Diet variation of a generalist fish predator,grey snapper Lutjanus griseus,across an estuarine gradient: trade‐offs of quantity for quality?

This study examined diet, prey quality and growth for a generalist fish predator, grey snapper Lutjanus griseus, at five sites across an estuarine gradient in the Loxahatchee River estuary, Florida, U.S.A. Lutjanus griseus diets shifted from dominance by low quality, intertidal crabs upstream to an increased reliance on higher quality shrimp, fishes and benthic crabs downstream. Frequency of L. griseus with empty stomachs was higher at downstream sites. Lutjanus griseus growth rates did not vary among sites. Results indicate that L. griseus may be able to compensate for lower quality prey upstream by consuming more, and thus individuals are able to maintain similar levels of energy balance and growth rates across the estuarine gradient. Elucidating mechanisms, such as compensatory feeding, that enable generalist species to remain successful across habitat conditions are critical to understanding their organismal ecology and may facilitate predictions about the response of generalists to landscape alteration.     

Isolation and characterization of microsatellites in lane snapper (Lutjanus synagris), mutton snapper (Lutjanus analis), and yellowtail snapper (Ocyurus chrysurus)

Polymerase chain reaction primer pairs for a total of 25 nuclear‐encoded microsatellites (loci) were developed from genomic DNA libraries of lane snapper (Lutjanus synagris), mutton snapper (Lutjanus analis), and yellowtail snapper (Ocyurus chrysurus). The microsatellites include 24 perfect (21 dinucleotide and three trinucleotide) and one imperfect (combination tetranucleotide/tetranucleotide) repeat motifs. A total of 32 individuals of each species were assayed for allelic variation at all 25 microsatellites; reliable amplification products were generated for lane snapper (25 loci), mutton snapper (21 loci), and yellowtail snapper (24 loci). Significant deviations from Hardy–Weinberg expectations, following Bonferroni corrections, were found for one microsatellite in lane and yellowtail snappers, and for three microsatellites in mutton snapper. All pairwise comparisons of microsatellites (all three species) did not deviate significantly from genotypic equilibrium.     

Environmental drivers of diurnal visits by transient predatory fishes to Caribbean patch reefs

Video cameras recorded the diurnal visitation rates of transient (large home range) piscivorous fishes to coral patch reefs in The Bahamas and identified 11 species. Visits by bar jack Caranx ruber, mutton snapper Lutjanus analis, yellowtail snapper Ocyurus chrysurus, barracuda Sphyraena barracuda and cero Scomberomorus regalis were sufficiently frequent to correlate with a range of biophysical factors. Patch‐reef visitation rates and fish abundances varied with distance from shore and all species except S. regalis were seen more frequently inshore. This pattern is likely to be caused by factors including close proximity to additional foraging areas in mangroves and on fore‐reefs and higher abundances close to inshore nursery habitats. Visitation rates and abundances of C. ruber, L. analis, O. chrysurus and S. regalis also varied seasonally (spring v. winter), possibly as fishes responded to temperature changes or undertook spawning migrations. The abundance of each transient predator species on the patch reefs generally exhibited limited diurnal variability, but L. analis was seen more frequently towards dusk. This study demonstrates that the distribution of transient predators is correlated spatially and temporally with a range of factors, even within a single lagoon, and these drivers are species specific. Transient predators are considered an important source of mortality shaping reef‐fish assemblages and their abundance, in combination with the biomass of resident predators, was negatively correlated with the density of prey fishes. Furthermore, transient predators are often targeted by fishers and understanding how they utilize seascapes is critical for protecting them within reserves.     

