape, increased the amounts of take‐all in the following wheat. Severity of take‐all was closely related to the numbers of volunteers in the preceding break crops and covers, and was affected by the date of their destruction. Early destruction of set‐aside/conservation covers was usually effective in preventing damaging take‐all in the following wheat except, sometimes, when populations of volunteers were very large. The experiments were not designed to test the effects of sowing dates but different amounts of take‐all in the first wheats after breaks or covers apparently affected the severity of take‐all in the following (second) wheats only where the latter were relatively late sown. In earlier‐sown second wheats, take‐all was consistently severe and unrelated to the severity of the disease in the preceding (first) wheats. Results from two very simple experiments suggested that substituting set‐aside/conservation covers for winter wheat, for 1 year only, did not seriously interfere with the development of take‐all disease or with the development or maintenance of take‐all decline (TAD). With further research, it might be possible for growers wishing to exploit TAD to incorporate set‐aside/conservation covers into their cropping strategies, and especially to avoid the worst effects of the disease on grain yield during the early stages of epidemics.     

RAPD-Based Inter- and Intravarietal Classification of Fungi of the gaeumannomyces-Phialophora Complex

The suitability of randomly amplified polymorphic DNAs (RAPD) for differentiation at the varietal and intravarietal level was tested on several hundred isolates of the gaeumannomyces-Phialophora (G-P) complex from different geographic locations and host plants. Amplification products obtained using two decamer primers allowed differentiation between gaeumannomyces graminis and gaeumannomyces cylindrosporus and between the three varieties of gaeumannomyces graminis, as well as further division at the intravarietal level. Thus, isolates of the causal agent of take-all on cereals, Gaeumannomyces graminis var. tritici were divided into six subgroups by amplification with these two primers. There is some evidence for an association between host preference and RAPD subgroups but further work is needed to confirm this and to determine the importance of these subgroups. This fast and easy method is a useful tool for investigating the occurrence and distribution of this pathogen and for studying changes in the populations of species and subgroups of Gaeumannomyces in cereal cropping systems     

DNA Probe for Identification of the Take-All Fungus, Gaeumannomyces graminis

A 4.3-kilobase mitochondrial DNA fragment was cloned from Gaeumannomyces graminis var. tritici, the causative agent of take-all disease of wheat. Although this DNA fragment hybridized with all three varieties of G. graminis, it showed little homology with DNA from other fungi and thus should be useful for identification of Gaeumannomyces sp. recovered from infected plants.     

Effects of fluquinconazole and silthiofam, applied as seed treatments to single or consecutive crops of wheat, on take-all epidemic development and grain yields

Seed treatments containing fluquinconazole, silthiofam or a standard fungicide mixture with no activity against take‐all were compared in all combinations of sequences in successive second and third winter wheat crops in five field experiments and second to fourth crops in a sixth experiment. Compared with the standard treatment, silthiofam decreased take‐all more effectively than fluquinconazole when crops were sampled at tillering. In samples taken in summer, during grain filling, silthiofam often decreased the incidence of take‐all (percentage of plants with root symptoms) more than fluquinconazole, but fluquinconazole more effectively decreased the incidence of severe take‐all (percentage of plants with more than 75% of their root systems blackened). It is suggested that these differences are a consequence of more effective control of primary infection of roots by silthiofam and of secondary, root‐to‐root, infection by fluquinconazole. Silthiofam usually increased yield more than did fluquinconazole, perhaps as a consequence of better early protection during tiller and/or spikelet formation. Treatment with either of the fungicides affected epidemic development in the treated crop and in crops grown subsequently. In particular, decreased take‐all had the effect of delaying the year‐to‐year epidemic, so that nontreatment of a subsequent crop resulted in an upsurge in disease. Treatment with either take‐all fungicide of a crop grown after a treated crop was relatively effective if the epidemic in the comparable nontreated crop sequence was continuing to increase. It was, however, detrimental if the disease was approaching its peak in the first treated crop, particularly if a treated (fourth wheat) crop was being compared with a similar crop in a nontreated sequence in which take‐all decline had developed. These results provide a basis for recommendations for the use of seed treatment fungicides in sequences of wheat crops.     

Detoxification of Benzoxazolinone Allelochemicals from Wheat by Gaeumannomyces graminis var. tritici, G. graminis var. graminis, G. graminis var. avenae, and Fusarium culmorum

The ability of phytopathogenic fungi to overcome the chemical defense barriers of their host plants is of great importance for fungal pathogenicity. We studied the role of cyclic hydroxamic acids and their related benzoxazolinones in plant interactions with pathogenic fungi. We identified species-dependent differences in the abilities of Gaeumannomyces graminis var. tritici, Gaeumannomyces graminis var. graminis, Gaeumannomyces graminis var. avenae, and Fusarium culmorum to detoxify these allelochemicals of gramineous plants. The G. graminis var. graminis isolate degraded benzoxazolin-2(3H)-one (BOA) and 6-methoxy-benzoxazolin-2(3H)-one (MBOA) more efficiently than did G. graminis var. tritici and G. graminis var. avenae. F. culmorum degraded BOA but not MBOA. N-(2-Hydroxyphenyl)-malonamic acid and N-(2-hydroxy-4-methoxyphenyl)-malonamic acid were the primary G. graminis var. graminis and G. graminis var. tritici metabolites of BOA and MBOA, respectively, as well as of the related cyclic hydroxamic acids. 2-Amino-3H-phenoxazin-3-one was identified as an additional G. graminis var. tritici metabolite of BOA. No metabolite accumulation was detected for G. graminis var. avenae and F. culmorum by high-pressure liquid chromatography. The mycelial growth of the pathogenic fungi was inhibited more by BOA and MBOA than by their related fungal metabolites. The tolerance of Gaeumannomyces spp. for benzoxazolinone compounds is correlated with their detoxification ability. The ability of Gaeumannomyces isolates to cause root rot symptoms in wheat (cultivars Rektor and Astron) parallels their potential to degrade wheat allelochemicals to nontoxic compounds.     

