Advancing Analysis of Spatio-Temporal Variations of Soil Nutrients in the Water Level Fluctuation Zone of China’s Three Gorges Reservoir Using Self-Organizing Map

The ~350 km² water level fluctuation zone (WLFZ) in the Three Gorges Reservoir (TGR) of China, situated at the intersection of terrestrial and aquatic ecosystems, experiences a great hydrological change with prolonged winter inundation. Soil samples were collected in 12 sites pre- (September 2008) and post submergence (June 2009) in the WLFZ and analyzed for soil nutrients. Self-organizing map (SOM) and statistical analysis including multi-way ANOVA, paired-T test, and stepwise least squares multiple regression were employed to determine the spatio-temporal variations of soil nutrients in relation to submergence, and their correlations with soil physical characteristics. Results showed significant spatial variability in nutrients along ~600 km long shoreline of the TGR before and after submergence. There were higher contents of organic matter, total nitrogen (TN), and nitrate (NO3-) in the lower reach and total phosphorus (TP) in the upper reach that were primarily due to the spatial variations in soil particle size composition and anthropogenic activities. Submergence enhanced soil available potassium (K), while significantly decreased soil N, possibly due to the alterations of soil particle size composition and increase in soil pH. In addition, SOM analysis determined important roles of soil pH value, bulk density, soil particle size (i.e., silt and sand) and nutrients (TP, TK, and AK) on the spatial and temporal variations in soil quality. Our results suggest that urban sewage and agricultural runoffs are primary pollutants that affect soil nutrients in the WLFZ of TGR.     

Can the soil seed bank contribute to revegetation of the drawdown zone in the Three Gorges Reservoir Region?

The drawdown zone of the Three Gorges Reservoir Region was assumed to be completely formed in 2009 and the water level would range from ~145 m in flood season (summer) to ~175 m during non-flood season (winter). The soil seed bank is an important propagule source for vegetation restoration. In order to evaluate the potential of the soil seed bank to revegetate the drawdown zone of this region, we examined the quantitative relationships between the germinable soil seed bank and the established vertical and horizontal vegetation patterns. A total of 45 soil samples at four sites was collected to examine seed bank density, species richness, and composition using the seedling-emergence method. Forty-five species (from 20 families) germinated from the soil seed bank, and the average seed density was 4578 m⁻². The seed bank was dominated by annual plants, suggesting reestablishment of some above-ground species was plausible. However, most established woody plants and perennials were absent from the seed bank indicating a low probability of reestablishment for non-annuals through the seed bank. Thus, due to low species compositional similarity to extant vegetation and the dominance of annual plants, the soil seed bank had a low potential to restore pre-dam vegetation in the drawdown zone of the Three Gorges Reservoir Region, but its potential as a propagule source should be considered regarding the management of the drawdown zone for vegetation cover.     

A study of the zooplankton community of Billings Reservoir — São Paulo

The composition of the zooplankton of the Billings Reservoir and its variation in an eutrophic environment, subject to frequent blooms of algae (chiefly Cyanophyceae) was studied during one year (from October, 1977 to September, 1978) in two stations in the littoral and in the limnetic zone.The zooplankton community in the limnetic zone was dominated by cyclopoid copepods (Thermocyclops crassus and Metacyclops mendocinus) and by rotifers (Brachionus, Polyarthra and others) which represented, respectively 38.5 and 35.5% of the total zooplankton. At the littoral zone, cyclopoids were the most abundant (42.3%).The cladocerans were the least significant group at both stations, and calanoid copepods were found only at the littoral zone.A higher production of small filtrators, such as rotifers, cyclopoid nauplii and Bosmina sp was observed.     

Sources of novel antibiotics—aside the common roads

Microbial pathogens are becoming increasingly resistant to available treatments, and new antibiotics are badly needed, but the pipeline of compounds under development is scarce. Furthermore, the majority of antibiotics under development are improved derivatives of marketed compounds, which are at best only partially effective against prevailing resistance mechanisms. In contrast, antibiotics endowed with new mechanisms of action are expected to be highly effective against multi-drug resistant pathogens. In this review, examples are provided of new antibiotics classes in late discovery or clinical development, arising from three different avenues: (1) compounds discovered and never brought to market by large pharmaceutical companies; (2) old compounds reanalyzed and rejuvinated with today’s tools; and (3) newly discovered molecules. For each compound, we will briefly describe original discovery, mechanism of action, any known resistance, antimicrobial profile, and current status of development.     

