Latitudinal differentiation in the effects of the toxic dinoflagellate Alexandrium spp. on the feeding and reproduction of populations of the copepod Acartia hudsonica

Blooms of the dinoflagellate Alexandrium spp. increase in their frequency, toxicity and historical presence with increasing latitude from New Jersey (USA) to the Gaspé peninsula (Canada). Biogeographic variation in these blooms results in differential exposure of geographically separate copepod populations to toxic Alexandrium. We hypothesize that the ability of copepods to feed and reproduce on toxic Alexandrium should be higher in copepods from regions that are frequently exposed to toxic Alexandrium blooms. We tested this hypothesis with factorial common environment experiments in which female adults of the copepod Acartia hudsonica from five separate populations ranging from New Jersey to New Brunswick were fed toxic and non-toxic strains of Alexandrium, and the non-toxic flagellate Tetraselmis sp. Consistent with the hypothesis, when fed toxic Alexandrium we observed significantly higher ingestion and egg production rates in the copepods historically exposed to toxic Alexandrium blooms relative to copepods from regions in which Alexandrium is rare or absent. Such differences among copepod populations were not observed when copepods were fed non-toxic Alexandrium or Tetraselmis sp. These results were also supported by assays in which copepods from populations both historically exposed and naïve to toxic Alexandrium blooms were fed mixtures of toxic Alexandrium and Tetraselmis sp. Two-week long experiments demonstrated that when copepods from populations naïve to toxic Alexandrium were fed a toxic strain of Alexandrium they failed to acclimate, such that their ingestion rates remained low throughout the entire two-week period. The differences observed among populations suggest that local adaptation of populations of A. hudsonica from Massachusetts (USA) to New Brunswick (Canada) has occurred, such that some populations are resistant to toxic Alexandrium.     

Survey of soil fungi from the Sudan Gezira

One hundred and twenty sites, from six localities from the Sudan Gezira were examined for soil mycoflora. The lower fungi were mostly represented by mucoraceous genera, such as Rhizopus, Mucor and Cunninghamella. Oomycetes were rare. Ascomycetes, other than the perfect states of Aspergillus, were not common. Only Chaetomium globosum was isolated from the six localities. Monascus, Thermoascus, Neocosmospora and Pyronema were recorded for the first time from Sudanese soils. The majority of the isolates were Hyphomycetes. The bulk of the fungal population were species of Aspergillus, of which A. niger was the most common, followed by A. terreus, A. flavus, A. nidulans and A. fumigatus. Other Aspergilli were sporadic. A. niveus and A. sejunctus were not previously reported from Sudanese soil.     

Interference of Seasonal Variation on the Antimicrobial and Cytotoxic Activities of the Essential Oils from the Leaves of Iryanthera polyneura in the Amazon Rain Forest

The essential oils (EOs) obtained from the leaves of Iryanthera polyneura Ducke trees was chemically Assessed and tested for the ability of inhibiting the growth of Candida albicans, Enterococcus faecalis, Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus, Streptococcus mutans and S. sanguinis. The oil was also tested against breast (MCF‐7) and prostate (PC‐3) cancer cell lines. Minimum bactericidal concentrations (MBCs) and 50 % inhibition concentrations (IC₅₀) values were obtained. EOs were active against Gram‐positive bacteria. Spathulenol, α‐cadinol and τ‐muurolol were major components of EOs. The oils showed a higher cytotoxicity against PC‐3 than MCF‐7 cells, although the oils were active against both cell types. Oils obtained from leaves collected in the dry season were more active against E. faecalis, S. aureus and PC‐3, while the oils obtained from leaves collected in the rainy season were more active against S. mutans, S. sanguinis and MCF‐7. The antibacterial and cytotoxic activities of the essential oils from the leaves of I. polyneura are related to the seasonal climate variation and are influenced by compounds that are minor components of the oils.     

Animal associations with the dominant species of shallow water macrophytes along the coastline of the Vestfold Hills,Antarctica

Benthic grab samples, taken through core holes in sea-ice 1983, returned eight species of marine macrophytes which had associated fauna on at least one sample. A total of 24 animal taxa were found on these eight macrophytes. Phyllophora antarctica had a significantly greater biomass of attached fauna per unit of macrophyte biomass than any of the other seven species. It also had the greatest variety of epiphytic fauna (21 taxa). Phyllophora antarctica was the only macrophyte collected from comparatively protected Ellis Fjord, apart from filamentous algae, including Cladophora subsimplex and Geminocarpus austrogeorgiae, which were found in the most landward basin. It therefore played an important role in the ecology of the fjord. Palmaria decipiens was commonly collected at more exposed coastal sites and was dominant in Long Fjord, characterized here as intermediate in terms of water movement. Sixteen animal taxa were collected from this macrophyte with the greatest numbers being found in July and August. Only four animal taxa were collected from Iridaea cordata. The other five macrophyte species from which epiphytic animals were collected (Porphyra endiviifolium, Plocamium cartilagineum, Desmarestia menziesii, Himantothallus grandifolius and Cladophora subsimplex had animals associated with them on less than half the occasions when they were found.     

