Length – length relationships of 16 Caribbean elasmobranchs

Elasmobranchs are commonly landed without fins and heads; however, the knowledge of total length is necessary for fishery management. We provide useful equations to extrapolate partial from elasmobranch carcasses lengths, to total lengths. Length‐Length Relationships (LLR) are described for 16 commercial elasmobranch species all included in the IUCN Red List: Hexanchus nakamurai, Heptranchias perlo, Squalus cubensis, Squatina dumeril, Scyliorhinus boa, Mustelus minicanis, M. higmani, M. norrisi, Carcharhinus acronotus, C. falciformis, C. limbatus, Galeocerdo cuvier, Rhizoprionodon lalandii, R. porosus, Sphyrna lewini and Pseudobatos percellens. This study provide new LLR equations and rsepresent an improvement in the knowledge of these species.     

Lesser devil rays Mobula cf. hypostoma from Venezuela are almost twice their previously reported maximum size and may be a new sub‐species

Three rays opportunistically obtained near Margarita Island, Venezuela, were identified as lesser devil rays Mobula cf. hypostoma, but their disc widths were between 207 and 230 cm, which is almost double the reported maximum disc width of 120 cm for this species. These morphometric data suggest that lesser devil rays are either larger than previously recognized or that these specimens belong to an unknown sub‐species of Mobula in the Caribbean Sea. Better data are needed to describe the distribution, phenotypic variation and population structure of this poorly known species.     

Modelling post‐release survival of reintroduced Red‐billed Curassows Crax blumenbachii

Modelling post‐release survival probabilities of reintroduced birds can help inform ‘soft‐release’ strategies for avian reintroductions that use captive‐bred individuals. We used post‐release radiotelemetry data to estimate the survival probabilities of reintroduced captive‐bred Red‐billed Curassow Crax blumenbachii, a globally threatened Cracid endemic to the Brazilian Atlantic Rainforest. Between August 2006 and December 2008, 46 radiotagged Curassows from the Crax Brazil breeding centre were reintroduced to the Guapiaçu Ecological Reserve (REGUA), Rio de Janeiro state, Brazil, in seven different cohorts. Reintroduced birds were most vulnerable during the first 12 months post‐release from natural predation, domestic dogs and hunting. Annual post‐release survival probability was high (75%) compared with published estimates for other Galliform species. However, when considering survival in all birds transported to REGUA (some birds died before release or were retained in captivity) and not only post‐release survival, ? in this study was closer to estimates for other species (60%). The duration of the pre‐release acclimatization period within the soft‐release enclosure and the size of the released cohorts both positively influenced post‐release survival of reintroduced Curassows. Our results are relevant to future Cracid reintroductions and highlight the importance of utilizing post‐release monitoring data for evidence‐based improvements to soft‐release strategies that can significantly enhance the post‐release survival of captive‐bred birds.     

A review of the human activities impacting cetaceans in the eastern tropical Atlantic

• 1. The eastern tropical Atlantic (ETA), extending from Mauritania south to Angola, is inhabited by at least 34 cetacean species. Knowledge of cetaceans and the human activities affecting them in the ETA is scant.
• 2. Available literature was reviewed over three eras of ETA cetacean research: the whaling era (1700s–1950s); the stranding and specimen era (1950s–70s); and the modern field research era (1980s–present). Eight human activities were documented to impact ETA cetacean species: directed takes (whaling and small cetaceans); by‐catch or entanglement in fishing gear; the ETA tuna purse seine fishery; overfishing; habitat loss and degradation; vessel strikes; marine ecotourism; and live captures for display. Climate change may represent a future threat.
• 3. Directed takes of small cetaceans were documented in 12 ETA countries, and incidental by‐catch (especially in gillnets) in at least nine countries. Additionally, unknown levels of cetacean mortality occur in ETA tuna purse seine fisheries. The use of cetaceans as ‘bushmeat’ was documented in 15 countries and involved at least 23 species. Little information could be found on cetacean mortality in Liberia, Benin, Cameroon, Equatorial Guinea, São Tomé and Príncipe or the Democratic Republic of the Congo.
• 4. Human activities were most frequently and widely reported to impact on common bottlenose dolphins Tursiops truncatus and Atlantic humpback dolphins Sousa teuszii, which are particularly vulnerable to anthropogenic interactions due to their nearshore occurrence.
• 5. The lack of information on the scale of impacts and on cetacean abundance and population structure in the ETA currently hinders assessments of the sustainability of mortality levels.

