Soil fertility shapes belowground food webs across a regional climate gradient

Changes in soil fertility during pedogenesis affect the quantity and quality of resources entering the belowground subsystem. Climate governs pedogenesis, yet how climate modulates responses of soil food webs to soil ageing remains unexplored because of the paucity of appropriate model systems. We characterised soil food webs along each of four retrogressive soil chronosequences situated across a strong regional climate gradient to show that belowground communities are predominantly shaped by changes in fertility rather than climate. Basal consumers showed hump‐shaped responses to soil ageing, which were propagated to higher‐order consumers. There was a shift in dominance from bacterial to fungal energy channels with increasing soil age, while the root energy channel was most important in intermediate‐aged soils. Our study highlights the overarching importance of soil fertility in regulating soil food webs, and indicates that belowground food webs will respond more strongly to shifts in soil resources than climate change.     

A model for nectar secretion in animal-pollinated plants

Summary A game theoretic model was developed for nectar secretion in animal-pollinated plants in order to examine how the total amount of resources allocated to flowers affects the spread of nectarless plants. It was assumed that pollinators concentrate on patches whose nectar rewards are relatively large compared to other patches and if pollinators visit a patch, they concentrate on the plants whose nectar rewards are relatively large compared to other plants in the patch. It was shown that plants are more likely to secrete nectar in populations where the total amount of resources allocated to flowers is large. It was also shown that strong interplant competition, strong interpatch competition and the nectar discrimination of the pollinators are also important factors for nectar secretion. However, if the total amount of resources allocated to flowers is sufficiently large, plants would secrete nectar even if competition is not very strong and nectar discrimination is not so precise.     

Classification and Use of Natural and Anthropogenic Soils by Indigenous Communities of the Upper Amazon Region of Colombia

Outsiders often oversimplify Amazon soil use by assuming that abundantly available natural soils are poorly suited to agriculture and that sporadic anthropogenic soils are agriculturally productive. Local perceptions about the potentials and limitations of soils probably differ, but information on these perceptions is scarce. We therefore examined how four indigenous communities in the Middle Caquetá River region in the Colombian Amazon classify and use natural and anthropogenic soils. The study was framed in ethnopedology: local classifications, preferences, rankings, and soil uses were recorded through interviews and field observations. These communities recognized nine soils varying in suitability for agriculture. They identified anthropogenic soils as most suitable for agriculture, but only one group used them predominantly for their swiddens. As these communities did not perceive soil nutrient status as limiting, they did not base crop-site selection on soil fertility or on the interplay between soil quality and performance of manioc genetic resources.     

Winning and losing with microbes: how microbially mediated fitness differences influence plant diversity

Interactions between plants and soil microbes can strongly influence plant diversity and community dynamics. Soil microbes may promote plant diversity by driving negative frequency‐dependent plant population dynamics, or may favor species exclusion by providing one species an average fitness advantage over others. However, past empirical research has focused overwhelmingly on the consequences of frequency‐dependent feedbacks for plant species coexistence and has generally neglected the consequences of microbially mediated average fitness differences. Here we use theory to develop metrics that quantify microbially mediated plant fitness differences, and show that accounting for these effects can profoundly change our understanding of how microbes influence plant diversity. We show that soil microbes can generate fitness differences that favour plant species exclusion when they disproportionately harm (or favour) one plant species over another, but these fitness differences may also favor coexistence if they trade off with competition for other resources or generate intransitive dominance hierarchies among plants. We also show how the metrics we present can quantify microbially mediated fitness differences in empirical studies, and explore how microbial control over coexistence varies along productivity gradients. In all, our analysis provides a more complete theoretical foundation for understanding how plant–microbe interactions influence plant diversity.     

