Developments in Bioremediation of Soils and Sediments Polluted with Metals and Radionuclides. 3. Influence of Chemical Speciation and Bioavailability on Contaminants Immobilization/Mobilization Bio-processes

The biotransformation of metals is an exciting, developing strategy to treat metal contamination, especially in environments that are not accessible to other remediation technologies. However, our ability to benefit from these strategies hinges on our ability to monitor these transformations in the environment. That’s why remediation of contaminated sediments and soil requires detailed in situ characterization of the speciation of the toxic substances and their transformations with respect to time and spatial distribution. The present paper gives an overview of the literature regarding research performed in the laboratory as well as in the field.     

Production of extracellular polymeric substances from Rhodopseudomonas acidophila in the presence of toxic substances

A hydrogen-producing photosynthetic bacteria strain, Rhodopseudomonas acidophila, was used to investigate the production of extracellular polymeric substances (EPS) in the presence of toxic substances and the effect of toxicants on bacterial surface characteristics. Addition of the toxic substances including Cu(II), Cr(VI), Cd(II) and 2,4-dichlorophenol (2,4-DCP) stimulated the production of EPS but reduced the cell dry weight. At concentrations of 30 mg l⁻¹ Cu(II), 40 mg l⁻¹ Cr(VI), 5 mg l⁻¹ Cd(II) and 100 mg l⁻¹ 2,4-DCP, the EPS content increased by 5.5, 2.5, 4.0 and 1.4 times, respectively, than the control. These toxic substances also greatly influenced the proteins/carbohydrates ratio of EPS. The ratios in the presence of toxic substances were always higher than that of control. Furthermore, under toxic conditions, the increase in the protein content far exceeded than that of others in EPS, suggesting that extracellular proteins could protect cells against toxic substances. The toxic substances significantly changed the surface characteristics and flocculation ability of R. acidophila, such as surface energy, relative hydrophobicity and free energy of adhesion.     

Biological bleaching of water-soluble coal macromolecules by a basidiomycete strain

There is need for new effective technologies to convert coal into environmentally acceptable liquid fuels. Thermochemical coal-conversion processes occur under extreme conditions. Thus there is a potential to use the biotransformation of coal as a cheap alternative method. A basidiomycete strain, which decomposes coal macromolecules, was isolated from humic-acid-rich soil of a lignite surface-mining region. The isolate showed the ability to decolorize liquid dark-brown media containing water-soluble coal-derived substances (humic acids). The presence of an easily available substrate is necessary for the biodegradation. The influence of different culture conditions on the bleaching effect was studied. Evidence for decomposition of water-soluble coal substances was provided by measuring the decrease of absorbance and the modification in the distribution of molecular masses. The degradation process resulted in a complete decolorization of the coal-derived humic acids and was also combined with massive alterations in their molecular structure. Solid-state #13C-NMR spectroscopy showed an increase of carboxylic groups as well as hydroxylated and methoxylated aliphatic groups, which indicates an oxidative attack. Enzymatic analysis showed the presence of a Mn peroxidase in the culture supernatant. Extracellular lignin peroxidase and laccase activities were not detectable. The production of the peroxidase was induced by addition of humic acids. But, in vitro, this enzyme did not cause a decolorization or reduction in molecular mass of the coal-derived humic acids. Received: 30 May 1996 / Received revision: 11 September 1996 / Accepted: 13 September 1996     

The periphyton as a multimetric bioindicator for assessing the impact of land use on rivers: an overview of the Ardières-Morcille experimental watershed (France)

