Gap analyses of priority wild relatives of food crop in current ex situ and in situ conservation in Indonesia

Conservation programmes are always limited by available resources. Careful planning is therefore required to increase the efficiency of conservation and gap analysis can be used for this purpose. This method was used to assess the representativeness of current ex situ and in situ conservation actions of 234 priority crop wild relatives (CWR) in Indonesia. This analysis also included species distribution modelling, the creation of an ecogeographical land characterization map, and a complementarity analysis to identify priorities area for in situ conservation and for further collecting of ex situ conservation programmes. The results show that both current ex situ and in situ conservation actions are insufficient. Sixty-six percent of priority CWRs have no recorded ex situ collections. Eighty CWRs with ex situ collections are still under-represented in the national genebanks and 65 CWRs have no presence records within the existing protected area network although 60 are predicted to exist in several protected areas according to their potential distribution models. The complementarity analysis shows that a minimum of 61 complementary grid areas (complementary based on grid cells) are required to conserve all priority taxa and 40 complementary protected areas (complementary based on existing protected areas) are required to conserve those with known populations within the existing in situ protected area network. The top ten of complementary protected areas are proposed as the initial areas for the development of CWR genetic reserves network in Indonesia. It is recommended to enhanced coordination between ex situ and in situ conservation stakeholders for sustaining the long term conservation of CWR in Indonesia. Implementation of the research recommendations will provide for the first time an effective conservation planning of Indonesia’s CWR diversity and will significantly enhance the country’s food and nutritional security.

     

Which moss is which? Identification of the threatened moss Orthodontium gracile using molecular and morphological techniques

Taxonomic misidentification has potentially serious consequences for the management of threatened species. Closely related moss species are often difficult to distinguish from each other using morphological characteristics. Here we compared the use of molecular (DNA barcoding of the trnL-F intron, AFLPs) and morphological techniques to demonstrate that ex situ cultures, held for re-introduction trails, of the UK critically endangered moss Orthodontium gracile were contaminated with the potentially invasive species O. lineare. Barcoding techniques and AFLPs were both successful in determining Orthodontium species identity. There was some discrepancy between determinations from molecular and morphological techniques and some individuals were misidentified using morphological characteristics alone. When species identity is critical, for example prior to re-establishment or re-introduction programmes, we recommend that identity of mosses and other bryophytes be established by molecular techniques, in particular barcoding of the trnL-F intron.     

Decision analysis for the planning and assessment of ex situ management: An application to the endangered mahogany glider

Ex situ (‘off-site’) management refers to keeping species in artificial conditions away from their natural habitat and includes captive breeding facilities, botanical gardens and seed banks. There is scope for ex situ programmes to be more commonly used for supplementing or establishing wild populations. However, undertaking ex situ management comes with risks, costs and uncertainties, which must be assessed in the context of available in situ (‘on-site’) management options. The PACES (Planning and Assessment for Conservation through Ex situ management) tool tailors the principles of structured decision-making to the specific problem of assessing and comparing ex situ and in situ management options. We applied the PACES tool to the mahogany glider (Petaurus gracilis), a threatened arboreal marsupial endemic to north Queensland, Australia. Through an expert elicitation process, we predicted the likely benefits of an ex situ and two in situ management options, as compared to a baseline ‘do-nothing’ scenario. The ‘in situ plus’ alternative (where extra resources are dedicated to in situ management) was predicted to result in the largest population increase according to the participants' best estimates. However, this benefit came at a much larger cost than the ex situ alternative, and without the benefit of an ex situ insurance population. The PACES tool assessment allowed the Mahogany Glider Recovery Team to document and plan the financial costs, risks and benefits of potential future management options for the mahogany glider, laying a transparent basis for future assessment and decision-making.     