Stoichiometric homeostasis in response to variable water and nutrient supply in a Robinia pseudoacacia plant–soil system

刺槐植物-土壤系统生态化学计量内稳性对水分和养分变异的响应特征 所有生物体都需要一定比例的元素来维持正常的生理代谢过程,它们的可塑性取决于它们利用外部资源的效率。阐明不同资源供应水平下植物、土壤和土壤微生物生物量生态化学计量特征之间的相互作用非常重要。本研究以一年生刺槐(Robinia pseudoacacia)幼苗为研究对象,测定不同水平水分、氮素和磷素处理下刺槐叶片、细根、土壤和微生物生物量C、N、P含量及其化学计量学指标。结果表明,刺槐叶片、细根、土壤和微生物生物量C、N、P含量及其化学计量特征会对其生存环境水分和养分条件的变化表现出一定程度的可塑性;方差分解分析结果表明,细根计量比解释了微生物生物量计量比方差的很大一部分;结构方程模型进一步揭示了细根计量比和叶片计量比是影响土壤微生物生物量C:N和C:P 的两个直接因素,而细根计量比具有较大的直接作用。此外,内稳性特征分析表明土壤微生物生物量C 和C:P对土壤养分变化较为敏感,其他指标均具有内稳性。这些结果明确了土壤微生物生物量化学计量的重要性,提高我们对不同生境水分和养分供应水平下植物-土壤系统养分循环机理的认识。     

Phylogeny for the faint of heart: a tutorial

Phylogenetic trees seem to be finding ever broader applications, and researchers from very different backgrounds are becoming interested in what they might have to say. This tutorial aims to introduce the basics of building and interpreting phylogenetic trees. It is intended for those wanting to understand better what they are looking at when they look at someone else's trees or to begin learning how to build their own. Topics covered include: how to read a tree, assembling a dataset, multiple sequence alignment (how it works and when it does not), phylogenetic methods, bootstrap analysis and long-branch artefacts, and software and resources.     

Fungal genome size and composition reflect ecological strategies along soil fertility gradients

Genomic traits reflect the evolutionary processes that have led to ecological variation among extant organisms, including variation in how they acquire and use resources. Soil fungi have diverse nutritional strategies and exhibit extensive variation in fitness along resource gradients. We tested for trade-offs in genomic traits with mycelial nutritional traits and hypothesize that such trade-offs differ among fungal guilds as they reflect contrasting resource exploitation and habitat preferences. We found species with large genomes exhibited nutrient-poor mycelium and low GC content. These patterns were observed across fungal guilds but with varying explanatory power. We then matched trait data to fungal species observed in 463 Australian grassland, woodland and forest soil samples. Fungi with large genomes and lower GC content dominated in nutrient-poor soils, associated with shifts in guild composition and with species turnover within guilds. These findings highlight fundamental mechanisms that underpin successful ecological strategies for soil fungi.     

The importance of distance to resources in the spatial modelling of bat foraging habitat

Many bats are threatened by habitat loss, but opportunities to manage their habitats are now increasing. Success of management depends greatly on the capacity to determine where and how interventions should take place, so models predicting how animals use landscapes are important to plan them. Bats are quite distinctive in the way they use space for foraging because (i) most are colonial central-place foragers and (ii) exploit scattered and distant resources, although this increases flying costs. To evaluate how important distances to resources are in modelling foraging bat habitat suitability, we radio-tracked two cave-dwelling species of conservation concern (Rhinolophus mehelyi and Miniopterus schreibersii) in a Mediterranean landscape. Habitat and distance variables were evaluated using logistic regression modelling. Distance variables greatly increased the performance of models, and distance to roost and to drinking water could alone explain 86 and 73% of the use of space by M. schreibersii and R. mehelyi, respectively. Land-cover and soil productivity also provided a significant contribution to the final models. Habitat suitability maps generated by models with and without distance variables differed substantially, confirming the shortcomings of maps generated without distance variables. Indeed, areas shown as highly suitable in maps generated without distance variables proved poorly suitable when distance variables were also considered. We concluded that distances to resources are determinant in the way bats forage across the landscape, and that using distance variables substantially improves the accuracy of suitability maps generated with spatially explicit models. Consequently, modelling with these variables is important to guide habitat management in bats and similarly mobile animals, particularly if they are central-place foragers or depend on spatially scarce resources.     