Screening of bacteria of the genus Bacillus for the control of the plant-pathogenic fungus Macrophomina phaseolina

This study evaluated the efficiency of 19 Bacillus isolates, obtained from the rhizosphere and rhizoplane of wild and cultivated castor bean plants, to control the pathogenic fungus Macrophomina phaseolina. Using in vitro assays, we examined the antifungal effects of volatile and non-volatile compounds, the production of siderophores and the activity of chitinase in these isolates. In vivo experiments were conducted to determine the potential of the Bacillus isolates to colonise castor bean plant roots and to control the fungus. In general, results showed that isolates from wild castor bean, compared with isolates from cultivated castor bean, were more efficient producers of antifungal compounds, better colonisers of plant roots and more effective protectors of plant seedlings against infection with M. phaseolina. Altogether, isolate RP 5, originating from the rhizoplane of wild castor bean, was the most promising candidate for future evaluation as a biological control agent of M. phaseolina.     

Seasonal study of the fungal biota of the fur of dogs

During a one year period, 944 dogs from the Municipal kennel of Barcelona were examined to detect animals with suspected dermatophytosis. Only a few animals (1.8%) presented skin lesions but none of them had dermatophytosis. A representative number of dogs without visible skin lesions (n=172), selected at random, were used to carry out a seasonal study of the mycobiota of their fur. Fifteen isolates belonging to the genera Microsporum and Trichophyton were isolated from 14 of the 172 (8.1%) dogs without lesions. The identity of these fungi was Microsporum gypseum (6/15), Trichophyton terrestre (4/15), M. canis (2/15), M. cookei (2/15) and Trichophyton ajelloi (1/15) (one strain each of M. gypseum and T. ajelloi were isolated from one dog). Species of Penicillium (% prevalence=89.5%), Alternaria (86.6%), Cladosporium (84.9%), Aspergillus (77.3%), Scopulariopsis (65.7%) and Chrysosporium (64.5%) were the most prevalent. No significant differences in the fungal biota were observed with respect to age, gender, hair length or between mixed and pure breed dogs. A large number of isolates, including species belonging to the genera Beauveria, Chrysosporium, Malbranchea and Scopulariopsis, that macroscopically and/or microscopically resemble dermatophytes and may be mistaken for them, produced a red color change in Dermatophyte Test Medium. No significant seasonal difference was detected among the isolates belonging to the the most frequently encountered genera, with the exception of Scopulariopsis (higher in summer and autumn) and Chrysosporium (higher in summer). Species from other genera, with lower occurrence also presented significant differences in their seasonal distribution. Arthrinium, Aureobasidium, Chaetomium and Phoma spp. presented maximum prevalence peaks in spring, Fusarium, Paecilomyces, Phoma and Rhizopus spp. in summer and Geotrichum and Mucor spp. in autumn. The Microsporum and Trichophyton species were more frequently isolated in summer.     

On the reliability of the growth rings in two species of the family Characidae in the Sudan

The scales, opercula and vertebrae from 69 Hydrocyon forskali and 63 Alestes dentex were investigated for their reliability as aging structures. In both species the scales were unreliable due to their regenerative property, in spite of the clarity of their growth rings.Back-calculated lengths from the first growth ring laid on opercula and vertebrae resulted in values that coincided with the annual growth of the two species. In H. forskali, the mean back-calculated length from the two bones were 16.2 ± 5.9 and 16.8 ± 4.4 respectively, and for A. dentex, 11.1 ± 1.7 and 12.8 ± 1.8, respectively.Predictive equations for bone radius from fish length were written for both species. In this study, reliability was maximal between the observed and back-calculated lengths for both species (r > 0.95).     