High genetic diversity of in situ and ex situ populations of Madagascan coffee species: further implications for the management of coffee genetic resources

The genetic diversity of endemic Madagascan Coffea species has not received any considerable attention, despite the high extinction threat facing most of the species on the island. In order to address this shortfall, we assessed and compared the genetic diversity and allelic richness of ex situ and in situ populations for four selected species, and 18 ex situ populations maintained at the Kianjavato Coffee Research Station. We also investigated the possibility of in situ and ex situ hybridization events for Madagascan coffee, both within and between species. For these purposes, we used 18 nuclear microsatellite markers, on a total of 37 Coffea populations (4 in situ and 33 ex situ) representing a total of 398 genotypes (96 in situ and 302 ex situ) for 23 species. Our study showed (1) strong differentiation between Madagascan Coffea species; (2) good differentiation between all the populations studied, including those from the same locality (even when the area of the locality was restricted); (3) good evidence for both in situ and ex situ hybridization, although in situ hybridization appeared to be limited; (4) much higher genetic diversity within in situ collections compared to ex situ collections; and (5) that, despite limitations, the Kianjavato Coffee Research Station collection is an extremely valuable resource of Madagascan coffee germplasm. Recommendations for in situ and ex situ germplasm conservation are discussed.     

Fine‐ and Broad‐Scale Approaches to Understanding the Evolution of Aggression in Crickets

Male field crickets frequently engage in agonistic contests to establish dominance in social interactions and gain access to mate attraction territories. Crickets (Orthoptera: Gryllidae) are often used as a model taxon to study aggression, but limited documentation of aggression in some cricket species hinders our understanding of its evolutionary costs and benefits. Our study investigated cricket aggression at two scales: the within‐species scale for two cricket species, Gryllus assimilis and G. veletis, whose aggression had not been adequately documented and the among‐species scale to detect evolutionary patterns in species’ levels of aggression. In both G. veletis and G. assimilis, winners spent more time being aggressive than losers, but they were not larger or heavier. Collectively, our results reveal that G. veletis males are more aggressive than G. assimilis. Male G. veletis had higher aggression scores that male G. assimilis. The majority of G. veletis contests escalated to grappling (a highly aggressive behavior), while less than one quarter of G. assimilis contests escalated to grappling. Further, G. veletis males transitioned between two of the most aggressive behaviors most often while G. assimilis transitioned between two of the least aggressive behaviors most often. We integrate this new information on aggression for G. assimilis and G. veletis with previously documented aggression data for many cricket species to investigate aggression in a broader evolutionary context than previously possible. Within a phylogenetic context, we test the hypothesis that species whose males use burrows from which to call and attract females are more aggressive than species with non‐burrowing males. We found evidence consistent with this hypothesis; species with burrowing males tended to be more aggressive than species with non‐burrowing males. Together, our study provides fine‐scale understanding of aggression in two cricket species and broad‐scale evolutionary context for aggression across cricket species.     

Genetic diversity and structure of Pinus dabeshanensis revealed by expressed sequence tag-simple sequence repeat (EST-SSR) markers

Assessing patterns of genetic variation in rare endangered species is critical for developing both in situ and ex situ conservation strategies. Pinus dabeshanensis Cheng et Law is an endangered species endemic to the Dabieshan Mountains of eastern China. To obtain fundamental information of genetic diversity, population history, effective population size, and gene flow in this species, we explored patterns of genetic variation of natural populations, in addition to an ex situ conserved population, using expressed sequence tag-simple sequence repeats (EST-SSR) markers. Our results revealed moderate levels of genetic diversity (e.g., H_E = 0.458 vs. H_E = 0.423) and a low level of genetic differentiation (F_ST = 0.028) among natural and conserved populations relative to other conifers. Both contemporary and historical migration rates among populations were high. Bayesian coalescent-based analyses suggested that 3 populations underwent reductions in population size ca. 10,000 yr ago, and that two populations may have experienced recent genetic bottlenecks under the TPM. Bayesian clustering revealed that individuals from the ex situ population were largely assigned to the ‘red’ cluster. Additionally, our results identified private alleles in the natural populations but not in the ex situ population, suggesting that the ex situ conserved population insufficiently represents the genetic diversity present in the species. Past decline in population size is likely to be due to Holocene climate change. Based on the genetic information obtained for P. dabeshanensis, we propose some suggestions for the conservation and efficient management of this endangered species.     