Developing new biological indicators for monitoring toxic substances is a major environmental challenge. Intensive agricultural areas are generally pesticide-dependent and generate water pollution due to transfer of pesticide residues through spray-drift, run-off and leaching. The ecological effects of these pollutants in aquatic ecosystems are broad-ranging owing to the variety of substances present (herbicides, fungicides, insecticides, etc.). Biofilms (or periphyton) are considered to be early warning systems for contamination detection and their ability to reveal effects of pollutants led researchers to propose a variety of methods to detect and assess the impact of pesticides. The present article sought to provide new insights into the ecological significance of biofilm microbial communities and to discuss their bioindication potential for water quality and land use by reporting on 4 years of research performed on the French Ardières-Morcille experimental watershed (AMEW). Various biological indicators have been applied during several surveys on AMEW, allowing the characterisation of (i) the structure and diversity of biofilm communities [community level finger printing (CLFP) such as PCR–DGGE and pigment classes], (ii) functions associated with biofilm [community level physiological profiles (CLPP) such as extracellular enzymes, pesticides biodegradation or carbon sources biodegradation] and (iii) biofilm tolerance assessment (pollution-induced community tolerance, PICT) of the main contaminant in the AMEW (copper and diuron). Approaches based on CLFPs and PICT were consistent with each other and indicated the upstream–downstream impact due to the increasing land use by vineyards and the adaptation of algal and bacterial communities to the pollution gradient. CLPPs gave a contrasted bioindication because some parameters (most of the tested extracellular enzymes activities) did not detect a pollution gradient. Such CLPPs, CLFPs and PICT methods applied to biofilm could constitute the basis for a relevant in situ assessment both for chemical effects and aquatic ecosystem resilience.     

A review on substances and processes relevant for optical remote sensing of extremely turbid marine areas, with a focus on the Wadden Sea

The interpretation of optical remote sensing data of estuaries and tidal flat areas is hampered by optical complexity and often extreme turbidity. Extremely high concentrations of suspended matter, chlorophyll and dissolved organic matter, local differences, seasonal and tidal variations and resuspension are important factors influencing the optical properties in such areas. This review gives an overview of the processes in estuaries and tidal flat areas and the implications of these for remote sensing in such areas, using the Wadden Sea as a case study area. Results show that remote sensing research in extremely turbid estuaries and tidal areas is possible. However, this requires sensors with a large ground resolution, algorithms tuned for high concentrations of various substances and the local specific optical properties of these substances, a simultaneous detection of water colour and land–water boundaries, a very short time lag between acquisition of remote sensing and in situ data used for validation and sufficient geophysical and ecological knowledge of the area.     

Population biobanks and returning individual research results: mission impossible or new directions?

Historically, large-scale longitudinal genomic research studies have not returned individual research results to their participants, as these studies are not intended to find clinically significant information for individuals, but to produce ‘generalisable’ knowledge for future research. However, this stance is now changing. Commentators now argue that there is an ethical imperative to return clinically significant results and individuals are now expressing a desire to have them. This shift reflects societal changes, such as the rise of social networking and an increased desire to participate in medical decision-making, as well as a greater awareness of genetic information and the increasing ability of clinicians to use this information in health care treatment. This paper will discuss the changes that have prompted genomic research studies to reconsider their position and presents examples of projects that are actively engaged in returning individual research results.     

Degradation of lignite (low-rank coal) by ligninolytic basidiomycetes and their manganese peroxidase system

Ligninolytic basidiomycetes (wood and leaf-litter-decaying fungi) have the ability to degrade low-rank coal (lignite). Extracellular manganese peroxidase is the crucial enzyme in the depolymerization process of both coal-derived humic substances and native coal. The depolymerization of coal by Mn peroxidase is catalysed via chelated Mn(III) acting as a diffusible mediator with a high redox potential and can be enhanced in the presence of additional mediating agents (e.g. glutathione). The depolymerization process results in the formation of a complex mixture of lower-molecular-mass fulvic-acid-like compounds. Experiments using a synthetic ¹⁴C-labeled humic acid demonstrated that the Mn peroxidase-catalyzed depolymerization of humic substances was accompanied by a substantial release of carbon dioxide (17%–50% of the initially added radioactivity was released as ¹⁴CO₂). Mn peroxidase was found to be a highly stable enzyme that remained active for several weeks under reaction conditions in a liquid reaction mixture and even persisted in sterile and native soil from an opencast mining area for some days. Received: 31 July 1998 / Received revision: 29 September 1998 / Accepted: 2 October 1998     

