Branching out in new directions: the control of root architecture by lateral root formation

Plant roots are required for the acquisition of water and nutrients, for responses to abiotic and biotic signals in the soil, and to anchor the plant in the ground. Controlling plant root architecture is a fundamental part of plant development and evolution, enabling a plant to respond to changing environmental conditions and allowing plants to survive in different ecological niches. Variations in the size, shape and surface area of plant root systems are brought about largely by variations in root branching. Much is known about how root branching is controlled both by intracellular signalling pathays and by environmental signals. Here, we will review this knowledge, with particular emphasis on recent advances in the field that open new and exciting areas of research.     

The effect of iron source on formation and persistence of root iron pools in cereals

Abstract

Five chelated iron sources have been applied to barley and maize to investigate the effect of differing chemical form on the formation and persistence of root apoplastic Fe pools. Short-term Fe exposure (barley) experiments indicated that the charged state of the Fe complex was the most important factor regulating the initial formation and magnitude of the apoplastic pool. Longer term experiments (maize), incorporating a period of Fe deprivation, produced more complex results. Differences in plant growth during the experiment produced changes in the magnitude of the root Fe pool; these interacted with the chemical form of the applied Fe to regulate the release, utilisation and hence the ultimate size of the apoplastic pool produced by each Fe source. It is concluded that such experiments are poor indicators of the potential performance of novel chelated Fe sources.     

Fractal analysis of the root architecture of Gliricidia sepium for the spatial prediction of root branching,size and mass: model development and evaluation in agroforestry

Based on fractal and pipe model assumptions, a static three-dimensional model of the Gliricidia sepium root system was developed, in order to provide a basis for the prediction of root branching, size and mass in an alley cropping system. The model was built from observations about the topology, branching rules, link length and diameter, and root orientation, provided by in situ and extracted root systems. Evaluation tests were carried out at the plant level and at the field level. These tests principally concerned coefficients α and q –- the proportionality factor α between total cross-sectional area of a root before and after branching, and allocation parameter q that defines the partitioning of biomass between the new links after a branching event –- that could be considered as key variables of this fractal approach. Although independent of root diameter, these coefficients showed a certain variability that may affect the precision of the predictions. When calibrated, however, the model provided suitable predictions of root dry matter, total root length and root diameter at the plant level. At the field level, the simulation of 2D root maps was accurate for root distribution patterns, but the number of simulated root dots was underestimated in the surface layers. Hence recommendations were made to improve the model with regard to α and q. This static approach appeared to be well suited to study the root system of adult trees. Compared with explicit models, the main advantage of the fractal approach is its plasticity and ease of use. This revised version was published online in June 2006 with corrections to the Cover Date.     

Geometrical properties of simulated maize root systems: consequences for length density and intersection density

The spatial distribution of root length density (RLD) is important because it affects water and nutrient uptake. It is difficult to obtain reliable estimates of RLD because root systems are very variable and heterogeneous. We identified systematic trends, clustering, and anisotropy as geometrical properties of root systems, and studied their consequences for the sampling and observation of roots. We determined the degree of clustering by comparing the coefficient of variation of a simulated root system with that of a Boolean model. We also present an alternative theoretical derivation of the relation between RLD and root intersection density (RID) based on the theory of random processes of fibres. We show how systematic trends, clustering and anisotropy affect the theoretical relation between RLD and RID, and the consequences this has for measurement of RID in the field. We simulated the root systems of one hundred maize crops grown for a thermal time of 600 K d, and analysed the distribution of RLD and root intersection density RID on regular grids of locations throughout the simulated root systems. Systematic trends were most important in the surface layers, decreasing with depth. Clustering and anisotropy both increased with depth. Roots at depth had a bimodal distribution of root orientation, causing changes in the ratio of RLD/RID. The close proximity of the emerging lateral roots and the parent axis caused clustering which increased the coefficient of variation.     