Impact of the Maize Rhizosphere on the Genetic Structure, the Diversity and the Atrazine-degrading Gene Composition of Cultivable Atrazine-degrading Communities

Sixty-six atrazine-degrading bacterial communities utilizing atrazine as sole N source and citrate as principal C source were isolated from unplanted and maize planted soils treated with atrazine. Ribosomal intergenic spacer analysis (RISA) fingerprints revealed that the genetic structure of atrazine-degrading bacterial communities was modified in the maize rhizosphere. To assess the underlying microbial diversity, 16S rDNA sequences amplified from each bacterial community were cloned. Libraries containing 660 16S rDNA clones were screened by restriction fragment length polymorphism (RFLP) analysis. In all, 63 clone families were identified. Rarefaction curves did not reach a clear saturation, indicating that the analysis of a greater number of clones would have revealed further diversity. Recovered 16S rDNA sequences were related to Actinobacteria, Bacteroidetes and Proteobacteria. The four dominant RFLP families were highly similar to Variovorax paradoxus, Burkholderia cepacia, Arthrobacter sp. and Bosea sp. The composition of most of the atrazine-degrading bacterial communities consisted of 2–7 different bacterial species. Various atrazine-degrading gene compositions were observed, two of these atzABCDEF, trzND and atzBCDEF, trzN being largely dominant. The first was more frequently detected in bacterial communities isolated from the maize rhizosphere whereas the second was more frequently detected in communities isolated from bulk soil. Monitoring of atrazine-degrading activity showed that 76% of the bacterial communities degraded up to 80% of the initially added atrazine within 15 days of culture. Altogether our results indicate that the maize rhizosphere has an impact on the genetic structure, the diversity and atrazine-degrading gene composition of the atrazine-degrading communities.     

Frequency of occurrence of mangrove fungi from the east coast of India

This paper describes the frequency of occurrence and biodiversity of fungi from mangroves of the Godavari and Krishna deltas, on the east coast of India. Seventy three species were identified from Godavari and 67 from the Krishna mangroves. Fifty five species were common to both sites, 18 were found only at Godavari and 12 at Krishna mangroves. Verruculina enaliawas found to be very frequent at both sites with a higher frequency of occurrence at Godavari. Eutypa bathurstensis was very frequent at Godavari but only frequent at Krishna. Cirrenalia pygmea and Cryptosphaeria mangrovei were frequent at the Godavari mangrove, but were recorded occasionally at Krishna. Decaying samples of Rhizophora and Avicennia were studied in detail. Forty three species were common to both hosts, while 22 species were recorded only from Avicennia and 20 only from Rhizophora. Verruculina enalia was the only very frequent fungus recorded on both hosts with a lower percentage occurrence (14.8%) on R. apiculata as compared to Avicennia spp. (24.3%). Eutypa bathurstensis was the next most frequent fungus on Avicennia, while Rhizophila marina was next most frequent on Rhizophora. Dactylospora haliotrepha which was recorded frequently on Rhizophorawas infrequent on Avicennia.     

Evaluation of the antigen from chlamydospores of Candida albicans in the serodiagnosis of candidiasis

Antigens have been prepared from the chlamydospores and blastospores of Candida albicans and their precipitin patterns were analysed by two-dimensional immunoelectrophoresis using specific antisera.The two antigens were used in routine serological tests of patients suffering from candidiasis. On double-diffusion tests for the detection of circulating antibodies of Candida albicans, the antigen from chlamydospores displays precipitin lines that differ in number and intensity from those obtained with the antigen from blastospores. The results are briefly discussed in the framework of C. albicans antigen standardization.     

Metazoan parasites of Neogobius fishes in the Slovak section of the River Danube

Metazoan parasites were investigated in three non‐native fishes (monkey goby Neogobius fluviatilis, bighead goby Neogobius kessleri and round goby Neogobius melanostomus) collected from the former and current main channel of the River Danube and from the River Hron, Slovakia, in November 2003. Thirteen parasite species were identified: Triaenophorus crassus, Diplostomum sp., Tylodelphys clavata, Metorchis xanthosomus, Nicolla skrjabini, Gyrodactylus proterorhini, Pomphorhynchus laevis, Contracoecum sp., Raphidascaris acus, Anguillicola crassus, Unio tumidus, Anodonta anatina and Pseudoanodonta complanata. The maximum parasite diversity was found in N. fluviatilis. Total parasite abundance was significantly higher in N. kessleri, but no significant differences among sampling sites were observed. Pomphorhynchus laevis and glochidia of Anodonta anatina reached 100% prevalence in N. kessleri in the new channel of the Danube and, in general, these species were also the most prevalent parasites in all three goby species. For endoparasites, gobies served mostly as intermediate (digenean, cestodes and nematodes) or paratenic (acantocephalan and nematodes) hosts. All parasite species found are common parasites in the Middle Danube basin. No parasites specific to Neogobius, known from their native populations, were observed.     