Astrocatalysis—Abiogenic synthesis and chemical evolution at pregeological stages of the Earth’s formation

The Earth’s biosphere appeared in a self-organization process along with the appearance of the Solar System. It is shown, based on the methods of self-organization examination and existing knowledge, that major stages of the chemical evolution in the early development of the biosphere include the “cold prehistory of life” in dense molecular nebulae, “pre-planetary chemocoenosis,” “RNA-world” in a circumsolar nebula, and primary biocoenoses of protocells (life) on the planetary bodies. Estimates for carbon in the primordial biosphere on the young Earth’s surface give 2.4 × 10¹⁹ kg. The decay of the primordial Earth’s biomass and biogeochemical cycles in 2.5 Myr led to the “planet of bacteria” with 2.0 × 10¹⁵ kg of biota in the Proterozoic (at the time of an oxygenated atmosphere). The main parameters (pressure, temperature, and state of catalytic solid phase) are estimated for these stages of the early evolution of life. It is shown that the abiogenic synthesis of the primordial matter was preformed in the Solar System on a grand scale with practically every atom in nanoparticles-catalysts participating. Selection among catalytically active nanoparticles worked towards the ability to synthesize high molecular compounds in a protoplanetary disk. Autocatalysts participated in the preplanetary chemical evolution, beginning from such simple substances as ethylene or glycolaldehyde. Primary synthesis of autocatalysts depended on external sources of energy, e.g., on ultraviolet radiation.     

Cuban Home Gardens and Their Role in Social–Ecological Resilience

Cuba’s political and economic isolation in today’s globalised world demands constant adaptation by its inhabitants. The Cubans’ capacity to adapt increases their ability to cope with change and to reshape local ecological and social systems, creating a more resilient system. Worldwide, home gardens are a community’s most adaptable and accessible land resource and are an important component in reducing vulnerability and ensuring food security. The role of Cuban home gardens in relation to political change and economic crisis was investigated in Trinidad de Cuba using standard ethnobotanical research methods. Major events, such as the collapse of the Soviet Union and the subsequent economic crisis as well as frequently changing Cuban policies on agriculture, food security, religious freedom and healthcare, have had an impact on household decision-making, influencing home garden composition and management. Social networking surrounding home garden produce plays an essential part in the continuous adaptation to change, aiming to increase a diversity of resources and strategies, hence resilience.     

烟草废弃物中的难降解有机物的微生物降解研究进展

烟草废弃物的资源化利用及无害处理过程,需要利用微生物高效降解其中的难降解物质,如木质素与尼古丁。本文主要综述烟草废弃物中难降解物质的生物降解研究进展。迄今,已经发现了不少木质素和尼古丁的微生物降解菌株,对其降解机理及应用已有不少研究报道,但其在烟草废弃物处理中的应用方面报道较少。木质素和尼古丁降解菌可以用于废次烟叶（烟梗）木质素的消减和尼古丁去除,但同时也需要考察菌株的降解能力和应用环境的适用性。具备降解木质素和尼古丁双重功能的菌株更有应用前景,但迄今发现较少。基于全基因组分析和微生物组学技术的复合菌群的研究也是重要的研究方向,将推动含木质素和尼古丁等多种难降解物质的废次烟叶的处置技术发展和实际应用。     

Post-Soviet Placebos: Epistemology and Authority in Russian Treatments for Alcoholism

The dominant modalities of treatment for alcoholism in Russia are suggestion-based methods developed by narcology—the subspecialty of Russian psychiatry which deals with addiction. A particularly popular method is the use of disulfiram—an alcohol antagonist—for which narcologists commonly substitute neutral substances. Drawing on 14 months of fieldwork at narcological clinics in St. Petersburg, this article examines the epistemological and institutional conditions which facilitate this practice of “placebo therapy.” I argue that narcologists’ embrace of such treatments has been shaped by a clinical style of reasoning specific to a Soviet and post-Soviet psychiatry, itself the product of contested Soviet politics over the knowledge of the mind and brain. This style of reasoning has facilitated narcologists’ understanding of disulfiram as a behavioral, rather than a pharmacological, treatment and has disposed them to amplify patients’ responses through attention to the performative aspects of the clinical encounter and through management of the treatment’s broader reputation as an effective therapy. Moreover, such therapies have generally depended upon, and helped to reinforce, clinical encounters premised on a steeply hierarchical physician–patient relationship.     