Occurrence of acid and neutral carboxypeptidases in germinating cereals

High neutral metallocarboxypeptidase activity (EC 3.4.17) has earlier been detected in young seedlings of rice ( Oryza sativa L.) using benzyloxycarbonyl-L-phenylalanyl-L-alanine (Z-Phe-Ala) as substrate at pH 7. This finding was confirmed, and it was observed that the activity could be assayed with higher specificity and sensitivity by using Z-Gly-Ala or Z-Gly-Phe as substrate at pH 6.5–7. No corresponding activity was detected in seedlings of barley ( Hordeum vulgare L. cv. Himalaya), oats ( Avena sativa L.) or maize ( Zea mays L.). The seedlings of the four cereals possessed similar activities of acid carboxypeptidases (EC 3.4.16; hydrolysis of Z-Phe-Ala and Z-Ala-Phe at pH 5.2 and of Z-Ala-Arg at pH 5.7). However, in endosperms of germinating rice and maize these activities were only about 1–5% of those in barley and oats. A corresponding, although less pronounced, difference was evident between the scutella of the two pairs of cereals. The possible relationship between neutral carboxypeptidase activity and ability to grow in anaerobic conditions is discussed.     

Localized supply of phosphorus induces root morphological and architectural changes of rice in split and stratified soil cultures

A localized supply of phosphorus may affect root morphology and architecture, and thereby affect phosphorus uptake by rice plants. In the present study, we attempted to test this hypothesis using two rice cultivars representing upland and lowland ecotypes grown in specially designed split and stratified soil cultures with a low-phosphorus red soil. Our data indicate that a localized supply of phosphorus increased both total root length and root fineness, particularly in the high-phosphorus zone. In split culture, plants roots tended to preferentially grow on the high-phosphorus zone, with about 70–75% of the total root length allocated to the high-phosphorus compartment. The total root length on the high-phosphorus side in the split-phosphorus treatment was significantly longer than that in the homogenously high-phosphorus treatment, implying that a phosphorus-deficiency signal from the low-phosphorus side may stimulate the growth of the roots located in the high-phosphorus zone. In stratified soil culture, changes in root morphology and architecture were also observed as indicated by increased total root length, root fineness and relative root allocation in the high-phosphorus layers, again suggesting altered root morphology and preferential root proliferation in the high-phosphorus regions. The induced changes in root morphology and architecture by localized phosphorus supply may have both physiological significance and practical implications in that plants can meet the demand for phosphorus with parts of the roots reaching the high-phosphorus zone, hence localized fertilization methods such as side dressing or banded application of phosphorus fertilizers may both minimize phosphorus fixation by the soil and increase phosphorus uptake efficiency from the fertilizers.     

Estimation of tree root lengths using fractal branching rules: a comparison with soil coring for Grevillea robusta

Previous theoretical research has suggested that lengths of tree roots can be estimated on the basis of their branching characteristics, if branching has a fractal pattern that is independent of root diameter. This theory and its underlying assumptions was tested for Grevillea robusta trees at a site in Kenya by comparing estimates of root length from conventional soil coring and the output of a fractal branching algorithm. The trees were in a 4-year-old stand established on a 3 × 4 m planting grid. Root lengths (L _r) in four units of the planting grid were estimated by soil coring. Branching characteristics determined by examination of 32 excavated roots from 16 trees were: The number of branches at each branching point; the length of links between branching points (L _l); the diameter of root tips; and parameters which describe the change in diameter at each branching point. Each was found to be independent of root size. These data were used to parameterise a branching algorithm, which was then used to estimate numbers of root links in the four grid units (n _l) from root diameters at the bases of the four trees at the corners of each unit. Root lengths, from L _r = n₁ L₁, severely underestimated L _r. This discrepancy probably resulted from inaccuracy in the parameterisation of the branching algorithm, as output from the algorithm was very sensitive to small changes in parameter values. Use of fractal branching rules alone to estimate roots length does not appear possible unless the algorithm is calibrated to adjust for errors in parameter estimation. Calibration can be achieved by calculation of an 'effective link length', L ^eff ₁, from L _r/n _l, where L _r is measured by a reference method such as soil coring.     