     

Using life‐history information to assess potential effects of shrimp trawling on small fishes

The current study presents information on size distributions, size at recruitment to the fishery, size at maturity and patterns of reproduction for several small benthic fishes caught as by‐catch in the southern Gulf of California (Mexico) shrimp trawl fishery: sand perch Diplectrum spp., lumptail searobin Prionotus stephanophrys, bigscale goatfish Pseudupeneus grandisquamis and silver stardrum Stellifer illecebrosus. Pseudupeneus grandisquamis, P. stephanophrys and S. illecebrosus populations were all sexually dimorphic in size. Total‐length (L_T)‐based analyses did not provide reliable information on survival and growth. The majority of sampled P. grandisquamis and S. illecebrosus were caught before reproductive maturity, whereas the majority of Diplectrum spp. and almost all P. stephanophrys were mature when caught. L_T at 50% gear retention (L_Tc, mm) v. 50% maturity (L_Tm, mm): Diplectrum spp. 124·53 v. 131·43; P. grandisquamis 90·98 v. 135·20; S. illecebrosus 82·55 v. 137·30. L_Tc for P. stephanophrys was 104·73, but L_Tm could not be modelled for this species as almost all captured individuals were mature. Diplectrum spp., P. grandisquamis and S. illecebrosus were indeterminate spawners, whereas P. stephanophrys appeared to be a determinate spawner. Sex ratios were equal for each of the gonochoristic species. In general, the gonado‐somatic index (I_G) increased with increasing L_T for all except P. stephanophrys, where I_G decreased with increasing L_T for both males and females. Mature individuals of all taxa were found throughout the sampling period (September to March), and I_G increased with sample day for all except females of P. grandisquamis. The current data suggest the potential for fishery effects on sampled populations of P. grandisquamis and S. illecebrosus.     

Age and size at maturity: A quantitative review of diet‐induced reaction norms in insects

Optimality models predict that diet‐induced bivariate reaction norms for age and size at maturity can have diverse shapes, with the slope varying from negative to positive. To evaluate these predictions, we perform a quantitative review of relevant data, using a literature‐derived database of body sizes and development times for over 200 insect species. We show that bivariate reaction norms with a negative slope prevail in nearly all taxonomic and ecological categories of insects as well as in some other ectotherm taxa with comparable life histories (arachnids and amphibians). In insects, positive slopes are largely limited to species, which feed on discrete resource items, parasitoids in particular. By contrast, with virtually no meaningful exceptions, herbivorous and predatory insects display reaction norms with a negative slope. This is consistent with the idea that predictable resource depletion, a scenario selecting for positively sloped reaction norms, is not frequent for these insects. Another source of such selection—a positive correlation between resource levels and juvenile mortality rates—should similarly be rare among insects. Positive slopes can also be predicted by models which integrate life‐history evolution and population dynamics. As bottom‐up regulation is not common in most insect groups, such models may not be most appropriate for insects.     

A note on pseudo‐observations and left‐truncation

Pseudo‐observations have been introduced as a way to perform regression analysis of a mean value parameter related to a right‐censored time‐to‐event outcome, such as the survival probability or the restricted mean survival time. Since the introduction of the approach there have been several extensions from the original setting. However, the proper definition and performance of pseudo‐observations under left‐truncation has not yet been addressed. Here, we look at two types of pseudo‐observations under right‐censoring and left‐truncation. We explored their performance in a simulation study and applied them to data on diabetes patients with left‐truncation.     