Optimizing the genetic management of reintroduction projects: genetic population structure of the captive Northern Bald Ibis population

Many threatened species are bred in captivity for conservation purposes and some of these programmes aim at future reintroduction. The Northern Bald Ibis, Geronticus eremita, is a Critically Endangered bird species, with recently only one population remaining in the wild (Morocco, Souss Massa region). During the last two decades, two breeding programs for reintroduction have been started (in Austria and Spain). As the genetic constitution of the founding population can have strong effects on reintroduction success, we studied the genetic diversity of the two source populations for reintroduction (‘Waldrappteam’ and ‘Proyecto eremita’) as well as the European zoo population (all individuals held ex situ) by genotyping 642 individuals at 15 microsatellite loci. To test the hypothesis that the wild population in Morocco and the extinct wild population in the Middle East belong to different evolutionary significant units, we sequenced two mitochondrial DNA fragments. Our results show that the European zoo population is genetically highly structured, reflecting separate breeding lines. Genetic diversity was highest in the historic samples from the wild eastern population. DNA sequencing revealed only a single substitution distinguishing the wild eastern and wild western population. Contrary to that, the microsatellite analysis showed a clear differentiation between them. This suggests that genetic differentiation between the two populations is recent and does not confirm the existence of two evolutionary significant units. The European zoo population appears to be vital and suitable for reintroduction, but the management of the European zoo population and the two source populations for reintroductions can be optimized to reach a higher level of admixture.     

珍稀濒危植物迁地保护策略中植物营养问题的探讨

营养缺乏、过量或不平衡都会直接导致植物生长繁殖障碍甚至死亡,通过改良土壤或补充矿质元素来解决这些问题是植物营养学研究的主要内容。这一学科的研究范围已经从传统人工生态系统发展到自然生态系统中。但总的来说,这一学科还没有真正渗透到珍稀濒危物种的迁地保护领域中来。中国各植物园目前正在开展大规模的珍稀濒危植物迁地保护工作,但人们都只重视了物种的引入,却忽视了它们在迁地保护过程中业已存在和可预见的生长繁殖障碍,对迁地保护植物的研究很少涉及其生长繁殖所需的营养条件。针对这一现状,本文提出了目前应开展的几项工作:(1)明确优先开展植物营养学研究的物种范围;(2)物种原产地土壤与植物化学元素背景值的分析;(3)迁地保护物种营养状况动态监测与营养诊断。该研究思路的提出,无论是从植物营养学与植物保育学的学科交叉角度,还是从珍稀濒危物种迁地保护保育策略的理论探索与解决实际问题的角度,都具有十分重要的意义。     

Capturing,protecting and restoring plant diversity in the UK: RBG Kew and the Millennium Seed Bank

Ex situ seed banking is a practical and cost-effective means of preserving wild plant diversity and a crucial complement to the in situ conservation and restoration of species and habitats. As pressures on the natural environment have grown, so has the call for seed banks to provide scientifically-robust,practical solutions to seed-related problems in nature conservation, from single-species recovery and reintroduction to the restoration of complex, dynamic communities at the largest scales. In this paper, we discuss how the Royal Botanic Gardens, Kew and its Millennium Seed Bank have responded to this call in the United Kingdom. We demonstrate that banked seed collections can provide a range of otherwiseunavailable, high quality, known-origin, genetically-diverse biological materials. The data, expertise and specialist facilities that accompany these collections are also valuable, helping overcome constraints to the collection, production and effective use of native seed. Challenges remain-to ensure ex situ collections protect the species and genetic diversity that will enable plants to adapt to a changing environment, and to find new ways for seed banks to mobilise their resources at a landscape scale.     