Saprophytic survival of Gaeumannomyces graminis and Phialophora spp. at various temperature-moisture regimes

The saprophytic survival of the pathogen, Gaeumannomyces graminis var. tritici and two isolates each of three avirulent fungi, G. graminis var. graminis, Phialophora graminicola and a lobed-hyphopodiate Phialophora sp. was studied in two soil types under controlled temperature and moisture conditions in the laboratory. In general, the fungi survived longest in the cool, dry soil (15°C, < -10 MPa) followed by the warm dry soil (30°C, < -10 MPa). All the fungi were virtually eliminated from the warm, moist soil (30°C, -0.3 MPa) after 3 months. Survival was intermediate under cool, moist conditions (15°C, -0.3 MPa). Under cool, moist conditions, G. graminis var. graminis survived better than the other three fungi in the first 3 months in both soil types and continued to do so for a further 3 months in one soil. Both isolates of the lobed-hyphopodiate Phialophora sp. survived poorly in the two soil types being almost eliminated after 3 months. There were considerable differences between the survival of the two isolates each of G. graminis var. graminis and P. graminicola, especially under cool, moist conditions. Of the six avirulent isolates studied, one isolate of G. graminis var. graminis (DAR24167) survived best under the three temperature-moisture regimes which showed differences. It also survived better than the take-all fungus under moist, cool conditions and at a comparable rate under dry conditions. Therefore, this variation in survival should be considered when selecting antagonists for the biological control of take-all.     

Disease in wheat genotypes naturally infected with Gaeumannomyces graminis var. tritici

Wheat genotypes consisting of seven homozygous lines and 40 segregate families were studied at two sites naturally infested with the take-all pathogen, Gaeumannomyces graminis var. tritici. The numbers of seminal and coronal roots infected with G. graminis and other root pathogens were recorded. The genotypes differed in infection with G. graminis, with little evidence of genotype × environment interactions. The incidence of G. graminis and Rhizoctonia solani was negatively associated, but the association did not greatly influence differences between wheats in infection with G. graminis. The distribution of R. solani was negatively associated with the severity of take-all at only one site. Of symptoms of infection with G. graminis, wheat genotypes differed most in incidence of deadheads, but differences were not consistent over environments, and were associated with earliness of maturity. Wheats differed more in expression of disease than in infection with G. graminis. The course of disease was deduced from associations between the incidence of pathogens and components of plant growth and yield. G. graminis was the dominant pathogen at both sites, and caused a yield loss of 0–15% at one site, and an average 62% loss at the other. More components of yield were affected where disease was most severe.     

Microbiota in Wheat Roots Evaluated by Cloning of ITS1/2 rDNA and Sequencing

Fungi (17 species), oomycetous organisms (four species of Pythium) and a plasmodiophorid (Polymyxa graminis) were recorded in wheat roots analysed by cloning of the total ITS1/2 rDNA and sequencing of representative clones. Roots of a fourth successive wheat crop were inhabited mostly by fungal pathogens including Gaeumannomyces graminis var. tritici, Monographella nivalis var. nivalis, Ophiosphaerella sp. and Helgardia anguioides. Roots of a first wheat crop were inhabited mostly by P. graminis and saprotrophic Pythium species. Results on fungal diversity and density were compared with those obtained by pure culture isolation and morphotyping. Only M. nivalis var. nivalis and H. anguioides were identifed in wheat roots by both the molecular and the pure culture isolation methods. New and additional evidence for the ecological roles of the species recorded is discussed.     

Water use and phosphorus and potassium status of wheat seedlings colonized byGaeumannomyces graminis orPhialophora radicicola

Summary The water consumption and levels of phosphorus, potassium, and total minerals were measured for wheat seedlings colonized byGaeumannomyces graminis var.tritici, Phialophora radicicola var.radicicola, orPhialophora radicicola var.graminicola. Infection byG. graminis resulted in a considerable reduction in water consumption, and reduced level of phosphorus when the supply of phosphorus to the seedlings was plentiful. Colonization byP. radicicola var.radicicola increased levels of phosphorus and potassium, but these increases varied according to the isolate of the fungus and the supply of phosphorus and potassium available to the seedlings. Colonization byP. radicicola var.graminicola resulted in reduced water consumption by the seedlings.The results are discussed in relation to stelar cell wall thickening in wheat roots colonized byP. radicicola, and the effects on nutrient uptake of mycorrhizal root systems.