Translocation of the Eastern Bristlebird 1: radio‐tracking of post‐release movements

Summary Translocating birds to a new area of habitat to restore or supplement depleted populations may pose a significant threat to the translocated individuals. While for many species, translocated individuals appear to move larger distances than resident animals, species with poor dispersal capacity may be restricted in movements and translocation methods may need to accommodate differences in movements to ensure success. In this study, designed to provide insights to inform our broader programme of translocations in New South Wales, Australia, we investigated post‐release movements in the endangered, semi‐flightless Eastern Bristlebird (Dasyornis brachypterus). We predicted that movements would be minimal, with few differences between males and females, similar to published information for a resident un‐manipulated population. Following the release of 45 birds at a host location at Jervis Bay, NSW, over a 3‐year programme, we followed individuals for up to 2 weeks using radio‐tracking. The translocated birds had larger maximum movements and moved through much larger home ranges than non‐translocated individuals from the resident population. Translocated birds moved 300 m further after release when conspecifics were present. Males moved further than females and tended to have larger home ranges, although average daily displacement did not differ. We concluded that the semi‐flightlessness of the species does not result in minimal movements. Release at a small number of locations in the new habitat was considered appropriate for the species, as animals seem to move enough to find new unoccupied areas in a relatively short period. This work provided us with increasing confidence to continue with further translocations.     

Role of social cognition in post‐traumatic stress disorder: A review and meta‐analysis

Social functioning is a key component of recovery after a potentially traumatic experience, and the buffering role of the social support in trauma resilience and recovery has been very well documented. Factors contributing to resilience and recovery are notable because although most people will experience a traumatic event during their lifetimes, only 6% to 10% are diagnosed with post‐traumatic stress disorder (PTSD). The relationship between an individual and their social environment is determined both by the quality of the social environment itself, and by the individual's perception and understanding of information conveyed by the other people around them. However, little research has considered the contribution of these internal social cognitive processes to PTSD risk or resilience. The current review draws on the existing literature on social cognitive functioning in trauma exposure and PTSD, identifying key questions and themes for future research. We utilized a meta‐analytic approach to assess the evidence for alterations in social cognition in PTSD, finding a consistent large deficit in social cognitive performance in PTSD groups relative to trauma‐exposed and healthy controls. We then reviewed the literature on the interaction of genes and the social environment, supporting the hypothesis that social cognitive deficits are a preexisting risk factor for PTSD. Finally, we reviewed relevant neuroimaging findings, which suggest that alterations in social cognition affect the perception of threat cues in PTSD. Overall, research on social cognition and PTSD is still emerging, but existing findings suggest this is an important and understudied area for the understanding of PTSD.     

New records of angular rough sharks Oxynotus centrina in the coastal waters of Malta,with observations on post‐capture resilience and release behaviour

One male and one female angular rough sharks Oxynotus centrina were caught south‐east of Malta between May and June at a depth of 60–100 m < 5 km from shore. The immature female (total length, L_T 565 mm) was landed dead but the male (535 mm L_T) was found alive. This communication presents important biological observations on post‐capture recovery and release behaviour of this species.     

Vulnerability to longline fisheries of three hammerhead shark Sphyrna species in the south‐western and equatorial Atlantic Ocean

Catch and effort data from 29 418 longline sets from Brazilian tuna longline vessels operating in the south‐western and equatorial Atlantic Ocean between 2004 and 2011 were analysed to investigate the distribution, catch rate and size of three species of hammerhead sharks (Sphyrna lewini, Sphyrna mokarran and Sphyrna zygaena). During that period, 6172 hammerhead sharks were caught. Among the elasmobranchs, the highest percentage of hammerhead sharks were caught in 2007, when they accounted for 3·90% of the group, while the lowest value of 0·40% was recorded in 2010. In general, the spatial distribution of the mean catch per unit effort (CPUE) by years and quarters showed a trend of higher catches near the equatorial region and in southern Brazil. The nominal mean CPUE was 0·12 Sphyrna spp. 1000⁻¹ hooks, with the highest value being recorded in 2007 (0·30 Sphyrna spp. 1000⁻¹ hooks). The standardized yearly CPUE estimated by a generalized linear model assuming a zero inflated negative binomial (ZINB) distribution were not much different from nominal values. Of the 205 sexed specimens, 117 were females and 88 were males, resulting in a sex ratio with a predominance of females (1·30:1·00), although not statistically significant. The total length of females ranged from 1200 to 2800 mm and of males from 1100 to 3100 mm. Juvenile hammerhead sharks represented 82 and 54% of the sexed female and male specimens, respectively.     