Trophic behaviour of juvenile reef fishes inhabiting interlinked mangrove–seagrass habitats in offshore mangrove islets

Stable isotope (δ¹³C and δ¹⁵N) and gut content analyses were used to investigate size‐related feeding habits of four reef fishes (the beaugregory Stegastes leucostictus, the french grunt Haemulon flavolineatum, the schoolmaster snapper Lutjanus apodus and the yellowtail snapper Ocyurus chrysurus) inhabiting an offshore (non‐estuarine) mangrove islet off Belize, Central America. Comparisons of isotopic niche space and Schoener diet similarity index suggested a low to moderate degree of niche overlap between fish size groups. The δ¹³C gradient between mangrove and seagrass prey as well as results of Bayesian mixing models revealed that sampled fishes relied mostly on seagrass prey items. Only small and large juveniles of the carnivorous species L. apodus derived a part of their diet from mangroves by targeting mangrove‐associated Grapsidae crabs and fish prey, respectively. Isotopic niche shifts were particularly obvious for carnivorous fishes that ingested larger prey items (Xanthidae crabs and fishes) during their ontogeny. The utilization of mangrove food resources is less than expected and depends on the ecology and life history of the fish species considered. This research highlights that mangrove‐derived carbon contributed relatively little to the diets of four fish taxa from an offshore mangrove islet.     

Biometric relation between body size and otolith size of seven commercial fish species of the south‐western Atlantic

Given the importance and applicability of these biometric relations, the present work aimed to verify the existence of correlations between the length of saggitae otoliths and the body size of seven south‐western Atlantic marine fish species and to generate equations to estimate the body size of these species through otolith measurements. Fifty otoliths of Centropomus parallelus, Centropomus undecimalis, Lutjanus analis, Lutjanus jocu, Lutjanus synagris, Chaetodipterus faber and Mugil curema were collected for analysis. Significant relations between otolith length and total length and otolith width and total length were found for all the species. The highest coefficient of determination was observed for Centropomus undecimalis and Lutjanus synagris, for both relations, and the lowest was observed for Mugil curema. The results show that estimates of body size of the species through biometric analyses of otoliths are reliable. Based on this, the equations generated to obtain the total length of the fish using biometric otolith data can be used in dietary studies of top predators and in paleontological recostructions of modern fish.     

Energy flow to two abundant consumers in a subtropical oyster reef food web

Oyster reefs are among the most threatened coastal habitat types, but still provide critical habitat and food resources for many estuarine species. The structure of oyster reef food webs is an important framework from which to examine the role of these reefs in supporting high densities of associated fishes. We identified major trophic pathways to two abundant consumers, gray snapper (Lutjanus griseus) and crested goby (Lophogobius cyprinoides), from a subtropical oyster reef using stomach content and stable isotope analysis. The diet of gray snapper was dominated by crabs, with shrimp and fishes also important. Juvenile gray snapper fed almost entirely on oyster reef-associated prey items, while subadults fed on both oyster reef- and mangrove-associated prey. Based on trophic guilds of the gray snapper prey, as well as relative δ¹³C values, microphytobenthos is the most likely basal resource pool supporting gray snapper production on oyster reefs. Crested goby had omnivorous diets dominated by bivalves, small crabs, detritus, and algae, and thus were able to take advantage of prey relying on production from sestonic, as well as microphytobenthos, source pools. In this way, crested goby represent a critical link of sestonic production to higher trophic levels. These results highlight major trophic pathways supporting secondary production in oyster reef habitat, thereby elucidating the feeding relationships that render oyster reef critical habitat for many ecologically and economically important fish species.     

First evidence of fish larvae producing sounds

The acoustic ecology of marine fishes has traditionally focused on adults, while overlooking the early life-history stages. Here, we document the first acoustic recordings of pre-settlement stage grey snapper larvae (Lutjanus griseus). Through a combination of in situ and unprovoked laboratory recordings, we found that L. griseus larvae are acoustically active during the night, producing ‘knock’ and ‘growl’ sounds that are spectrally and temporally similar to those of adults. While the exact function and physiological mechanisms of sound production in fish larvae are unknown, we suggest that these sounds may enable snapper larvae to maintain group cohesion at night when visual cues are reduced.     