Lesions of the Gastrointestinal Tract Resembling Regional Enteritis—A Granulomatous Disease: A Report of Three Cases

Although regional enteritis classically involves the terminal ileum, lesions showing similar histology may involve other segments of the gastrointestinal tract, either independently or concomitantly with terminal ileum involvement. Histologically the basic reaction is non-specific chronic inflammation with a granulomatous component and a variable degree of fibrosis. Such lesions in the upper gastrointestinal tract resulted in nonspecific intestinal complaints and roentgenographically showed mucosal alterations and loss of normal motility. Those with colonic involvement were difficult to differentiate from ulcerative colitis, clinically and, in the early stages, roentgenographically. With more advanced involvement, roentgenographical diagnosis was possible.Three patients with lesions illustrating the aforementioned features were diagnosed and treated. One had lesions in the colon and terminal ileum. In the others the terminal ileum was not involved; in the second the stomach, duodenum and upper jejunum were involved, and in the third the colon was involved.     

GMP Production of Liposomes—A New Industrial Approach

A new scalable liposome production system is presented, which is based on the ethanol injection technique. The system permits liposome manufacture regardless of production scale, as scale is determined only by free disposable vessel volumes. Once the parameters are defined, an easy scale up can be performed by just changing the process vessels. These vessels are fully sterilizeable and all raw materials are transferred into the sanitized and sterilized system via 0.2 μm filters to guarantee an aseptic production.

Liposome size can be controlled by the local lipid concentration at the injection point depending on process parameters like injection pressure, lipid concentration and injection rate. These defined process parameters are furthermore responsible for highly reproducible results with respect to vesicle diameters and encapsulation rates Compared to other technologies like the film method which is normally followed by size reduction through high pressure homogenization, ultrasonication or extrusion, no mechanical forces are needed to generate homogeneous and narrow distributed liposomes.

Another important advantage of this method is the suitability for the entrapment of many different drug substances such as large hydrophilic proteins by passive encapsulation, small amphiphilic drugs by a one step remote loading technique or membrane association of antigens for vaccination approaches     

A Comparison of the Whole Genome Approach of MeDIP-Seq to the Targeted Approach of the Infinium HumanMethylation450 BeadChip? for Methylome Profiling

DNA methylation is one of the most studied epigenetic marks in the human genome, with the result that the desire to map the human methylome has driven the development of several methods to map DNA methylation on a genomic scale. Our study presents the first comparison of two of these techniques - the targeted approach of the Infinium HumanMethylation450 BeadChip® with the immunoprecipitation and sequencing-based method, MeDIP-seq. Both methods were initially validated with respect to bisulfite sequencing as the gold standard and then assessed in terms of coverage, resolution and accuracy. The regions of the methylome that can be assayed by both methods and those that can only be assayed by one method were determined and the discovery of differentially methylated regions (DMRs) by both techniques was examined. Our results show that the Infinium HumanMethylation450 BeadChip® and MeDIP-seq show a good positive correlation (Spearman correlation of 0.68) on a genome-wide scale and can both be used successfully to determine differentially methylated loci in RefSeq genes, CpG islands, shores and shelves. MeDIP-seq however, allows a wider interrogation of methylated regions of the human genome, including thousands of non-RefSeq genes and repetitive elements, all of which may be of importance in disease. In our study MeDIP-seq allowed the detection of 15,709 differentially methylated regions, nearly twice as many as the array-based method (8070), which may result in a more comprehensive study of the methylome.     

Predicting Therapeutic Template by Evaluating the Structural Stability of Anti-Cancer Peptides—A Computational Approach

Clinically significant antibiotic resistance has evolved against virtually every antibiotic deployed. Yet the development of new classes of antibiotics has lagged far behind our growing need for such drugs. Antimicrobial peptides (AMPs) have emerged as novel therapeutics hailed for their bactericidal and immunomodulatory properties. However, the process of optimizing antimicrobial peptide stability, using large peptide libraries is both tedious and expensive. The intent of this study is to analyze computationally the stability of anti-cancer peptides (ACPs) and to discover a potential template from a pool of ACPs for therapeutic use. Consequently we highlighted that ACP, NK-Lysin appears advantageous over the other ACPs with respect to stability, and may provide a convenient platform for the development of anticancer therapeutic peptide.     