Guiding the prioritization of the most endangered and evolutionary distinct birds for new zoo conservation programs

Zoos have played a pivotal role in the successful reinforcement and reintroduction of species threatened with extinction, but prioritization is required in the face of increasing need and limited capacity. One means of prioritizing between species of equal threat status when establishing new breeding programs is the consideration of evolutionary distinctness (ED). More distinct species have fewer close relatives such that their extinction would result in a greater overall loss to the Tree of Life. Considering global ex situ holdings of birds (a group with a complete and well‐detailed evolutionary tree), we investigate the representation of at‐risk and highly evolutionarily distinct species in global zoo holdings. We identified a total of 2,236 bird species indicated by the Zoological Information Management System as being held in zoological institutions worldwide. As previously reported, imperiled species (defined as those possessing endangered or critically endangered threat status) in this database are less likely to be held in zoos than non‐imperiled species. However, we find that species possessing ED scores within the top 10% of all bird species are more likely to be held in zoos than other species, possibly because they possess unique characteristics that have historically made them popular exhibits. To assist with the selection of high priority ED species for future zoo conservation programs, we provide a list of imperiled species currently not held in zoos, ranked by ED. This list highlights species representing particular priorities for ex situ conservation planners, and represents a practical tool for improving the conservation value of zoological collections.     

菜粉蝶对两种迁地保护的兰科植物传粉和繁殖成功的作用

迁地保护是防止物种灭绝的有效措施。为了解在新栖息地兰科植物与昆虫之间的关系, 从而为兰科植物的保护提供借鉴, 作者对迁地栽培于深圳市全国兰科植物种质资源保护中心的本地种血叶兰(Ludisia discolor)和外来种银带虾脊兰(Calanthe argenteo-striata)的传粉系统和繁殖策略进行了观察和研究。血叶兰和银带虾脊兰都具有白色小花组成的花序, 且花有距。在开放栽培条件下, 菜粉蝶(Pieris rapae)是这两种兰科植物唯一有效的传粉者。菜粉蝶携带血叶兰和银带虾脊兰花粉块的部位分别是降落时平衡身体的左侧足部和取食花蜜的喙。两种兰科植物传粉效率较高, 花粉移走与沉降的比值分别为1.14 : 1和0.74 : 1。血叶兰的结实率在2007和2008两年间无显著差异, 且均高于银带虾脊兰。究其原因, 一方面是由于它为传粉者提供报酬; 另一方面是因为血叶兰的花期与菜粉蝶的盛发期相吻合, 有利于充分利用传粉者; 而银带虾脊兰的花期滞后于菜粉蝶的盛发期, 传粉者缺失使得部分花未能授粉。血叶兰和银带虾脊兰都是高度自交亲和的物种, 但不存在无融合生殖和自动自花授粉的现象; 自交和异交的繁殖成功率无显著差异。这两种兰科植物可能存在由传粉者导致的自交现象。血叶兰和银带虾脊兰在迁地栽培到兰科中心后生长良好, 每年花期都有自然结果的现象, 植株周围有新生幼苗的建立, 种群有逐渐扩大的趋势, 显示出迁地保护的可行性。可以预测若干年后, 这两个种在兰科中心具有建立稳定种群的可能性。     

Increasing zoo’s conservation potential through understanding barriers to holding globally threatened amphibians

The global amphibian crisis and current un-mitigatable threats make ex situ programmes a crucial complementary action for the conservation of many amphibians. Zoos and aquariums are some of the most important and influential groups of institutions to undertake this yet the proportion of globally threatened amphibians in zoos is just 23.9% compared to over 40% in the wild. To identify key barriers to holding globally threatened amphibian species in ex situ collections, as well as potential strategies to mitigate such barriers, we surveyed amphibian curators across 107 institutions worldwide. A lack of resources (including budget, staffing and space) was perceived as the most significant barrier (87% of respondents) and the barrier most frequently identified (119 responses), followed by disease/biosecurity concerns (31 responses), and a lack of staff expertise/knowledge (30 responses). Difficulty displaying amphibians due to cryptic behaviour or colouration (65% or respondents) and difficulty attracting visitor interest (60% of respondents) were seen as insignificant barriers. Nine key priority action areas were identified, with increasing interest from zoo leadership and budget allocation identified as the most important (49% of suggested solutions). Increasing visitor interest in amphibians to encourage increased investment and engaging with range country facilities were highlighted as two ways to address barriers. Careful collection planning considering both the need and suitability of a species for captive breeding is also key, whilst critically assessing the role each species will play in a collection will enable a better assessment of the collection’s conservation value rather than using global threat status alone.     