脱落酸被土壤“掩盖”了的功能:调节根系构型形态建成

植物根系发育是一个重要的农艺性状。由于根系具有结构和生长模式简单、信号感受灵敏等,有可能成为研究植物发育可塑性的良好材料。通过分析脱落酸在主根、侧根和根毛的发生和生长中及根构型形成中的可能信号转导过程中的作用,提出未来研究应关注的科学问题。对ABA调控根系发育分子机制的探讨不仅有利于阐明如何调控根发育可塑性这一复杂和困难的生物学问题,而且对农业生产也极为重要。     

Hairy roots induced by Agrobacterium rhizogenes and production of regenerative plants in hairy root cultures in maize

Before the late 1980s, although the majority of Agrobacterium-mediated gene transfer experiments have been performed with A. tumefaciens[1―3], some work has also been done with its close relative, Agro-bacterium rhizogene. It has been considered that onl…     

Hairy roots induced by Agrobacterium rhizogenes and production of regenerative plants in hairy root cultures in maize

Hairy roots of maize were induced by infecting 15-d calli with Agrobacterium rhizogenes. The hairy roots cultured in hormone-free media showed the vigorous growth and typical hairy root features. The regenerated plants were produced from hairy roots in MS media supplemented with 1.6 mg/L ZT and 0.4 mg/L NAA. The PCR-Southern hybridization demonstrated that T-DNA had been integrated into the chromosome of regenerated plants.     

Electrical signalling and cytokinins mediate effects of light and root cutting on ion uptake in intact plants

Nutrient acquisition in the mature root zone is under systemic control by the shoot and the root tip. In maize, exposure of the shoot to light induces short-term (within 1–2 min) effects on net K⁺ and H⁺ transport at the root surface. H⁺ efflux decreased (from −18 to −12 nmol m⁻² s⁻¹) and K⁺ uptake (∼2 nmol m⁻² s⁻¹) reverted to efflux (∼−3 nmol m⁻² s⁻¹). Xylem probing revealed that the trans-root (electrical) potential drop between xylem vessels and an external electrode responded within seconds to a stepwise increase in light intensity; xylem pressure started to decrease after a ∼3 min delay, favouring electrical as opposed to hydraulic signalling. Cutting of maize and barley roots at the base reduced H⁺ efflux and stopped K⁺ influx in low-salt medium; xylem pressure rapidly increased to atmospheric levels. With 100 m m NaCl added to the bath, the pressure jump upon cutting was more dramatic, but fluxes remained unaffected, providing further evidence against hydraulic regulation of ion uptake. Following excision of the apical part of barley roots, influx changed to large efflux (−50 nmol m⁻² s⁻¹). Kinetin (2–4  µ m ), a synthetic cytokinin, reversed this effect. Regulation of ion transport by root-tip-synthesized cytokinins is discussed.     

Accumulation rate of ABA in detached maize roots correlates with root water potential regardless of age and branching order

How much ABA can be supplied by the roots is a key issue for modelling the ABA-mediated influence of drought on shoot physiology. We quantified accumulation rates of ABA ( S _ABA) in maize roots that were detached from well-watered plants and dehydrated to various extents by air-drying. S _ABA was estimated from changes in ABA content in root segments incubated at constant relative water content (RWC). Categories of root segments, differing in age and branching order, were compared (root branches, and nodal roots subdivided into root tips, subapical unbranched sections, and mature sections). All categories of roots accumulated ABA, including turgid and mature tissues containing no apex. S _ABA measured in turgid roots changed with root age and among root categories. This variability was largely accounted for by differences in water content among different categories of turgid roots. The response of S _ABA to changes in root water potential ( Ψ _root) induced by dehydration was common to root tips, nodal roots and branches of several ages, while this was not the case if root dehydration was expressed in terms of RWC. Differences among root categories in the response of S _ABA to RWC were due to different RWC values among categories at a given Ψ _root, and not to differences in the response of S _ABA to Ψ _root.     

Regeneration of Echinacea purpurea: Induction of root organogenesis from hypocotyl and cotyledon explants

An in vitro propagation system was developed for Echinacea purpureaL. (purple coneflower), a medicinal plant commonly used in the treatment of colds, flu and related ailments. Root organogenesis from Echinacea purpurea hypocotyl explants was effectively induced by indolebutyric acid. Indoleacetic acid was found to be less effective than indolebutyric acid while treatments with naphthaleneacetic acid were ineffective for induction of root organogenesis. The results of this study have established a micropropagation system for Echinacea purpurea that will provide axenic plant material for further investigations into medicinally active biochemicals and the mass production of high-quality Echinacea purpurea root tissues for the commercial market. This revised version was published online in June 2006 with corrections to the Cover Date.     