Advanced-level Biology—A Possible Approach

Teachers' conscious priorities in selecting topics for teaching rarely include the ‘biology/social science interfaces’; neither are many usually aware of the existence and implications of ‘hidden ideologies’ in the curriculum. This paper gives several examples of such interfaces, and stresses the point that only by redirecting the education of teachers can their awareness and priorities be suitably altered.     

POSTOPERATIVE-POSTANESTHETIC RECOVERY ROOMS—A Report on Three Years of Experience

An analysis of the three-year experience of the recovery room at the Cedars of Lebanon Hospital emphasized the importance of this phase of postoperative care. Closer observation and supervision of the patient is provided during a critical period, and specialized nursing care is constantly available. Supportive and corrective therapy can be carried out immediately by the cooperative efforts of the anesthesiologist and surgeon, who are close by. The completely equipped and properly staffed recovery room is the best assurance for reducing postoperative morbidity and mortality.     

Impacts of large dams on riparian vegetation: applying global experience to the case of China’s Three Gorges Dam

Dams are widely recognised as having significant negative consequences for the surrounding natural ecosystems and environment. China’s Three Gorges Dam, being one of the largest in the world, stands to inflict more damage than most for numerous reasons. This paper reviews the current knowledge on the impacts of dams and impoundments with regard to reservoir riparian vegetation in order to apply this knowledge to the Three Gorges Project. It also summarises research performed to date on the effects of the Three Gorges Dam on the local riparian zone and vegetation. The known and potential outcomes for local plant communities are examined in terms of their responses to the increased water levels, altered hydrological characteristics and other adverse effects associated with the construction of the dam. Vegetation responses will be diverse and change over time, but will ultimately result in a markedly different landscape and riparian zone within the Three Gorges Reservoir. These changes will take place through a loss of previous vegetation, potential invasion by exotics and result from the significant alteration in hydrological regimes and also erosion and sedimentation processes influencing and creating novel plant communities. Management of the environmental consequences of the Three Gorges Project should take into account factors associated with these processes, in order to facilitate vegetation recovery in the reservoir and to conserve biodiversity of the surrounding ecosystems.     

Development and Evaluation of the Brief Sexual Openness Scale—A Construal Level Theory Based Approach

Obtaining reliable and valid data on sensitive questions represents a longstanding challenge for public health, particularly HIV research. To overcome the challenge, we assessed a construal level theory (CLT)-based novel method. The method was previously established and pilot-tested using the Brief Sexual Openness Scale (BSOS). This scale consists of five items assessing attitudes toward premarital sex, multiple sexual partners, homosexuality, extramarital sex, and commercial sex, all rated on a standard 5-point Likert scale. In addition to self-assessment, the participants were asked to assess rural residents, urban residents, and foreigners. The self-assessment plus the assessment of the three other groups were all used as subconstructs of one latent construct: sexual openness. The method was validated with data from 1,132 rural-to-urban migrants (mean age = 32.5, SD = 7.9; 49.6% female) recruited in China. Consistent with CLT, the Cronbach alpha of the BSOS as a conventional tool increased with social distance, from .81 for self-assessment to .97 for assessing foreigners. In addition to a satisfactory fit of the data to a one-factor model (CFI = .94, TLI = .93, RMSEA = .08), a common factor was separated from the four perspective factors (i.e., migrants’ self-perspective and their perspectives of rural residents, urban residents and foreigners) through a trifactor modeling analysis (CFI = .95, TLI = .94, RMSEA = .08). Relative to its conventional form, CTL-based BSOS was more reliable (alpha: .96 vs .81) and valid in predicting sexual desire, frequency of dating, age of first sex, multiple sexual partners and STD history. This novel technique can be used to assess sexual openness, and possibly other sensitive questions among Chinese domestic migrants.     

Latently Infected Cell Activation: A Way to Reduce the Size of the HIV Reservoir?

While antiretroviral drugs can drive HIV to undetectably low levels in the blood, eradication is hindered by the persistence of long-lived, latently infected memory CD4 T cells. Immune activation therapy aims to eliminate this latent reservoir by reactivating these memory cells, exposing them to removal by the immune system and the cytotoxic effects of active infection. In this paper, we develop a mathematical model that investigates the use of immune activation strategies while limiting virus and latent class rebound. Our model considers infection of two memory classes, central and transitional CD4 T cells and the role that general immune activation therapy has on their elimination. Further, we incorporate ways to control viral rebound by blocking activated cell proliferation through anti proliferation therapy. Using the model, we provide insight into the control of latent infection and subsequently into the long term control of HIV infection.