Inclusive fitness in agriculture

Trade-offs between individual fitness and the collective performance of crop and below-ground symbiont communities are common in agriculture. Plant competitiveness for light and soil resources is key to individual fitness, but higher investments in stems and roots by a plant community to compete for those resources ultimately reduce crop yields. Similarly, rhizobia and mycorrhizal fungi may increase their individual fitness by diverting resources to their own reproduction, even if they could have benefited collectively by providing their shared crop host with more nitrogen and phosphorus, respectively. Past selection for inclusive fitness (benefits to others, weighted by their relatedness) is unlikely to have favoured community performance over individual fitness. The limited evidence for kin recognition in plants and microbes changes this conclusion only slightly. We therefore argue that there is still ample opportunity for human-imposed selection to improve cooperation among crop plants and their symbionts so that they use limited resources more efficiently. This evolutionarily informed approach will require a better understanding of how interactions among crops, and interactions with their symbionts, affected their inclusive fitness in the past and what that implies for current interactions.     

Thoughts on the processes that maintain local species diversity of ectomycorrhizal fungi

Ectomycorrhizal fungi exhibit high diversity even in small monoculture forests. Roughly 20 to 35 species typically occupy such sites. Explanations for this diversity can be based on resource partitioning, disturbance, competition, or interaction with other organisms. Mycorrhizal fungi compete for two general classes of resources: host-derived carbon and soil or detritus derived mineral nutrients. Both types of resources are arrayed in space (e.g., soil depth, distance from tree) and time (e.g., season, host successional series). Some species seem to be partitioned in space and time at these scales, but the question of how widespread these patterns are remains largely unanswered. Mineral resources are distributed in discrete substrates in soil, litter, and within other soil microorganisms; the biochemical diversity exhibited by fungi may translate into differences in access to these resources among species. Small-scale natural disturbances that sever roots, mix soil horizons and litter layers, or change local pH and nutrient availability, are likely to create additional habitats for ectomycorrhizal fungi. Evidence from fruiting patterns and differences in colonization strategies suggest that such disturbances may be important for establishment of some species. Competitive replacement networks among species have the theoretical potential to increase diversity. The frequency of species replacements, observed co-infections of ectomycorrhizal fungi on single host roots, and high rates of rootlet turn-over all suggest that competition is important, but whether it plays a creative role in maintaining diversity remains to be demonstrated. Other organisms could be important in the maintenance of diversity, if they effect competition among mycorrhizal fungi. Bacteria and soil invertebrates are the most likely groups for such interactions. Technological advances in root observation and PCR methods for indentification of mycorrhizae make many of these theories testable.     

Positive responses of coastal dune plants to soil conditioning by the invasive Lupinus nootkatensis

Invasive nitrogen-fixing plants drive vegetation dynamics and may cause irreversible changes in nutrient-limited ecosystems through increased soil resources. We studied how soil conditioning by the invasive alien Lupinus nootkatensis affected the seedling growth of co-occurring native plant species in coastal dunes, and whether responses to lupin-conditioned soil could be explained by fertilisation effects interacting with specific ecological strategies of the native dune species. Seedling performance of dune species was compared in a greenhouse experiment using field-collected soil from within or outside coastal lupin stands. In associated experiments, we quantified the response to nutrient supply of each species and tested how addition of specific nutrients affected growth of the native grass Festuca arundinacea in control and lupin-conditioned soil. We found that lupin-conditioned soil increased seedling biomass in 30 out of 32 native species; the conditioned soil also had a positive effect on seedling biomass of the invasive lupin itself. Increased phosphorus mobilisation by lupins was the major factor driving these positive seedling responses, based both on growth responses to addition of specific elements and analyses of plant available soil nutrients. There were large differences in growth responses to lupin-conditioned soil among species, but they were unrelated to selected autecological indicators or plant strategies. We conclude that Lupinus nootkatensis removes the phosphorus limitation for growth of native plants in coastal dunes, and that it increases cycling of other nutrients, promoting the growth of its own seedlings and a wide range of dune species. Finally, our study indicates that there are no negative soil legacies that prevent re-establishment of native plant species after removal of lupins.     