Prospective of the cosmeceuticals derived from marine organisms

Cosmeceuticals, derived from the words ‘cosmetic and pharmaceutical’, have drug-like benefits and contain active ingredients such as vitamins, phytochemicals, enzymes, antioxidants, and essential oils. Cosmeceuticals have attracted increased attention because of their beneficial effects on human health. Bioactive substances derived from marine organisms have diverse functional roles as a secondary metabolite and these properties can be applied to the developments of novel pharmaceuticals and cosmeceuticals. Recently, extensive studies have been conducted on the general aspects of the chemical structures, physical and biochemical properties, and biotechnological applications of bioactive substances derived from marine organisms. In this review, we have discussed recent progresses in the biotechnological applications of bioactive substances from marine organisms as cosmeceuticals.     

Lactic acid bacteria: inhibition of angiotensin converting enzyme in vitro and in vivo

A total of 26 strains of wild-type lactic acid bacteria, mainly belonging to Lactococcus lactis and Lactobacillus helveticus, were assayed in vitro for their ability to produce a milk fermentate with inhibitory activity towards angiotensin converting enzyme (ACE). It was clear that the test strains in this study, in general, produce inhibitory substances in varying amounts. Using a spectrophotometric assay based on amino group derivatization with ortho-phthaldialdehyde as a measure of relative peptide content, it was shown that there is a significant correlation between peptide formation and ACE inhibition, indicating that peptide measurement constitutes a convenient selection method. The effect of active fermentates on in vivo ACE activity was demonstrated in normotensive rats. The pressor effect of angiotensin I (0.3 μg/kg) upon intravenous injection was significantly lower when rats were pre-fed with milks fermented using two strains of Lactobacillus helveticus. An increased response to bradykinin (10 μg/kg, intravenously injected) was observed using one of these fermented milks. It is concluded that Lactobacillus helveticus produces substances which in vivo can give rise to an inhibition of ACE. The inhibition in vivo was low compared to what can be achieved with classical ACE inhibitors. The clinical relevance of this finding is discussed. This work is the first in which an effect of fermented milk on ACE in vivo has been demonstrated, measured as decreased ability to convert angiotensin I to angiotensin II. This revised version was published online in June 2006 with corrections to the Cover Date.     

Considering human toxicity as an impact category in life cycle assessment

Characterization of toxic chemicals with relevance to human exposure does normally not belong to Life Cycle Assessments (LCA) and is still a topic of research. The concept of hazard potential classes proposed in this paper is primarily based on threshold limit values that are considered to be a measure of the severity of potential effects. In the absence of threshold limit values the R-phrases of the ordinance of dangerous substances are used. Substances are assigned to five hazard potential classes (A to E). Potentially dangerous chemicals are identified and substances of low toxicological relevance are excluded from further evaluation. The location where a probable exposure might occur (indoor versus outdoor) and inter-media transport of substances is considered. The product comparison is based both on the results of the proposed “semi-quantitative screening method” and on toxicological expert knowledge.     

Athletic aids: fact or fiction?

A major problem facing physicians involved in the daily care of amateur athletes in international competition is that of so-called doping. While there are many substances used that might be considered ineffectual or physiologic, the two main categories of substances considered as doping agents are stimulants and anabolic steroids. No substance is as yet known that will improve an athlete''s performance. Often such substances are taken in error rather than in a misguided attempt to improve one''s ability. These substances can be dangerous and, because of this, doping rules were established basically to protect the athlete. Anabolic steroids are particularly dangerous; they usually are taken by those engaged in lifting or throwing sports in an attempt to improve performance by increasing muscle bulk. There is as yet no scientific proof that performance is improved. Dope testing for stimulants should be carried out in a quantitative rather than qualitative manner so that the athlete who has taken a small amount of a so-called stimulant (such as an asthma or common cold preparation) would not be excluded from competition. Rigid testing for anabolic steroids should be continued.     