Dichelyne (Dichelyne) bonacii n. sp. (Nematoda: Cucullanidae) from the grey snapper Lutjanus griseus and the black grouper Mycteroperca bonaci off the coast of Yucatán,Mexico

A new cucullanid, Dichelyne bonacii n. sp., is described from the intestine of the grey snapper Lutjanus griseus and the stomach of the black grouper Mycteroperca bonaci off the coast of Yucatán. The absence of a ventral precloacal sucker and the presence of 11 pairs of caudal papillae in males allocate it to the subgenus Dichelyne. It differs from its congeners in body dimensions and by having two almost equal spicules (left 712-950 and right 722-945m), two intestinal caeca and in the position of the deirids and excretory pore. Apparently, L. griseus acts as definitive host of this species, whereas M. bonaci may be considered as a postcyclic host. This new species represents the first record of a nematode of the subgenus Dichelyne in marine fishes of Mexico.     

Diet and food partitioning between juveniles of mutton Lutjanus analis,dog Lutjanus jocu and lane Lutjanus synagris snappers (Perciformes: Lutjanidae) in a mangrove‐fringed estuarine environment

Diet of juvenile mutton Lutjanus analis, dog Lutjanus jocu and lane Lutjanus synagris snappers were studied in the tropical Brazilian estuarine system of the Piraquê‐açú and Piraquê‐mirim Rivers to determine how these species share the resources in this restricted space. The three species prey principally upon Peracarida (L. synagris: relative importance index I_RIc = 29%), Natantia (L. analis and L. synagris: I_RIc = 39 and 38%, respectively), Reptantia (L. analis and L. jocu: I_RIc = 28 and 43%, respectively) and Teleostei (L. jocu: I_RIc = 24%). The three species use estuaries as nursery habitats but food overlap was not biologically significant due to a combination of interspecific differences in size, spatial distribution, microhabitat preferences and seasonal patterns of abundance and prey choice. Large marine protected areas incorporating essential habitats for all life stages are suggested to be the best tool for the management of these economically important species.     

Utilization by fishes of shallow,seagrass-covered banks in Florida Bay: 2. Diel and tidal patterns

Synopsis Diel and tidal patterns in the occurrence of water column fishes were examined on four shallow banks in Florida Bay, using continuous 72h gillnet sets. Patterns in capture rates were presumed to indicate movement of fishes on and off the seagrass-covered banks. Species that were nocturnally active on the banks included Arius felis, Mugil gyrans, Opisthonema oglinum, Harengula jaguana, Elops saurus, Lutjanus griseus, and Bairdiella chrysoura. Diurnal species included Eucinostomus gula, Lagodon rhomboides and Mugil cephalus. Strongylura notata and Mugil curema showed no consistent patterns. At the two sites with significant tidal fluctuation in water level, different activity patterns on the bank relative to tidal stage were evident for several species. At extreme low tides, water column fishes apparently left the banks to avoid stranding. Cycles of fish utilization of the bank habitat are proposed to be related to both availability of prey (diel patterns) and water level (tidal patterns). These cycles in turn influence activity patterns of predators foraging on these fishes.     

Salinity selection and preference of the grey snapper Lutjanus griseus: field and laboratory observations

Field observations were supplemented with laboratory experiments to reveal patterns of salinity selection and preference for grey snapper Lutjanus griseus (c. 21 cm total length, L_T), an ecologically and economically important species in the south‐eastern U.S.A. Fish abundance data were examined from a long‐term field survey conducted in the mangrove habitats of Biscayne Bay, Florida, where salinities ranged from <1 to 40. First, regression analyses indicated significant, positive linear relationships with salinity for both L. griseus frequency of occurrence and concentration (density when present). These patterns are inconsistent with physiological expectations of minimizing energetic osmoregulatory costs. Next, the salinity preference and swimming activity of 11 L. griseus (ranging from 18 to 23 cm L_T) were investigated using a newly developed electronic shuttlebox system. In the laboratory, fish preferred intermediate salinities in the range of 9–23. Swimming activity (measured in terms of spontaneous swimming speed) followed a parabolic relationship with salinity, with reduced activity at salinity extremes perhaps reflecting compensation for higher osmoregulatory costs. It is suspected that the basis of the discrepancy between laboratory and field observations for size classes at or near maturity ultimately relates to the reproductive imperative to move towards offshore (high‐salinity) coral‐reef habitats, a necessity that probably overrides the strategy of minimizing osmoregulatory energetic costs.     