A resource-sharing model based on a repeated game in fog computing

With the rapid development of cloud computing techniques, the number of users is undergoing exponential growth. It is difficult for traditional data centers to perform many tasks in real time because of the limited bandwidth of resources. The concept of fog computing is proposed to support traditional cloud computing and to provide cloud services. In fog computing, the resource pool is composed of sporadic distributed resources that are more flexible and movable than a traditional data center. In this paper, we propose a fog computing structure and present a crowd-funding algorithm to integrate spare resources in the network. Furthermore, to encourage more resource owners to share their resources with the resource pool and to supervise the resource supporters as they actively perform their tasks, we propose an incentive mechanism in our algorithm. Simulation results show that our proposed incentive mechanism can effectively reduce the SLA violation rate and accelerate the completion of tasks.     

Benefits of silicon-enhanced root nodulation in a model legume are contingent upon rhizobial efficacy

Plant and Soil - Root residues are an important factor influencing soil phosphorus (P) availability for crop uptake, but how the residues from different species combinations in sole cropping or...     

Acidification and release of nutrients from organic matter — a model analysis

A simple, phenomenological model is proposed to describe the behaviour of nett mineralization of nitrogen from the soil organic matter.Experimental evidence shows that nett mineralization of nitrogen is increased following artificial acidification of soil forests. The model seems to describe appropriately this phenomenon and some testable predictions are derived from it. These predictions seem to give a clue to the intriguing difficulty of establishing effects of acid rain in coniferous forest ecosystems.A discussion is also given on how the model can be extended to nutrient elements other than nitrogen.     

Ant biodiversity and its relationship to ecosystem functioning: a review

Ants are important components of ecosystems not only because they constitute a great part of the animal biomass but also because they act as ecosystem engineers. Ant biodiversity is incredibly high and these organisms are highly responsive to human impact, which obviously reduces its richness. However, it is not clear how such disturbance damages the maintenance of ant services to the ecosystem. Ants are important in below ground processes through the alteration of the physical and chemical environment and through their effects on plants, microorganisms, and other soil organisms. This review summarizes the information available on ant biodiversity patterns, how it can be quantified, and how biodiversity is affected by human impacts such as land use change, pollution, invasions, and climate change. The role of ants in ecosystems is discussed, mainly from the perspective of the effects of ground-dwelling ants on soil processes and function, emphasizing their role as ecosystem engineers. Some lines of research are suggested after demonstrating the gaps in our current information on ant-soil interactions.     

Ecosystem engineering as an energy transfer process: a simple agent-based model

Ecosystem engineers are defined as organisms who modulate the availability of resources for themselves and other organisms by physically changing the environment. Ecosystem engineering is a well-recognised ecological interaction, but there is a limited number of general models due to the recent development of the field. Agent-based models are often used to study how organisms respond to changing environments and are suitable for modelling ecosystem engineering. To our knowledge, agent-based methodology has not yet been used to model ecosystem engineering. In this paper, we develop a simple agent-based population dynamics model of ecosystem engineering as an energy transfer process. We apply energy budget approach to conceptually explain how ecosystem engineers transfer energy to the environment and define various types of energy transfers relative to their effects on the engineers and other organisms. We simulate environments with various levels of resource abundance and compare the results of the model without ecosystem engineering agents to the model with ecosystem engineering agents. We find that in environments with higher levels of resources, the presence of ecosystem engineers increases the average carrying capacity and the strength of population fluctuations, while in environments with lower levels of resources, ecosystem engineering mitigates fluctuations, increases average carrying capacity and makes environments more resilient. Finally, we discuss about the further application of agent-based modelling for the theoretical and experimental development of the ecosystem engineering concept.     