Selective isolation and characterisation of members of the Streptomyces violaceusniger clade associated with the roots of Paraserianthes falcataria

Large numbers of putatively novel streptomycetes were isolated from environmental samples collected from in and around the root system of the tropical angiosperm, Paraserianthes falcataria. Representative isolates were assigned to 37 multi-membered and 107 single membered colour groups based on their ability to form pigments on oatmeal and peptone yeast extract iron agars. The largest taxon, colour group 3, encompassed 94 isolates which had morphological properties typical of members of the Streptomyces violaceusniger clade. Twelve representatives of this taxon chosen on the basis of Curie-point pyrolysis mass spectrometric data were compared with representatives of the validly described species which constitute the Streptomyces violaceusniger clade. Six out of the twelve representative strains were readily distinguished from one another and from the marker strains using a combination of genotypic and phenotypic properties. These organisms were consequently considered to merit species status as Streptomyces asiaticus sp. nov., Streptomyces cangkringensis sp. nov., Streptomyces indonesiensis sp. nov., Streptomyces javensis sp. nov., Streptomyces rhizosphaerius sp. nov. and Streptomyces yogyakartensis sp. nov.     

Valorization of the Green Waste from Two Varieties of Fennel and Carrot Cultivated in Tunisia by Identification of the Phytochemical Profile and Evaluation of the Antimicrobial Activities of Their Essentials Oils

The purpose of this study was to identify the chemical composition and the antibacterial activity of the essential oils (EOs) extracted from the green tops of Daucus carota L. subsp. sativus (Hoffm .) Arcang. plants producing yellow roots (DcsYR) and those producing orange roots (DcsOR) and from two varieties of Foeniculum vulgare subsp. vulgare cultivated in Tunisia. Analyses revealed that the EOs from the two D. carota varieties were rich in constituents belonging to sesquiterpenes. Phenylpropanoids and non‐terpene derivatives were the most abundant classes of compounds in the EOs from the two varieties of F. vulgare, of which compositions were predominated by (E)‐anethole and p‐acetonylanisole. All the tested EOs were significantly more effective against Gram‐negative bacteria, and that obtained from var. azoricum was more active against the yeast Candida albicans than the reference drug. The EOs obtained from these by‐products showed indeed interesting potential to be promoted as natural antimicrobials in food preservation systems, as well as the possibility to be used in flavor industries.     

Species-specific proteins of the 50S subunit of the chloroplast ribosome in the genus Nicotiana

Summary The large subunits (50S) of chloroplast ribosomes were isolated from Nicotiana tabacum, a species of the Western Hemisphere, and from N. excelsior and N. gossei, Australian species. Their proteins were compared by two-dimensional gel electrophoresis. A pair of proteins (T₁₂ and T₁₂) observed in N. tabacum has electrophoretic mobilities which differ from those of a similarly migrating, and probably homologous, pair of proteins observed in N. excelsior and N. gossei. The species-specific proteins in N. tabacum differ slightly in electrophoretic mobilities based on both charge and molecular weight from those in N. excelsior and N. gossei. Tryptic digests of radioiodinated proteins reveal that the peptide maps of all six proteins are similar. These results suggest that chemically altered forms of one or more proteins of the 50S chloroplast ribosome subunit may exist in vivo.     

Microbiota of the Orchid Rhizoplane

Six bacterial strains isolated from the underground roots of the terrestrial orchid Calanthe vestitavar. rubro-oculatawere found to belong to the genera Arthrobacter, Bacillus, Mycobacterium, and Pseudomonas.Strains isolated from the aerial roots of the epiphytic orchid Dendrobium moschatumwere classified into the genera Bacillus, Curtobacterium, Flavobacterium, Nocardia, Pseudomonas, Rhodococcus, and Xanthomonas.The rhizoplane of the terrestrial orchid was also populated by cyanobacteria of the genera Nostocand Oscillatoria, whereas that of the epiphytic orchid was populated by one genus, Nostoc.In orchids occupying different econiches, the spectra of the bacterial genera revealed differed. The microbial complex of the terrestrial orchid rhizoplane differed from that of the surrounding soil.     