Mycoses in red snapper (Lutjanus campechanus) caused by two deuteromycete fungi (Penicillium corylophilum and Cladosporium sphaerospermum)*

We report two species of deuteromycete fungi (Penicillium corylophilum and Cladosporium sphaerospermum) concurrently infecting the swim bladder and posterior kidney and causing erratic behavior in two specimens of wild-caught, tank-held red snapper (Lutjanus campechanus). Lesions produced by both species infiltrated the immediately surrounding tissue and produced severe pathological changes; however, the infection apparently was not systemic. Only P. corylophilum grew in the initial culture from the swim bladder and only C. sphaerospermum grew in the initial culture from the kidney. Infection may have occurred upon penetration of a syringe to deflate the swim bladder. There was no horizontal transmission to 13 other specimens of red snapper held in the same tank. This suggests that these fungi are not primary pathogens. Injection of each species into various sites in the Gulf killifish, Fundulus grandis, failed to produce infections within 1 month, suggesting differences in susceptibility among species.     

Ethnobiology of snappers (Lutjanidae): target species and suggestions for management

In this study, we sought to investigate the biology (diet and reproduction) and ethnobiology (fishers knowledge and fishing spots used to catch snappers) of five species of snappers (Lutjanidae), including Lutjanus analis, Lutjanus synagris, Lutjanus vivanus, Ocyurus chrysurus, and Romboplites saliens at five sites along the northeast (Riacho Doce, Maceió in Alagoas State, and Porto do Sauípe, Entre Rios at Bahia State) and the southeast (SE) Brazilian coast (Paraty and Rio de Janeiro cities at Rio de Janeiro State, and Bertioga, at São Paulo State.). We collected 288 snappers and interviewed 86 fishermen. The stomach contents of each fish were examined and macroscopic gonad analysis was performed. Snappers are very important for the fisheries of NE Brazil, and our results indicated that some populations, such as mutton snapper (L. analis) and lane snapper (L. synagris), are being caught when they are too young, at early juvenile stages. Local knowledge has been shown to be a powerful tool for determining appropriate policies regarding management of target species, and artisanal fishermen can be included in management processes. Other suggestions for managing the fisheries are discussed, including proposals that could provide motivation for artisanal fishermen to participate in programs to conserve resources, such as co-management approaches that utilize local knowledge, the establishment of fishing seasons, and compensation of fishermen, through 'payment for environmental services'. These suggestions may enhance the participation of local artisanal fishermen in moving to a more realistic and less top-down management approach of the fish population.     

Random PCR‐based genotyping by sequencing technology GRAS‐Di (genotyping by random amplicon sequencing,direct) reveals genetic structure of mangrove fishes

While various technologies for high‐throughput genotyping have been developed for ecological studies, simple methods tolerant to low‐quality DNA samples are still limited. In this study, we tested the availability of a random PCR‐based genotyping‐by‐sequencing technology, genotyping by random amplicon sequencing, direct (GRAS‐Di). We focused on population genetic analysis of estuarine mangrove fishes, including two resident species, the Amboina cardinalfish (Fibramia amboinensis, Bleeker, 1853) and the Duncker's river garfish (Zenarchopterus dunckeri, Mohr, 1926), and a marine migrant, the blacktail snapper (Lutjanus fulvus, Forster, 1801). Collections were from the Ryukyu Islands, southern Japan. PCR amplicons derived from ~130 individuals were pooled and sequenced in a single lane on a HiSeq2500 platform, and an average of three million reads was obtained per individual. Consensus contigs were assembled for each species and used for genotyping of single nucleotide polymorphisms by mapping trimmed reads onto the contigs. After quality filtering steps, 4,000–9,000 putative single nucleotide polymorphisms were detected for each species. Although DNA fragmentation can diminish genotyping performance when analysed on next‐generation sequencing technology, the effect was small. Genetic differentiation and a clear pattern of isolation‐by‐distance was observed in F. amboinensis and Z. dunckeri by means of principal component analysis, F_ST and the admixture analysis. By contrast, L. fulvus comprised a genetically homogeneous population with directional recent gene flow. These genetic differentiation patterns reflect patterns of estuary use through life history. These results showed the power of GRAS‐Di for fine‐grained genetic analysis using field samples, including mangrove fishes.     