Dynamics from a predator-prey-quarry-resource-scavenger model

Allochthonous resources can be found in many foodwebs and can influence both the structure and stability of an ecosystem. In order to better understand the role of how allochthonous resources are transferred as quarry from one predator-prey system to another, we propose a predator-prey-quarry-resource-scavenger (PPQRS) model, which is an extension of an existing model for quarry-resource-scavenger (a predator-prey-subsidy (PPS) model). Instead of taking the allochthonous resource input rate as a constant, as has been done in previous theoretical work, we explicitly incorporated the underlying predator-prey relation responsible for the input of quarry. The most profound differences between PPS and PPQRS system are found when the predator-prey system has limit cycles, resulting in a periodic rather than constant influx of quarry (the allochthonous resource) into the scavenger-resource interactions. This suggests that the way in which allochthonous resources are input into a predator-prey system can have a strong influence over the population dynamics. In order to understand the role of seasonality, we incorporated non-autonomous terms and showed that these terms can either stabilize or destabilize the dynamics, depending on the parameter regime. We also considered the influence of spatial motion (via diffusion) by constructing a continuum partial differential equation (PDE) model over space. We determine when such spatial dynamics essentially give the same information as the ordinary differential equation (ODE) system, versus other cases where there are strong spatial differences (such as spatial pattern formation) in the populations. In situations where increasing the carrying capacity in the ODE model drives the amplitude of the oscillations up, we found that a large carrying capacity in the PDE model results in a very small variation in average population size, showing that spatial diffusion is stabilizing for the PPQRS model.     

稀土尾矿土壤细菌群落结构对植被修复的响应

选用赣州-安远稀土弃废尾矿及其不同植被修复的堆浸田为研究对象,调查废弃尾矿及6种不同植被修复方案下土壤理化性质的变化,并利用变性凝胶梯度电泳(DGGE)技术,分析土壤微生物群落结构对植被修复的响应。结果表明:与未修复尾矿土壤相比,经不同植被修复后的土壤理化性质均得到明显改良,其中土壤含水量、有机质含量均比未修复尾矿土壤增加2—3倍。微生物群落结构分析表明,植被修复后土壤微生物群落与废弃尾矿土壤微生物群落亲缘度仅为0.21,表明植被修复后,土壤微生物群落结构发生了明显变化,且微生物多样性、均匀度、丰富度与未修复尾矿土壤相比均有了明显的提高。而在不同植被修复方案中,以湿地松和山胡椒为优势群落的两种植被修复方案对土壤改良效果最为明显,这两种修复方案不仅能显著改善土壤的固水性、有机质含量,并且对微生物群落的改善作用也最为显著。典范对应分析表明,废弃尾矿土壤微生物群落结构受土壤p H影响最为显著,而植被修复后土壤微生物群落的环境影响因子则转变为含水量、有机质、有机碳及总磷含量。进一步揭示了微生物在植被修复过程中所起到的重要作用,并为矿山生态重建过程中的土壤改良工作提供了丰富的理论依据。     

Larger Triticum aestivum plants do not preempt nutrient-rich patches in a glasshouse experiment

Plant competition belowground generally appears to be size-symmetric, i.e. larger plants only obtain a share of belowground resources proportional to their size, and therefore do not suppress smaller individuals. The experimental evidence for size-symmetric belowground competition comes primarily from experiments with homogenous soil conditions. It has been hypothesized that the presence of high nutrient patches that can be pre-empted by larger plants can make competition belowground size-asymmetric. We tested this hypothesis by growing Triticum aestivum individuals singly and in pairs in containers with aboveground dividers so that competition occurred only belowground. Plants grew in either a homogenous soil mixture, or in the same mixture with a band of enriched soil between them. Initial size differences were generated by a seven day difference in sowing date. There was no evidence of size-asymmetric competition with or without soil heterogeneity. Large plants did not have a disproportionate effect on smaller plants, nor did they perform disproportionately better when paired with a small neighbor. Our results suggest that in heterogeneous soil conditions, roots of larger plants that reach nutrient patches first are not able to prevent roots of smaller plants that arrive later from obtaining resources from the patch. This revised version was published online in August 2006 with corrections to the Cover Date.     

Wood forest resource consumption impact assessment based on a scarcity index accounting for wood functionality and substitutability (WoodSI)

The International Journal of Life Cycle Assessment - For society to continue to use forest resources in a sustainable manner, we need to be concerned about how they are consumed now and about the...