Deoxyribonucleic acid homology among the species of the genus Bifidobacterium isolated from animals

Summary Representatives of the species of the genus Bifidobacterium isolated from bovine rumen, intestinal content of honey bees and pig feces were studied for their deoxyribonucleic acid similarities with DNA-DNA filter hybridization-competition experiments. The species were: B. asteroides, B. indicum and B. coryneforme from honey bees; B. ruminale and B. globosum from rumen; B. suis from pig feces; Mitsuoka's species B. thermophilum and B. pseudolongum. Strains of B. bifidum, B. infantis, B. longum and B. breve from human sources were included in some comparative experiments. The group of bacteria investigated is largely heterogeneous: virtually no homology exists among the species from rumen and pig feces; the species or types from bees, although unrelated with rumen and pig types, share with these a significant portion of the genome; the competitor DNA's from human strains did not at all react with any of the homologous systems. The annealing reaction was carried out under stringent conditions to ensure against mismatching of nucleotide sequences (70°C in Denhardt's reactive mixture). The separation within the genus Bifidobacterium of several specific entities is fully substantiated.This investigation was supported by a research grant of C. N. R. (Consiglio Nazionale delle Ricerche, Roma).     

Microorganisms associated with the retting of flax treated with the herbicide glyphosate

Greater numbers of fungi were isolated from stems of flax following treatment with the herbicide glyphosate than from untreated stems although there was also a general increase in numbers with time. The fungal genera isolated were the same from both treated and untreated plants, the most common being Cladosporium, Aureobasidium, Epicoccum and Botrytis with Cladosporium being predominant. Populations of bacteria were generally not enhanced after glyphosate treatment. Partial dew-retting of crops resulted in the reduction in numbers of Cladosporium compared with conventionally-treated flax. The increase in numbers of fungi was associated with an increase in retting. Overretting also occurred, particularly in discrete pale areas on the stem. These were associated with colonisation by Botrytis cinerea and the tensile strength of fibres from these areas was 15 times weaker than from surrounding darker areas of the stem. Light microscopy showed death of cells after glyphosate application, followed by invasion and degradation of the epidermis and cortex by fungi and other microorganisms. Fibre bundles were partially dissociated but the individual fibres remained largely intact as did the xylem and medulla.     

Identification of Volicitin-related Compounds from the Regurgitant of Lepidopteran Caterpillars

Volicitin-related compounds were found in the oral secretion of the three noctuid species, Helicoverpa armigera, Mythimna separata and Spodoptera litura, and one sphingid species, Agrius convolvuli. Volicitin [N-(17-hydroxylinolenoyl)-L-glutamine], N-(17-hydroxy-linoleoyl)-glutamine, N-linolenoylglutamine and N-linoleoylglutamine were identified in the secretion from the noctuid larvae. In secretions from the sphingid larvae, N-linolenoylglutamine and N-linoleoylglutamine were the main components. Furthermore, there were significant differences in the amounts of the N-acylamino acid conjugates in the secretions from the three noctuid species. These results suggest that the proportion of volicitin-related compounds in the regurgitant was species-specific.     

Sedimentation-equilibrium studies of the polysaccharide components of Pseudomonas aeruginosa

Mild acid hydrolysis of lipopolysaccharide antigens from seven different serotype strains antigen immunotypes nos. 1–7 [in the classification of Fisher, M. W., Devlin, H. B. & Gnabasik, F. J. (1969) J. Bacteriol. 98 , 835–836] of Pseudomonas aeruginosa gave polysaccharide components of high molecular weight, which were isolated by gel filtration and dialysis. These components were examined by ultracentrifugation at equilibrium with the Rayleigh interferometric optical system. The partial specific volumes were calculated from densities obtained by using a mechanical oscillator. The average molecular weights (M _n, M _w, and M _z) were calculated and compared to evaluate the polydispersity of the polysaccharides. The nonideality was investigated by varying the rotor speed, the height of the solution column, and the concentrations of the polysaccharide fractions. The molar masses were found to range from 14,000 for the polysaccharide from immunotype two to 24,000 for that from immunotype one, when extrapolated to zero rotor speed and solution column height.     

Quinolone-resistant mutations of the gyrA gene of Escherichia coli

Summary DNA fragments of 8.5 kb containing the gyrA gene were cloned from Escherichia coli KL-16 and from four spontaneous gyrA mutants which showed various levels of resistance to quinolones. The gyrA gene was situated at about 4 kb in front of the nrdA gene and transcribed counterclockwise on the E. coli chromosome. It encoded a polypeptide of 875 amino acids with a molecular weight of about 97000. The four gyrA mutations were located strikingly close to one another within a small region near the N-terminus of the gyrA polypeptide, i.e., nucleotide changes from C to T, from C to G, from G to T and from G to T at nucleotides 248, 248, 318 and 199, respectively, resulting in amino acid changes from Ser to Leu, from Ser to Trp, from Gln to His and from Ala to Ser at amino acids 83, 83, 106 and 67, respectively. These mutations were situated in the relatively hydrophilic regions of the GyrA polypeptide and close to Tyr at amino acid 122 which has been shown to be the site covalently bound to DNA.