First report of gastrocotylinean post-oncomiracidia (Platyhelminthes: Monogenoidea: Heteronchoinea) on gills of flyingfish (Exocoetidae), snapper (Lutjanidae), dolphinfish (Coryphaenidae), and amberjack (Carangidae) from the Gulf of Mexico: decoy hosts and the dilution effect

Larvae, identified as post-oncomiracidia of the suborder Gastrocotylinea (Monogenoidea), were collected from formalin-fixed gills excised from six species of marine fishes captured from the Gulf of Mexico off Mississippi and Florida: common dolphinfish, Coryphaena hippurus and pompano dolphinfish, Coryphaena equiselis (both Perciformes, Coryphaenidae); gray snapper, Lutjanus griseus (Perciformes, Lutjanidae); greater amberjack, Seriola dumerili (Perciformes, Carangidae); and Atlantic flyingfish, Cheilopogon melanurus and sailfin flyingfish, Parexocoetus hillianus (both Beloniformes and Exocoetidae). Based on a combination of diagnostic morphological features, the specimens were divided into two basic forms, each of which was further subdivided into two morphotypes. No gastrocotylinean post-oncomiracidium had been reported previously from these hosts. Of the six host species, only C. hippurus serves as a host (unconfirmed) for the adult of a gastrocotylinean species, suggesting that the recorded fishes from the Gulf of Mexico comprise dead-end hosts acting as decoys for the oncomiracidia. These comparatively non-susceptible “decoy hosts” apparently dilute the susceptible fish-host population and by intercepting infective larvae (oncomiracidia) decrease the abundance of parasites on their typical hosts.     

Isolation and characterization of microsatellite loci from mangrove red snapper Lutjanus argentimaculatus

Lutjanus argentimaculatus, also called mangrove red snapper, is a commercially important fish in East Asia. A proper understanding of population structure is primarily linked with the management of genetic resources in exploiting marine fisheries. Herein, seven microsatellite loci, which showed high polymorphism (observed heterozygosity per locus ranging from 0.3571 to 0.7857 and expected heterozygosity per locus ranging from 0.6236 to 0.8821), were isolated and characterized from L. argentimaculatus. Cross‐species amplifications also indicate that primers designed for these loci may be useful for further studies about other closely phylogenetic species of the family Lutjanidae.     

A major developmental defect observed in several Biscayne Bay,Florida, fish species

Synopsis Stunted or missing dorsal spines or rays, sometimes accompanied by a depression in the dorsal profile, were found in 10 fish species in six families from North Biscayne Bay. The same morphological abnormality occurred inHaemulon sciurus, H. parrai, H. plumieri, Lagodon rhomboides, Archosargus rhomboidalis, Diplodus argenteus, Lutjanus griseus, Kyphosus sectatrix, Sphoeroides testudineus, andLactrophyrys quadricornis. Another morphological abnormality, scale disorientation, was found in six species:H. parrai, L. rhomboides, A. rhomboidalis, L. griseus, andAbudefduf saxatilis. Pugheadedness, jaw deformities, and other abnormalities also were observed. The occurrence of similar deformities across such a spectrum of fishes from the same location suggests the deformity was induced by something in the environment common to all these species. Although there could be other explanations for the unusual cluster of abnormalities, it is suspected that the same environmental contaminant or group of contaminants is adversely affecting a common developmental pathway of these fishes. Biscayne Bay is an urban estuary that receives agricultural, industrial, and residential run off.     