Ecophysiological responses of two closely related Magnoliaceae genera to seasonal changes in subtropical China

Aims Plants use a variety of hydraulic strategies to adapt to seasonal drought that differ by species and environmental conditions. The early-diverging Magnoliaceae family includes two closely related genera with contrasting leaf habits, Yulania (deciduous) and Michelia (evergreen), which naturally inhabit temperate and tropical regions, respectively. Here, we evaluate the hydraulic strategy of species from both genera that have been ex situ conserved in a subtropical region to determine how they respond to the novel cool–dry season climatic pattern.Methods We measured ecophysiological traits in five Michelia and five Yulania species conserved in the South China Botanical Garden in both wet and dry season conditions and monitored the whole-year sap flow for four of these species.Important findings We found that Magnoliaceae species that have been ex situ conserved in a subtropical climate did not suffer from excessive water stress due to the mild drought conditions of the dry season and the ecophysiological adjustments the species made to avoid this stress, which differed by leaf habit. Specifically, deciduous species completely shed their leaves during the dry season, while evergreen species decreased their turgor loss points, dry mass based photosynthetic rates, stomatal conductance and specific leaf areas (SLAs) compared to wet season measurements. In comparing the two distinct leaf habits during the wet season, the leathery-leaved evergreen species had higher leaf hydraulic conductance and leaf to sapwood area ratios than the papery-leaved deciduous species, while the deciduous species had greater hydraulic conductivity calculated on both a stem and leaf area basis, dry mass based photosynthetic rates, leaf nutrients, SLAs and stomatal sizes than the evergreen species. Interestingly, species from both genera maintained similar sap flow in the wet season. Both photosynthetically active radiation and vapour pressure deficit affected the diurnal patterns of sap flow in the wet season, while only vapour pressure deficit played a dominant role in the dry season. This study reveals contrasting hydraulic strategies in Yulania and Michelia species under subtropical seasonal conditions, and suggests that these ecophysiological adjustments might be affected more by leaf habit than seasonality, thus reflecting the divergent evolution of the two closely related genera. Furthermore, we show that Magnoliaceae species that are ex situ conserved in a subtropical climate are hydraulically sound, a finding that will inform future conservation efforts of this ancient family under the threat of climatic change.     

Divergence between the Courtship Songs of the Field Crickets Gryllus texensis and Gryllus rubens (Orthoptera, Gryllidae)

Acoustic mating signals are often important as both interspecific prezygotic isolating mechanisms and as sexually selected traits in intraspecific mate choice. Here, we investigate the potential for cricket courtship song to act as an isolating mechanism by assessing divergence between the courtship songs of Gryllus texensis and Gryllus rubens , two broadly sympatric cryptic sister species of field crickets with strong prezygotic isolation via the calling song and little or no postzygotic isolation. We found significant species-level differences in the courtship song, but the song has not diverged to the same extent as the calling song, and considerable overlap remains between these two species. Only two related courtship song characters are sufficiently distinct to play a possible role in prezygotic species isolation.     

On the horns of a dilemma: molecular approaches refine ex situ conservation in crisis

Seven years into this new millennium, species and habitat loss continue at an accelerated rate. While there have been individual examples of conservation success, the trend towards catastrophic loss of biological diversity persists. If we are to be successful in saving even a handful of critically endangered species, it is clear that they will need to be intensively managed using a variety of in situ and ex situ approaches. The highest profile ex situ conservation strategy is captive breeding. Although its relative role in an overall conservation management plan varies, captive breeding may present the only viable option for propagating the future of a species once rendered extinct in the wild. The study of Iyengar et al. in this issue of Molecular Ecology on one such species, the scimitar-horned oryx (Oryx dammah), represents an important contribution to ex situ conservation, demonstrating how critical insights into demographic history and population genetic structure obtained using molecular approaches may significantly contribute to captive breeding and reintroduction strategies.     