Behavioural responses of sardines Sardina pilchardus to simulated purse‐seine capture and slipping

The behavioural effects of confinement of sardine Sardina pilchardus in a purse seine were evaluated through three laboratory experiments simulating the final stages of purse seining; the process of slipping (deliberately allowing fishes to escape) and subsequent exposure to potential predators. Effects of holding time (the time S. pilchardus were held or entangled in the simulation apparatus) and S. pilchardus density were investigated. Experiment 1 compared the effect of a mild fishing stressor (20 min in the net and low S. pilchardus density) with a control (fishing not simulated) while the second and third experiments compared the mild stressor with a severe stressor (40 min in the net and high S. pilchardus density). In all cases, sea bass Dicentrarchus labrax were used as potential predators. Results indicated a significant effect of crowding time and density on the survival and behaviour of slipped S. pilchardus. After simulated fishing, S. pilchardus showed significant behavioural changes including lower swimming speed, closer approaches to predators and higher nearest‐neighbour distances (wider school area) than controls, regardless of stressor severity. These results suggest that, in addition to the delayed and unobserved mortality caused by factors related to fishing operations, slipped pelagic fishes can suffer behavioural impairments that may increase vulnerability to predation. Possible sub‐lethal effects of behavioural impairment on fitness are discussed, with suggestions on how stock assessment might be modified to account for both unobserved mortality and sub‐lethal effects, and possible approaches to provide better estimates of unobserved mortality in the field are provided.     

Some observations on the biology of two rarely seen deep‐sea chimaerids,Chimaera carophila and Hydrolagus homonycteris

Chimaera carophila (n = 45) and Hydrolagus homonycteris (n = 11), two deep‐sea chimaerids rarely caught in the waters off New Zealand, were collected from research trawl catches and commercial fishery catches around New Zealand at depths between 400 and 1300 m, between 2014 and 2016. Additional preserved specimens of both species (n = 58) from museum collections were analysed for size, sex and maturity. External assessment of male claspers and a combination of internal assessments of female gonad mass and oviducal gland width, were used to determine maturity. For both species, length at first maturity was 0·70–0·82 of their maximum observed chimaera length (L_C), with females maturing at a larger size. Length at maturity for C. carophila (L_C range: 28·7–103·9 cm) was estimated at 72·5 cm L_C for males (n = 163) and 82·5 L_C for females (n = 58). In H. homonycteris, length at maturity (length range: 78·6–99·8 cm L_C) was estimated at 79·1 cm L_C for males (n = 51) and 80·1 cm L_C for females (n = 17). Ovarian fecundity was up to 31 for C. carophila and sperm storage was confirmed in the oviducal gland of this species. Both species preyed on benthic invertebrates. Some C. carophila and H. homonycteris inhabit depths beyond most current fisheries, but both species appear to be relatively rare and have reproductive parameters characteristic of low productivity, which may make these species vulnerable to population decline if mortality was to increase in the future.     

A review of vital rates and cause‐specific mortality of elk Cervus elaphus populations in eastern North America

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Widespread evidence for incipient ecological speciation: a meta‐analysis of isolation‐by‐ecology

Ecologically mediated selection has increasingly become recognised as an important driver of speciation. The correlation between neutral genetic differentiation and environmental or phenotypic divergence among populations, to which we collectively refer to as isolation‐by‐ecology (IBE), is an indicator of ecological speciation. In a meta‐analysis framework, we determined the strength and commonality of IBE in nature. On the basis of 106 studies, we calculated a mean effect size of IBE with and without controlling for spatial autocorrelation among populations. Effect sizes were 0.34 (95% CI 0.24–0.42) and 0.26 (95% CI 0.13–0.37), respectively, indicating that an average of 5% of the neutral genetic differentiation among populations was explained purely by ecological contrast. Importantly, spatial autocorrelation reduced IBE correlations for environmental variables, but not for phenotypes. Through simulation, we showed how the influence of isolation‐by‐distance and spatial autocorrelation of ecological variables can result in false positives or underestimated correlations if not accounted for in the IBE model. Collectively, this meta‐analysis showed that ecologically induced genetic divergence is pervasive across time‐scales and taxa, and largely independent of the choice of molecular marker. We discuss the importance of these results in the context of adaptation and ecological speciation and suggest future research avenues.     