The multifunctionality of expression systems in Bacillus subtilis: Emerging devices for the production of recombinant proteins

Bacillus subtilis is a successful host for producing recombinant proteins. Its GRAS (generally recognized as safe) status and its remarkable innate ability to absorb and incorporate exogenous DNA into its genome make this organism an ideal platform for the heterologous expression of bioactive substances. The factors that corroborate its value can be attributed to the scientific knowledge obtained from decades of study regarding its biology that has fostered the development of several genetic engineering strategies, such as the use of different plasmids, engineering of constitutive or double promoters, chemical inducers, systems of self-inducing expression with or without a secretion system that uses a signal peptide, and so on. Tools that enrich the technological arsenal of this expression platform improve the efficiency and reduce the costs of production of proteins of biotechnological importance. Therefore, this review aims to highlight the major advances involving recombinant expression systems developed in B. subtilis, thus sustaining the generation of knowledge and its application in future research. It was verified that this bacterium is a model in constant demand and studies of the expression of recombinant proteins on a large scale are increasing in number. As such, it represents a powerful bacterial host for academic research and industrial purposes.     

Biological tests of physiologically active compounds (approaches): Communication II

This review considers the methods of investigation proposed by L. A. Piruzyan in the field of preclinical trials of physiologically active compounds: (1) the search for new physiologically active compounds illustrated by analysis of the developmental mechanisms of some diseases, such as jaundice of the newborn, renal and liver insufficiency, acute drug-induced intoxication, discoid and systemic lupus erythematosus, and lupus-like syndrome; (2) experimental studies on safety of medicinal substances—the testing of substances for mutagenicity and embryotoxicity, the preparation of compounds with antimutagenic and anticarcinogenic properties, the determination of preserved blood characteristics; (3) the stabilization of medicinal preparations for use—with drug oxidation inhibitors, and substances contained in liposomes. The ligand pathology concept is presented. The necessity of an individualized approach for assessment of chemical compound safety for humans in emphasized: it should be based on the activity determination of certain enzymes in each subject. Deceased.     

Some notes on the theory of reaction rates: Enzymatic reactions

A generalized model of an enzymatic reaction in a biological system is used for the construction of a possible model of the “concentrating mechanism” after the introduction of a tracer, and for the formulation of an excretion rate of substances reabsorbed or actively secreted into the urine by the kidneys. In considering this generalized model of the enzymatic reaction, the term “tracer” is used in a limited sense, and it is concluded that a linear system is suitable for the study of the kinetics of the tracer—even in the case when the transport of the tracer between compartments is due to an enzymatic reaction. The rate coefficients of the linear differential systems, which are dependent on the state of the enzymatic system, are functions of the amount of the substrates, as well as of the amounts of activators and inhibitors of the enzymatic reaction and of the amount of the substances, which are responsible for the enzyme production.     

Induction of apoptosis in cultured cells by extracts from shiitake (Lentinula edodes) mycelial culture broth

Extracts fromshiitake (Lentinula edodes) mycelial culture broth, by an organic solvent ethyl acetate, inhibited the proliferation of cultured cells. At lower concentrations (1.25–15 μg/ml), this inhibition, measured by the MTT assay, was dose- and cell line-dependent. Inhibition of tumor cells, such as Caski, SiHa, HeLa, HP-1 and A375, byL. edodes-436 extracts was stronger than inhibition of normal cells (3T3). At 20 μg/ml, the extracts induced changes in cell shape, DNA-fragmentation and the activation of caspase-3. The extracts also inhibited the binding of E2F protein to its promoter. The results suggest that extracts ofL. edodes culture broth contain substances that have the ability to induce apoptosis in the cultured cells.