森林遗传资源保护研究进展

森林遗传资源的保护事关现代及后代的利益,已引起全球的极大关注,自70年代以来,就地保护与迁地保护作为主要的战略在森林遗传资源保护实践中使用。一般来说森林遗传资源的就地保护可以通过建立自然保护区来实现。迁地保护主要包括种子库、田间基因库、种子园及细胞或组织培养等技术。就地保护和迁地保护应当相互补充,两者结合使用是保存森林遗传多样性的有效方法。对森林遗传资源保护战略的选择以及因贸易而濒危的热带材用树及其保护问题也作了简要评述。     

Effects of terrestrial buffer zones on amphibians on golf courses

A major cause of amphibian declines worldwide is habitat destruction or alteration. Public green spaces, such as golf courses and parks, could serve as safe havens to curb the effects of habitat loss if managed in ways to bolster local amphibian communities. We reared larval Blanchard's cricket frogs (Acris blanchardi) and green frogs (Rana clamitans) in golf course ponds with and without 1 m terrestrial buffer zones, and released marked cricket frog metamorphs at the golf course ponds they were reared in. Larval survival of both species was affected by the presence of a buffer zone, with increased survival for cricket frogs and decreased survival for green frogs when reared in ponds with buffer zones. No marked cricket frog juveniles were recovered at any golf course pond in the following year, suggesting that most animals died or migrated. In a separate study, we released cricket frogs in a terrestrial pen and allowed them to choose between mown and unmown grass. Cricket frogs had a greater probability of using unmown versus mown grass. Our results suggest that incorporating buffer zones around ponds can offer suitable habitat for some amphibian species and can improve the quality of the aquatic environment for some sensitive local amphibians.     

西双版纳热带植物园引种植物物候特征比较

迁地保护是生物多样性保护的重要手段之一,前期的植物引种研究呵为迁地保护提供必要的理论支持。通过对西双版纳热带植物园内不同来源的引种植物和本地植物的4个物候期（萌叶期、落叶期、开花期和果熟期）分布格局及其气候影响因子进行对比,阐明引种植物对环境的适应性和对策。结果表明,引种植物比本地植物萌叶生长盛期更长,但对低温和干旱更加敏感的引种植物,在旱季其落叶比例明显高于本地植物,而3、4月由于气温的回升,使引种植物和本地植物在雨季之前就进入了萌叶盛期。而在繁殖物候方面,由于受气候因子影响较小,引种植物和本地植物的开花期和果熟期格局季节性表现都不明显。且规律性不强。总体上,各来源地的引种植物能根据环境的改变形成相应的生长与繁殖适应对策,可较好地适应西双版纳的环境。     

西双版纳热带植物园引种植物物候特征比较

迁地保护是生物多样性保护的重要手段之一, 前期的植物引种研究可为迁地保护提供必要的理论支持。通过对西双版纳热带植物园内不同来源的引种植物和本地植物的4个物候期(萌叶期、落叶期、开花期和果熟期)分布格局及其气候影响因子进行对比, 阐明引种植物对环境的适应性和对策。结果表明, 引种植物比本地植物萌叶生长盛期更长, 但对低温和干旱更加敏感的引种植物, 在旱季其落叶比例明显高于本地植物, 而3、4月由于气温的回升, 使引种植物和本地植物在雨季之前就进入了萌叶盛期。而在繁殖物候方面, 由于受气候因子影响较小, 引种植物和本地植物的开花期和果熟期格局季节性表现都不明显, 且规律性不强。总体上, 各来源地的引种植物能根据环境的改变形成相应的生长与繁殖适应对策, 可较好地适应西双版纳的环境。