Phytotropin-induced root phototropism in maize

Phytotropins, even those not absorbing in the visible region of the spectrum, can induce a phototropic response in maize ( Zea mays L. cv. PX-75) roots when illuminated unilaterally with white light. The most active phytotropin, 2-(1-pyrenoyl) benzoic acid (PBA) can elicit a full response at 10 μ M , while the other active molecules, 2-carboxyphenyl-3-phenylpropane-1,3-dione (CPD), 2-carboxyphenyl-3-phenyl-1,2-pyrazole (CPP), 1-N-naphthylphthalamic acid (NPA) and erythrosin elicit a full response at 100 μ M . The less active phytotropins BBA and fluorescein give a reduced response. It is suggested that the observed effect cannot be explained solely on the basis of auxin transport inhibition. There is a photoreceptor in the extension zone of the root, which may be associated in some way with the receptor for NPA. The results are consistent with the proposal that the phototropic process may form part of the root gravitropic response mechanism.     

Regulation of shoot branching patterns by the basal root system: towards a predictive model

This study aimed to underpin the development of a generic predictivemodel of the regulation of shoot branching by roots in nodallyrooting perennial prostrate-stemmed species using knowledgegained from physiological studies of Trifolium repens. Experiment1 demonstrated that the net stimulatory influence from the basalrooted region of the plant on growth of newly emerging axillarybuds on the primary stem decreased as their phytomeric distancefrom the basal root system increased. Experiment 2 found thatat any one time the distribution of net root stimulus (NRS)to the apical bud on the primary stem and all lateral brancheswas fairly uniform within a single plant. Thus, although NRSavailability was uniform throughout the shoot system at anypoint in time, it progressively decreased as shoot apical budsgrew away from the basal root system. Based on these findings,a preliminary predictive model of the physiological regulationof branching pattern was developed. This model can explain thedecline in growth rate of buds on a primary stem as it growsaway from its basal root system but not the rapid progressivedecline in secondary branch development on successive lateralbranches. Thus knowledge of NRS availability to emerging budsis not, by itself, a sufficient basis from which to constructa predictive model. In addition, it seems that the ability ofan emerging bud to become activated in response to its localNRS availability is, at least in part, directly influenced bythe activation level of its parent apical bud. The experimentaltesting of this hypothesis, required for continued developmentof the model, is proceeding. Key words: Axillary bud outgrowth, branch development, bud activation, intra-plant variation, nodal roots, prostrate clonal herbs, root signals, Trifolium repens Received 11 September 2007; Revised 25 November 2007 Accepted 18 January 2008     

An integrated method for quantifying root architecture of field-grown maize

Background and Aims

A number of techniques have recently been developed for studying the root system architecture (RSA) of seedlings grown in various media. In contrast, methods for sampling and analysis of the RSA of field-grown plants, particularly for details of the lateral root components, are generally inadequate.

Methods

An integrated methodology was developed that includes a custom-made root-core sampling system for extracting intact root systems of individual maize plants, a combination of proprietary software and a novel program used for collecting individual RSA information, and software for visualizing the measured individual nodal root architecture.

Key Results

Example experiments show that large root cores can be sampled, and topological and geometrical structure of field-grown maize root systems can be quantified and reconstructed using this method. Second- and higher order laterals are found to contribute substantially to total root number and length. The length of laterals of distinct orders varies significantly. Abundant higher order laterals can arise from a single first-order lateral, and they concentrate in the proximal axile branching zone.

Conclusions

The new method allows more meaningful sampling than conventional methods because of its easily opened, wide corer and sampling machinery, and effective analysis of RSA using the software. This provides a novel technique for quantifying RSA of field-grown maize and also provides a unique evaluation of the contribution of lateral roots. The method also offers valuable potential for parameterization of root architectural models.     