Apomorphine as an emetic for insectivorous songbirds: effectiveness and post‐release effects on survival and mass change

Emetics can be used to obtain food samples from birds, but they can harm birds during or after treatment. Studies to date suggest that apomorphine is a safe emetic for songbirds, but information is needed about possible post‐release deleterious effects. From March to July 2012, we collected food samples from insectivorous songbirds using apomorphine. We treated 67 Moustached Warblers (Acrocephalus melanopogon), 56 Reed Warblers (Acrocephalus scirpaceus), 15 Great Reed Warblers (Acrocephalus arundinaceus), and 12 Savi's Warblers (Locustella luscinoides). Effectiveness in inducing regurgitation was high (76.7%) and varied among species, being significantly more effective with Reed Warblers (91.1%). No birds died during treatment. To check for possible post‐release negative effects, we considered 53 treated Moustached Warblers and 37 treated Reed Warblers and selected an equal number of untreated individuals (simply captured, banded, and measured). We found no support for differences in survival or recapture probabilities between treated and untreated birds of either species within 21 d after administering apomorphine. We calculated body mass changes of all Moustached Warblers subsequently recaptured (within 21 d) and found no difference between treated (N = 8) and untreated (N = 22) birds, suggesting normal foraging activity after release. Our results suggest that apomorphine is a safe emetic, with no negative effect on survival at least in the short term. The effectiveness of apomorphine with insectivorous songbirds in our study contrasts with the results of some previous studies and confirms the differences in effectiveness among different taxa of songbirds. As with differences in effectiveness among species in our study, this variability in sensitivity to the emetic could be caused by morphological and physiological differences among different taxa.     

Evolution and functional cross‐talk of protein post‐translational modifications

Protein post‐translational modifications (PTMs) allow the cell to regulate protein activity and play a crucial role in the response to changes in external conditions or internal states. Advances in mass spectrometry now enable proteome wide characterization of PTMs and have revealed a broad functional role for a range of different types of modifications. Here we review advances in the study of the evolution and function of PTMs that were spurred by these technological improvements. We provide an overview of studies focusing on the origin and evolution of regulatory enzymes as well as the evolutionary dynamics of modification sites. Finally, we discuss different mechanisms of altering protein activity via post‐translational regulation and progress made in the large‐scale functional characterization of PTM function.     

Effects of angling on post‐release mortality,gonadal development and somatic condition of Australian bass Macquaria novemaculeata

This study assessed the protracted effects of two angling treatments (mild and harsh) on the post‐release mortality, gonadal development and somatic condition of Australian bass Macquaria novemaculeata in a pond‐based experiment. Angled fish were destructively sampled (along with controls) three times: immediately before, and 1 or 4 weeks after release into cages. Compared with the other groups, harshly angled fish had similar, low immediate and short‐term mortalities (≤5%), but significant delayed mortality (25%) and fed only minimally. None of these fish ejected ingested hooks. Forty‐six per cent of captive fish (across all groups) and 20% of wild fish had non‐ripening gonads (stage I) prior to, or during, the experiment. In females with ripening ovaries (stages II or III), neither angling treatment significantly reduced standardized gonadal mass. The mean per cent of atretic oocytes increased among females in all groups, but was significantly greater in those that were harshly angled. The results demonstrated that the gonadal development of M. novemaculeata could be suppressed or impaired (by angling, handling and confinement), and that further research is warranted. In particular, the timing and severity of angling in relation to the stage of gonadal development could have important implications for the introduction of temporal restrictions to angling.