Isolation and characterization of microsatellite DNA loci from Russell's snapper (Lutjanus russellii)

A total of 37 microsatellite loci from the Russell's snapper, Lutjanus russellii, were successfully isolated and characterized. Thirty‐four loci were polymorphic in L. russellii samples. Twenty of the 37 markers did not differ significantly from Hardy–Weinberg expected genotype proportions. Significant linkage disequilibrium was detected in one pairwise comparison. The numbers of alleles and observed heterozygosities in polymorphic loci ranged from two to 16 and from 0.41 to 0.95, respectively. These markers will be useful for studying the population genetic structure of this species.     

Evidence of multiple vicariance in a marine suture‐zone in the Gulf of Mexico

Aim Our aim was to assess whether single or multiple vicariance event(s) have occurred in a marine suture‐zone in the northern Gulf of Mexico. We estimated the divergence time of two genetically distinct groups of lane snapper (Lutjanus synagris), distributed on either side of this zone, and compared it to the timing of other vicariance events described previously in the area. Location The northern Gulf of Mexico from the Texas coastline to the Atlantic coast of South Florida, USA. The marine suture‐zone is proximal to Mobile Bay in Alabama. Methods A Bayesian Markov chain Monte Carlo (MCMC) approach was used to estimate mutation‐corrected divergence and genetic migration between eastern and western groups of lane snapper, based on genotypic differences at 13 nuclear‐encoded microsatellites obtained previously from 77 and 171 individual samples, respectively. A second estimate of divergence time for eastern and western groups of lane snapper was generated, based on 590 base pairs of DNA sequence from the mitochondrially encoded NADH dehydrogenase subunit 4 (ND4) obtained previously from 45 and 93 individual samples, respectively. Results Both classes of genetic markers (microsatellites and mtDNA) indicated a fairly recent divergence. Confidence intervals for microsatellite‐based estimates suggested that divergence began less than 21 thousand years ago (ka), while confidence intervals for mitochondrial DNA‐based estimates suggested divergence began less than 130 ka. These estimates were not consistent with vicariance events in the literature, which are hypothesized to have occurred well before 135 ka. Main conclusions These results indicate that the marine suture‐zone in the northern Gulf of Mexico features multiple vicariance events and may be characterized by a complex geological/environmental history. We suggest that processes during or after the Wisconsin glaciation (c. 110–18 ka) may have created a previously unrecognized barrier for lane snapper and possibly other species as well.     

Restored oyster reefs and living shorelines can augment predator trophic dynamics

Coastal habitat loss has led to declines in many higher trophic level predators. These declines can be mitigated through habitat restoration, which putatively enhances predator populations and trophic dynamics by creating foraging opportunities in reestablished habitat, but this lacks empirical support. Here, we assess the prediction restored coastal habitat supports sportfish feeding relationships similar to natural habitat, at restored oyster reefs (Crassostrea virginica) and living shoreline habitats in Florida, U.S.A. Stable isotopes and gut contents were analyzed from young sportfish (i.e. predatory fish targeted by anglers) collected at control and restored sites for up to 3 years. The influence of habitat features, predator size, and prey availability on carbon and nitrogen isotope values were examined using a model species (mangrove/gray snapper [Lutjanus griseus]). In summary, sportfish species had distinct isotopic values, consuming similar prey but in different proportions between habitats. Prey abundance and richness, and reef height were influential predictors of L. griseus stable isotope values, with restored reefs contributing to their diet more than controls according to Bayesian mixing models. The trophic niche area of L. griseus and their predominant prey achieved trophic equivalence between restored and natural oyster reefs within 1 year following restoration. Stabilized living shorelines attained trophic equivalency to natural shorelines, but may take longer to accrue prey for some species. These findings generate fundamental ecological knowledge and actionable science, including targets, timelines, and indicator species, that natural resource managers and restoration practitioners can use to assess trophic structure and success of coastal habitat restoration.