Patterns of variability in the diameter of lateral roots in the banana root system

The relative importance of root system structure, plant carbon status and soil environment in the determination of lateral root diameter remains unclear, and was investigated in this study. Banana (Musa acuminata) plants were grown at various moderate levels of soil compaction in two distinct experiments, in a field experiment (FE) and in a glasshouse experiment (GE). Radiant flux density was 5 times lower in GE. The distribution of root diameter was measured for several root branching orders. Root diameters ranged between 0.09 and 0.52 mm for secondary roots and between 0.06 and 0.27 mm for tertiary roots. A relationship was found between the diameter of the parent bearing root and the median diameter of its laterals, which appears to be valid for a wide range of species. Mean lateral root diameter increased with distance to the base of the root and decreased with branching density [number of lateral roots per unit length of bearing root (cm(-1))]. Typical symptoms of low light availability were observed in GE. In this case, lateral root diameter variability was reduced. Although primary root growth was affected by soil compaction, no effects on lateral root diameter were observed.     

Evaluation of parameters describing the root system architecture of field grown maize plants (Zea mays L.)

The objective of this work was to study elongation curves of maize axile roots throughout their elongation period under field conditions. Relationships between their elongation rate and the extension rate of their branched region were also studied. Maize, early-maturing cultivar Dea, was grown on a deep, barrier-free clay loam (depth 1.80m). Trenches were dug during four periods until after silking and axile roots were excavated. Parameters measured were total length and the lengths of basal and apical unbranched zones. The rank of the bearing phytomer and general data about the carrying plant were also recorded. Results showed that axile roots from lower phytomers had similar elongation rates irrespective of the rank of the carrying phytomer. This elongation rate declined with root age. A monomolecular elongation model was fitted to the experimental data. Elongation was much slower in roots from upper phytomers. A rough linear relationship was found between the elongation rate of axile roots and the length of the apical unbranched zone. This result suggests that laterals appeared on a root segment a constant time after it was formed. Possible mechanisms with may account for the declining elongation rate with root age (increasing distance from aerial parts or adverse environmental conditions in deep soil layers) and variability between individual roots are also discussed.     

Role of cytokinin and auxin in shaping root architecture: regulating vascular differentiation, lateral root initiation, root apical dominance and root gravitropism

BACKGROUND AND AIMS: Development and architecture of plant roots are regulated by phytohormones. Cytokinin (CK), synthesized in the root cap, promotes cytokinesis, vascular cambium sensitivity, vascular differentiation and root apical dominance. Auxin (indole-3-acetic acid, IAA), produced in young shoot organs, promotes root development and induces vascular differentiation. Both IAA and CK regulate root gravitropism. The aims of this study were to analyse the hormonal mechanisms that induce the root's primary vascular system, explain how differentiating-protoxylem vessels promote lateral root initiation, propose the concept of CK-dependent root apical dominance, and visualize the CK and IAA regulation of root gravitropiosm. KEY ISSUES: The hormonal analysis and proposed mechanisms yield new insights and extend previous concepts: how the radial pattern of the root protoxylem vs. protophloem strands is induced by alternating polar streams of high IAA vs. low IAA concentrations, respectively; how differentiating-protoxylem vessel elements stimulate lateral root initiation by auxin-ethylene-auxin signalling; and how root apical dominance is regulated by the root-cap-synthesized CK, which gives priority to the primary root in competition with its own lateral roots. CONCLUSIONS: CK and IAA are key hormones that regulate root development, its vascular differentiation and root gravitropism; these two hormones, together with ethylene, regulate lateral root initiation.     

Evaluation of the use of a model rhizodeposition technique to separate root and microbial respiration in soil

A model rhizodeposition technique to estimate the root and microbial components of ¹⁴C soil/root respiration in pulse-labelling experiments is described. The method involves the injection of model rhizodeposits, consisting of ¹⁴C-labelled glucose, root extract or root cell wall material, into the rooted soil of an unlabelled plant, simultaneously with the pulse-labelling of a separate but similar plant with ¹⁴CO₂. In a growth chamber experiment with 30 day old wheat and barley the contribution of direct root respiration to ¹⁴C soil/root respiration over a 26 day period after labelling was estimated 89–95%. Estimates of direct root respiration in field-grown wheat and barley at different development stages in most cases accounted for at least 75% of ¹⁴C soil/root respiration over a 21 day period after labelling. The mineralization rate of injected ¹⁴C-glucose was positively correlated with the concentration of glucose-C established in soil. The use of the method in rhizosphere carbon budget estimations is evaluated. Communication No. 73 of the Dutch Programme on Soil Ecology of Arable Farming Systems. Communication No. 73 of the Dutch Programme on Soil Ecology of Arable Farming Systems.